MS022479 (gene) Bitter gourd (TR) v1

Overview


Name	MS022479
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10
Location	scaffold47: 3700949 .. 3701488 (-)
RNA-Seq Expression	MS022479
Synteny	MS022479

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATTGAAGGCAGAGAAGGAGAAGGAGGAAAAGATTTTTCTGAAGGATCTTCGTCGGCGCAACCAGTTGGATCAACCCCAAGTCGATATGAATCACAGAAACGTAGAGATTGGAACACATTTTGTCAATATTTGAAGAATCAAAGGCCCTCAGTCCCACTTTCTAACTGCAGCTGCAATCATGTTCTGGAATTCCTCCGCTATCTTGATCAGTTCGGAAAAACAAAAGTTCATCATCATGGTTGCATGTTTTATGGACATCCCGAGCCACCAGCGCCATGTACTTGTCCACTTAGGCAAGCTTGGGGGAGTTTGGATGCTCTTATCGGGAGATTGAGAGCTGCCTATGAGGAAAATGGTGGATCGCCAGAAACAAATCCTTTTGCTAGTGGTGCGATTAGGGTTTATCTCAGGGATGTGAGGGAGTGTCAAGCCAAAGCAAGAGGAATTCCTTACAAAAAGAACAAGAAGAAGAAGCCAGTTCAAAACAAGGAAACCGAAGAATCAAGCTCTATGACGATGTTGCACTTTGCCCCT

mRNA sequence

ATGTCTATTGAAGGCAGAGAAGGAGAAGGAGGAAAAGATTTTTCTGAAGGATCTTCGTCGGCGCAACCAGTTGGATCAACCCCAAGTCGATATGAATCACAGAAACGTAGAGATTGGAACACATTTTGTCAATATTTGAAGAATCAAAGGCCCTCAGTCCCACTTTCTAACTGCAGCTGCAATCATGTTCTGGAATTCCTCCGCTATCTTGATCAGTTCGGAAAAACAAAAGTTCATCATCATGGTTGCATGTTTTATGGACATCCCGAGCCACCAGCGCCATGTACTTGTCCACTTAGGCAAGCTTGGGGGAGTTTGGATGCTCTTATCGGGAGATTGAGAGCTGCCTATGAGGAAAATGGTGGATCGCCAGAAACAAATCCTTTTGCTAGTGGTGCGATTAGGGTTTATCTCAGGGATGTGAGGGAGTGTCAAGCCAAAGCAAGAGGAATTCCTTACAAAAAGAACAAGAAGAAGAAGCCAGTTCAAAACAAGGAAACCGAAGAATCAAGCTCTATGACGATGTTGCACTTTGCCCCT

Coding sequence (CDS)

ATGTCTATTGAAGGCAGAGAAGGAGAAGGAGGAAAAGATTTTTCTGAAGGATCTTCGTCGGCGCAACCAGTTGGATCAACCCCAAGTCGATATGAATCACAGAAACGTAGAGATTGGAACACATTTTGTCAATATTTGAAGAATCAAAGGCCCTCAGTCCCACTTTCTAACTGCAGCTGCAATCATGTTCTGGAATTCCTCCGCTATCTTGATCAGTTCGGAAAAACAAAAGTTCATCATCATGGTTGCATGTTTTATGGACATCCCGAGCCACCAGCGCCATGTACTTGTCCACTTAGGCAAGCTTGGGGGAGTTTGGATGCTCTTATCGGGAGATTGAGAGCTGCCTATGAGGAAAATGGTGGATCGCCAGAAACAAATCCTTTTGCTAGTGGTGCGATTAGGGTTTATCTCAGGGATGTGAGGGAGTGTCAAGCCAAAGCAAGAGGAATTCCTTACAAAAAGAACAAGAAGAAGAAGCCAGTTCAAAACAAGGAAACCGAAGAATCAAGCTCTATGACGATGTTGCACTTTGCCCCT

Protein sequence

MSIEGREGEGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNKETEESSSMTMLHFAP

Homology

[Close]

BLAST of MS022479 vs. NCBI nr
Match: XP_022147983.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Momordica charantia])

HSP 1 Score: 371.3 bits (952), Expect = 4.7e-99
Identity = 178/180 (98.89%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MSIEGREGEGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSC 60
           MSIEGREG GGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSC
Sbjct: 1   MSIEGREG-GGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSC 60

Query: 61  NHVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEN 120
           NHVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEN
Sbjct: 61  NHVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEN 120

