MS022443 (gene) Bitter gourd (TR) v1

Overview


Name	MS022443
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Epidermal patterning factor-like protein
Location	scaffold47: 3389581 .. 3389748 (-)
RNA-Seq Expression	MS022443
Synteny	MS022443

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGGTTGCAGTGGCGGGGTCGAGATTGCCGGATTGCTCCCACGCGTGCGGCTCGTGCTCGCCGTGCAGGCTTGTGATGATCAGTTTCGTTTGTGCGGCGGTGCAAGAGGCGGAGACATGTCCCATGGCTTACAGATGCATGTGTAATAACAAGTCATATCCTGTTCCT

mRNA sequence

ACGGTTGCAGTGGCGGGGTCGAGATTGCCGGATTGCTCCCACGCGTGCGGCTCGTGCTCGCCGTGCAGGCTTGTGATGATCAGTTTCGTTTGTGCGGCGGTGCAAGAGGCGGAGACATGTCCCATGGCTTACAGATGCATGTGTAATAACAAGTCATATCCTGTTCCT

Coding sequence (CDS)

ACGGTTGCAGTGGCGGGGTCGAGATTGCCGGATTGCTCCCACGCGTGCGGCTCGTGCTCGCCGTGCAGGCTTGTGATGATCAGTTTCGTTTGTGCGGCGGTGCAAGAGGCGGAGACATGTCCCATGGCTTACAGATGCATGTGTAATAACAAGTCATATCCTGTTCCT

Protein sequence

TVAVAGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP

Homology

[Close]

BLAST of MS022443 vs. NCBI nr
Match: XP_022148033.1 (protein EPIDERMAL PATTERNING FACTOR 1-like [Momordica charantia])

HSP 1 Score: 122.9 bits (307), Expect = 9.0e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  TVAVAGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP 57
          TVAVAGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP
Sbjct: 42 TVAVAGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP 97

[Close]

BLAST of MS022443 vs. NCBI nr
Match: KAG7579926.1 (hypothetical protein ISN45_Aa03g040260 [Arabidopsis thaliana x Arabidopsis arenosa] >KAG7584589.1 hypothetical protein ISN44_As08g040300 [Arabidopsis suecica] >CAE5992871.1 unnamed protein product [Arabidopsis arenosa])

HSP 1 Score: 117.1 bits (292), Expect = 4.9e-23
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   TVAVAGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP 57
           TV VAGSRLPDCSHACGSCSPCRLVM+SFVCA++QEAETCPMAY+CMCNNKSYPVP
Sbjct: 49  TVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASLQEAETCPMAYKCMCNNKSYPVP 104

[Close]

BLAST of MS022443 vs. NCBI nr
Match: NP_179684.1 (epidermal patterning factor 1 [Arabidopsis thaliana] >Q8S8I4.1 RecName: Full=Protein EPIDERMAL PATTERNING FACTOR 1; Contains: RecName: Full=MEPF1; Flags: Precursor [Arabidopsis thaliana] >KAG7636879.1 hypothetical protein ISN45_At02g014610 [Arabidopsis thaliana x Arabidopsis arenosa] >KAG7641496.1 hypothetical protein ISN44_As02g015110 [Arabidopsis suecica] >AAM15214.1 predicted protein [Arabidopsis thaliana] >AEC07090.1 epidermal patterning factor 1 [Arabidopsis thaliana] >OAP11009.1 EPF1 [Arabidopsis thaliana])

HSP 1 Score: 117.1 bits (292), Expect = 4.9e-23
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   TVAVAGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP 57
           TV VAGSRLPDCSHACGSCSPCRLVM+SFVCA+V+EAETCPMAY+CMCNNKSYPVP
Sbjct: 49  TVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPVP 104

[Close]

BLAST of MS022443 vs. NCBI nr
Match: XP_002886313.1 (protein EPIDERMAL PATTERNING FACTOR 1 [Arabidopsis lyrata subsp. lyrata] >EFH62572.1 hypothetical protein ARALYDRAFT_900467 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 117.1 bits (292), Expect = 4.9e-23
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   TVAVAGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP 57
           TV VAGSRLPDCSHACGSCSPCRLVM+SFVCA++QEAETCPMAY+CMCNNKSYPVP
Sbjct: 50  TVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASLQEAETCPMAYKCMCNNKSYPVP 105

[Close]

BLAST of MS022443 vs. NCBI nr
Match: CAA7014027.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 116.7 bits (291), Expect = 6.4e-23
Identity = 50/56 (89.29%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   TVAVAGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP 57
           TV VAGSRLPDCSHACGSCSPCRLVM+SFVCA+++EAETCPMAY+CMCNNKSYPVP
Sbjct: 54  TVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASIEEAETCPMAYKCMCNNKSYPVP 109

[Close]

BLAST of MS022443 vs. ExPASy Swiss-Prot
Match: Q8S8I4 (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.5e-26
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   TVAVAGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP 57
           TV VAGSRLPDCSHACGSCSPCRLVM+SFVCA+V+EAETCPMAY+CMCNNKSYPVP
Sbjct: 49  TVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPVP 104

[Close]