Query: 121 GGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNKETEESSSMTMLHFAP 180
           GGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQN ETEESSSMTMLHFAP
Sbjct: 121 GGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNNETEESSSMTMLHFAP 179

[Close]

BLAST of MS022479 vs. NCBI nr
Match: KAG6589232.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 302.8 bits (774), Expect = 2.0e-78
Identity = 149/183 (81.42%), Postives = 154/183 (84.15%), Query Frame = 0


Query: 1   MSIEGREGEGGKDFSEGSSSA---QPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSN 60
           MS EG      KDFSEGSSS    QPVGS PSRYESQKRRDWNTFCQYLKNQRP VPLS+
Sbjct: 1   MSFEG----ATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CSCNHVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           CSCNHVLEFLRYLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EENGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNKETEESSSMTMLH 180
           EE+GGSPETNPFASGAIRVYLRDVRECQAKARGIPYKK KKK    N+      S +M+H
Sbjct: 121 EESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMH 179

[Close]

BLAST of MS022479 vs. NCBI nr
Match: XP_023530720.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 302.4 bits (773), Expect = 2.7e-78
Identity = 149/183 (81.42%), Postives = 154/183 (84.15%), Query Frame = 0


Query: 1   MSIEGREGEGGKDFSEGSSSA---QPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSN 60
           MS EG    G KDFSEGSSS    QP GS PSRYESQKRRDWNTFCQYLKNQRP VPLS+
Sbjct: 1   MSFEG----GTKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CSCNHVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           CSCNHVLEFLRYLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EENGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNKETEESSSMTMLH 180
           EE+GGSPETNPFASGAIRVYLRDVRECQAKARGIPYKK KKK    N+      S +M+H
Sbjct: 121 EESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMH 179

[Close]

BLAST of MS022479 vs. NCBI nr
Match: XP_022930813.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata])

HSP 1 Score: 300.1 bits (767), Expect = 1.3e-77
Identity = 148/183 (80.87%), Postives = 153/183 (83.61%), Query Frame = 0


Query: 1   MSIEGREGEGGKDFSEGSSSA---QPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSN 60
           MS EG      KDFSEGSSS    QP GS PSRYESQKRRDWNTFCQYLKNQRP VPLS+
Sbjct: 1   MSFEG----ATKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CSCNHVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           CSCNHVLEFLRYLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EENGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNKETEESSSMTMLH 180
           EE+GGSPETNPFASGAIRVYLRDVRECQAKARGIPYKK KKK    N+      S +M+H
Sbjct: 121 EESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMH 179

[Close]

BLAST of MS022479 vs. NCBI nr
Match: KAG7022931.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298.1 bits (762), Expect = 5.0e-77
Identity = 149/183 (81.42%), Postives = 154/183 (84.15%), Query Frame = 0


Query: 1   MSIEGREGEGGKDFSEGSSSA---QPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSN 60
           MS EG      KDFSEGSSS    QPVGS PSRYESQKRRDWNTFCQYLKNQRP VPLS+
Sbjct: 1   MSFEG----ATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CSCNHVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           CSCNHVLEFLRYLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EENGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNKETEESSSMTMLH 180
           EE+GGSPETNPFASGAIRVYLRDVRECQAKARGIPYKK KKK    N+      S +M+H
Sbjct: 121 EESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKK-KKKTTTTNQSKGAEDSTSMMH 178

[Close]

BLAST of MS022479 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 7.8e-73
Identity = 136/168 (80.95%), Postives = 141/168 (83.93%), Query Frame = 0


Query: 9   EGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVLEFLR 68
           E GK   E S S  PV  TPSRYESQKRRDWNTF QYLKNQRP VP+S+CSCNHVL+FLR
Sbjct: 6   ERGKSLMESSGSEPPV--TPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLR 65

Query: 69  YLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNP 128
           YLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG PETNP
Sbjct: 66  YLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNP 125

Query: 129 FASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQ----NKETEESSS 173
           FASGAIRVYLR+VRECQAKARGIPYKK KKKKP       +E   SSS
Sbjct: 126 FASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSSSS 171

[Close]

BLAST of MS022479 vs. ExPASy Swiss-Prot
Match: Q7XDD0 (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.5e-60
Identity = 108/154 (70.13%), Postives = 126/154 (81.82%), Query Frame = 0


Query: 8   GEGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVLEFL 67
           G GG   + G++SA   G++PSRYESQKRRDWNTF QYL+N RP + L+ CS  HVLEFL
Sbjct: 18  GGGGGGMATGATSASAAGASPSRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFL 77

Query: 68  RYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETN 127
           RYLDQFGKTKVH   C F+GHP PPAPC CPLRQAWGSLDAL+GRLRAAYEENGG PE N
Sbjct: 78  RYLDQFGKTKVHAPACPFFGHPAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENN 137

Query: 128 PFASGAIRVYLRDVRECQAKARGIPYKKNKKKKP 162
           PF + A+R+YLR+VRE QA+ARG+ Y+K K+KKP
Sbjct: 138 PFGARAVRLYLREVREHQARARGVSYEKKKRKKP 171

[Close]

BLAST of MS022479 vs. ExPASy Swiss-Prot
Match: A2XVI8 (Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 8.4e-59
Identity = 109/163 (66.87%), Postives = 129/163 (79.14%), Query Frame = 0


Query: 5   GREGEGGKDFSEGSSSAQPVGS--TPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNH 64
           G  G GG   S  SS +   G+  +PSRYE+QKRRDWNTF QYL+N RP + L+ CS  H
Sbjct: 14  GGNGGGGGSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAH 73

Query: 65  VLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG 124
           VLEFLRYLDQFGKTKVH   C F+GHP PPAPC CPLRQAWGSLDAL+GRLRAA+EENGG
Sbjct: 74  VLEFLRYLDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGG 133

Query: 125 SPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNK 166
            PE+NPFA+ A+R+YLR+VRE QA+ARG+ Y+K K+KKP Q +
Sbjct: 134 RPESNPFAARAVRLYLREVREHQARARGVSYEKKKRKKPQQQQ 176

[Close]

BLAST of MS022479 vs. ExPASy Swiss-Prot
Match: Q7XRS1 (Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2)

HSP 1 Score: 228.0 bits (580), Expect = 8.4e-59
Identity = 109/163 (66.87%), Postives = 129/163 (79.14%), Query Frame = 0


Query: 5   GREGEGGKDFSEGSSSAQPVGS--TPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNH 64
           G  G GG   S  SS +   G+  +PSRYE+QKRRDWNTF QYL+N RP + L+ CS  H
Sbjct: 14  GGNGGGGGSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAH 73

Query: 65  VLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG 124
           VLEFLRYLDQFGKTKVH   C F+GHP PPAPC CPLRQAWGSLDAL+GRLRAA+EENGG
Sbjct: 74  VLEFLRYLDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGG 133

Query: 125 SPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNK 166
            PE+NPFA+ A+R+YLR+VRE QA+ARG+ Y+K K+KKP Q +
Sbjct: 134 RPESNPFAARAVRLYLREVREHQARARGVSYEKKKRKKPQQQQ 176

[Close]

BLAST of MS022479 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 8.4e-59
Identity = 107/166 (64.46%), Postives = 131/166 (78.92%), Query Frame = 0


Query: 8   GEGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVLEFL 67
           G  G + ++  SS+    +  SRYE+QKRRDWNTF QYL+N RP + LS CS  HVLEFL
Sbjct: 32  GATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFL 91

Query: 68  RYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETN 127
           RYLDQFGKTKVH + C FYGHP PPAPC CPLRQAWGSLDALIGRLRAA+EENGG PETN
Sbjct: 92  RYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETN 151

Query: 128 PFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNKETEESSSM 174
           PF + A+R+YLR+VR+ Q+KARG+ Y+K K+K+P+ +  T  SS++
Sbjct: 152 PFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSSSAV 197

[Close]

BLAST of MS022479 vs. ExPASy TrEMBL
Match: A0A6J1D2T4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Momordica charantia OX=3673 GN=LOC111016777 PE=3 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 2.3e-99
Identity = 178/180 (98.89%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 1   MSIEGREGEGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSC 60
           MSIEGREG GGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSC
Sbjct: 1   MSIEGREG-GGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSC 60

Query: 61  NHVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEN 120
           NHVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEN
Sbjct: 61  NHVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEEN 120

Query: 121 GGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNKETEESSSMTMLHFAP 180
           GGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQN ETEESSSMTMLHFAP
Sbjct: 121 GGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNNETEESSSMTMLHFAP 179

[Close]

BLAST of MS022479 vs. ExPASy TrEMBL
Match: A0A6J1EWG4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111437182 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.4e-78
Identity = 148/183 (80.87%), Postives = 153/183 (83.61%), Query Frame = 0


Query: 1   MSIEGREGEGGKDFSEGSSSA---QPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSN 60
           MS EG      KDFSEGSSS    QP GS PSRYESQKRRDWNTFCQYLKNQRP VPLS+
Sbjct: 1   MSFEG----ATKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CSCNHVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           CSCNHVLEFLRYLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EENGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNKETEESSSMTMLH 180
           EE+GGSPETNPFASGAIRVYLRDVRECQAKARGIPYKK KKK    N+      S +M+H
Sbjct: 121 EESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMH 179

[Close]

BLAST of MS022479 vs. ExPASy TrEMBL
Match: A0A6J1JNV9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111486170 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 7.1e-77
Identity = 148/183 (80.87%), Postives = 153/183 (83.61%), Query Frame = 0


Query: 1   MSIEGREGEGGKDFSEGSSSA---QPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSN 60
           MS EG    G KDFSEGSSS    QP G  PSRYESQKRRDWNTFCQYLKNQRP VPLS+
Sbjct: 1   MSFEG----GSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CSCNHVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           CSCNHVLEFLRYLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EENGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNKETEESSSMTMLH 180
           EE+GGSPETNPFASGAIRVYLRDVRECQAKARGIPYKK KKK    N+      S +M+H
Sbjct: 121 EESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKK-KKKTTTTNQSKGAEDSTSMMH 178

[Close]

BLAST of MS022479 vs. ExPASy TrEMBL
Match: A0A1S3C1B9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo OX=3656 GN=LOC103495500 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.0e-75
Identity = 145/185 (78.38%), Postives = 154/185 (83.24%), Query Frame = 0


Query: 7   EGEGGKDFSEGSSSAQPVGS-----TPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCN 66
           EG   KDFSEGSSS+   GS     TPSRYESQKRRDWNTFCQYLKNQRP VPLS+C+CN
Sbjct: 4   EGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCN 63

Query: 67  HVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENG 126
            VLEFLRYLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENG
Sbjct: 64  QVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENG 123

Query: 127 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNK------ETEESSSMTM 181
           GS ETNPFASGAIRVYLRDVRECQAKARGIPYKK KKK    N+      + ++SSS +M
Sbjct: 124 GSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSTINQTKGGGHDDQDSSSTSM 183

[Close]

BLAST of MS022479 vs. ExPASy TrEMBL
Match: A0A0A0K2D1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048120 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 5.1e-75
Identity = 147/191 (76.96%), Postives = 156/191 (81.68%), Query Frame = 0


Query: 1   MSIEGREGEGGKDFSEGSSSAQPVGS-----TPSRYESQKRRDWNTFCQYLKNQRPSVPL 60
           MSIEG      KDFSEGSSS+   GS     TPSRYESQKRRDWNTFCQYLKNQRP VPL
Sbjct: 1   MSIEG--SSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPL 60

Query: 61  SNCSCNHVLEFLRYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRA 120
           S+C+CN VLEFLRYLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRA
Sbjct: 61  SHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRA 120

Query: 121 AYEENGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQ------NKETEE 180
           AYEENGGS ETNPFASGAIRVYLRDVRECQAKARGIPYKK KKK  +         + ++
Sbjct: 121 AYEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQD 180

[Close]

BLAST of MS022479 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 274.6 bits (701), Expect = 5.5e-74
Identity = 136/168 (80.95%), Postives = 141/168 (83.93%), Query Frame = 0


Query: 9   EGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVLEFLR 68
           E GK   E S S  PV  TPSRYESQKRRDWNTF QYLKNQRP VP+S+CSCNHVL+FLR
Sbjct: 6   ERGKSLMESSGSEPPV--TPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLR 65

Query: 69  YLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNP 128
           YLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG PETNP
Sbjct: 66  YLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNP 125

Query: 129 FASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQ----NKETEESSS 173
           FASGAIRVYLR+VRECQAKARGIPYKK KKKKP       +E   SSS
Sbjct: 126 FASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSSSS 171

[Close]

BLAST of MS022479 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 274.6 bits (701), Expect = 5.5e-74
Identity = 136/168 (80.95%), Postives = 141/168 (83.93%), Query Frame = 0


Query: 9   EGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVLEFLR 68
           E GK   E S S  PV  TPSRYESQKRRDWNTF QYLKNQRP VP+S+CSCNHVL+FLR
Sbjct: 6   ERGKSLMESSGSEPPV--TPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLR 65

Query: 69  YLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNP 128
           YLDQFGKTKVH  GCMFYG PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGG PETNP
Sbjct: 66  YLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNP 125

Query: 129 FASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQ----NKETEESSS 173
           FASGAIRVYLR+VRECQAKARGIPYKK KKKKP       +E   SSS
Sbjct: 126 FASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSSSS 171

[Close]

BLAST of MS022479 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 228.0 bits (580), Expect = 5.9e-60
Identity = 107/166 (64.46%), Postives = 131/166 (78.92%), Query Frame = 0


Query: 8   GEGGKDFSEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVLEFL 67
           G  G + ++  SS+    +  SRYE+QKRRDWNTF QYL+N RP + LS CS  HVLEFL
Sbjct: 32  GATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFL 91

Query: 68  RYLDQFGKTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETN 127
           RYLDQFGKTKVH + C FYGHP PPAPC CPLRQAWGSLDALIGRLRAA+EENGG PETN
Sbjct: 92  RYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETN 151

Query: 128 PFASGAIRVYLRDVRECQAKARGIPYKKNKKKKPVQNKETEESSSM 174
           PF + A+R+YLR+VR+ Q+KARG+ Y+K K+K+P+ +  T  SS++
Sbjct: 152 PFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSSSAV 197

[Close]

BLAST of MS022479 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 226.5 bits (576), Expect = 1.7e-59
Identity = 107/147 (72.79%), Postives = 121/147 (82.31%), Query Frame = 0


Query: 15  SEGSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVLEFLRYLDQFG 74
           S  SSS     +  SRYE+QKRRDWNTF QYL+N RP + LS CS  HVLEFLRYLDQFG
Sbjct: 33  SSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFG 92

Query: 75  KTKVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAI 134
           KTKVH H C F+GHP PPAPC CPLRQAWGSLDALIGRLRAA+EENGGSPETNPF + A+
Sbjct: 93  KTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAV 152

Query: 135 RVYLRDVRECQAKARGIPYKKNKKKKP 162
           R+YLR+VR+ QAKARGI Y+K K+K+P
Sbjct: 153 RLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of MS022479 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 226.1 bits (575), Expect = 2.3e-59
Identity = 102/145 (70.34%), Postives = 122/145 (84.14%), Query Frame = 0


Query: 17  GSSSAQPVGSTPSRYESQKRRDWNTFCQYLKNQRPSVPLSNCSCNHVLEFLRYLDQFGKT 76
           G S      +TPSRYESQKRRDWNTF QYLKN +P + LS CS  HV+EFL+YLDQFGKT
Sbjct: 18  GPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKT 77

Query: 77  KVHHHGCMFYGHPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRV 136
           KVH   C ++GH +PP+PC+CPL+QAWGSLDALIGRLRAAYEENGG P++NPFA+ A+R+
Sbjct: 78  KVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRI 137

Query: 137 YLRDVRECQAKARGIPYKKNKKKKP 162
           YLR+VRE QAKARGIPY+K K+K+P
Sbjct: 138 YLREVRESQAKARGIPYEKKKRKRP 162

The following BLAST results are available for this feature:

BLAST of MS022479 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147983.1	4.7e-99	98.89	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Momordica charantia]	[more]
KAG6589232.1	2.0e-78	81.42	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
XP_023530720.1	2.7e-78	81.42	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930813.1	1.3e-77	80.87	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata]	[more]
KAG7022931.1	5.0e-77	81.42	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]

BLAST of MS022479 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	7.8e-73	80.95	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q7XDD0	1.5e-60	70.13	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]
A2XVI8	8.4e-59	66.87	Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1	[more]
Q7XRS1	8.4e-59	66.87	Protein G1-like4 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L4 PE=1 SV=2	[more]
O82268	8.4e-59	64.46	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of MS022479 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D2T4	2.3e-99	98.89	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1EWG4	6.4e-78	80.87	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1JNV9	7.1e-77	80.87	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A1S3C1B9	3.0e-75	78.38	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo OX=3656 GN=LOC103495...	[more]
A0A0A0K2D1	5.1e-75	76.96	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048120 PE=3 S...	[more]

BLAST of MS022479 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	5.5e-74	80.95	Protein of unknown function (DUF640)	[more]
AT2G42610.2	5.5e-74	80.95	Protein of unknown function (DUF640)	[more]
AT2G31160.1	5.9e-60	64.46	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.7e-59	72.79	Protein of unknown function (DUF640)	[more]
AT1G07090.1	2.3e-59	70.34	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 20..143 e-value: 1.7E-64 score: 215.7
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 30..157 score: 77.098846
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..180
None	No IPR available	PANTHER	PTHR31165:SF10	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	coord: 11..174
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 11..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022479.1	MS022479.1	mRNA