BLAST of MS022443 vs. ExPASy Swiss-Prot
Match: C4B8C5 (EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=EPFL7 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.5e-11
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 5   AGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP 57
           +GS +PDCS+ACG C PC+LV+IS  C+A   +E CP+ Y+C+C  K Y VP
Sbjct: 121 SGSSIPDCSNACGPCKPCKLVVISSTCSA---SEACPLVYKCLCKGKYYHVP 169

[Close]

BLAST of MS022443 vs. ExPASy Swiss-Prot
Match: Q8LC53 (Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.9e-11
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 6   GSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP 57
           GS LPDCS+ACG+CSPC+ VMISF C+    AE+C + YRC C  + Y VP
Sbjct: 70  GSSLPDCSYACGACSPCKRVMISFECSV---AESCSVIYRCTCRGRYYHVP 117

[Close]

BLAST of MS022443 vs. ExPASy TrEMBL
Match: A0A6J1D2Y3 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111016820 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.4e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  TVAVAGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP 57
          TVAVAGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP
Sbjct: 42 TVAVAGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP 97

[Close]

BLAST of MS022443 vs. ExPASy TrEMBL
Match: A0A178VX97 (Epidermal patterning factor-like protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g16320 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.4e-23
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   TVAVAGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP 57
           TV VAGSRLPDCSHACGSCSPCRLVM+SFVCA+V+EAETCPMAY+CMCNNKSYPVP
Sbjct: 49  TVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPVP 104

[Close]

BLAST of MS022443 vs. ExPASy TrEMBL
Match: D7L4L8 (Epidermal patterning factor-like protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_900467 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.4e-23
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   TVAVAGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP 57
           TV VAGSRLPDCSHACGSCSPCRLVM+SFVCA++QEAETCPMAY+CMCNNKSYPVP
Sbjct: 50  TVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASLQEAETCPMAYKCMCNNKSYPVP 105

[Close]

BLAST of MS022443 vs. ExPASy TrEMBL
Match: A0A6D2HH05 (Epidermal patterning factor-like protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS1261 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 50/56 (89.29%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   TVAVAGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP 57
           TV VAGSRLPDCSHACGSCSPCRLVM+SFVCA+++EAETCPMAY+CMCNNKSYPVP
Sbjct: 54  TVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASIEEAETCPMAYKCMCNNKSYPVP 109

[Close]

BLAST of MS022443 vs. ExPASy TrEMBL
Match: A0A087HEB4 (Epidermal patterning factor-like protein OS=Arabis alpina OX=50452 GN=AALP_AA3G376600 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.1e-23
Identity = 50/56 (89.29%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   TVAVAGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP 57
           TV VAGSRLPDCSHACGSCSPCRLVM+SFVCA+++EAETCPMAY+CMCNNKSYPVP
Sbjct: 51  TVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASIEEAETCPMAYKCMCNNKSYPVP 106

[Close]

BLAST of MS022443 vs. TAIR 10
Match: AT2G20875.1 (epidermal patterning factor 1 )

HSP 1 Score: 117.1 bits (292), Expect = 4.6e-27
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   TVAVAGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP 57
           TV VAGSRLPDCSHACGSCSPCRLVM+SFVCA+V+EAETCPMAY+CMCNNKSYPVP
Sbjct: 49  TVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPVP 104

[Close]

BLAST of MS022443 vs. TAIR 10
Match: AT1G71866.1 (LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Putative membrane lipoprotein (TAIR:AT1G34245.1). )

HSP 1 Score: 67.8 bits (164), Expect = 3.2e-12
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 5   AGSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP 57
           +GS +PDCS+ACG C PC+LV+IS  C+A   +E CP+ Y+C+C  K Y VP
Sbjct: 121 SGSSIPDCSNACGPCKPCKLVVISSTCSA---SEACPLVYKCLCKGKYYHVP 169

[Close]

BLAST of MS022443 vs. TAIR 10
Match: AT1G34245.1 (Putative membrane lipoprotein )

HSP 1 Score: 67.4 bits (163), Expect = 4.2e-12
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 6   GSRLPDCSHACGSCSPCRLVMISFVCAAVQEAETCPMAYRCMCNNKSYPVP 57
           GS LPDCS+ACG+CSPC+ VMISF C+    AE+C + YRC C  + Y VP
Sbjct: 70  GSSLPDCSYACGACSPCKRVMISFECSV---AESCSVIYRCTCRGRYYHVP 117

The following BLAST results are available for this feature:

BLAST of MS022443 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148033.1	9.0e-25	100.00	protein EPIDERMAL PATTERNING FACTOR 1-like [Momordica charantia]	[more]
KAG7579926.1	4.9e-23	91.07	hypothetical protein ISN45_Aa03g040260 [Arabidopsis thaliana x Arabidopsis areno...	[more]
NP_179684.1	4.9e-23	91.07	epidermal patterning factor 1 [Arabidopsis thaliana] >Q8S8I4.1 RecName: Full=Pro...	[more]
XP_002886313.1	4.9e-23	91.07	protein EPIDERMAL PATTERNING FACTOR 1 [Arabidopsis lyrata subsp. lyrata] >EFH625...	[more]
CAA7014027.1	6.4e-23	89.29	unnamed protein product [Microthlaspi erraticum]	[more]

BLAST of MS022443 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8I4	6.5e-26	91.07	Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE...	[more]
C4B8C5	4.5e-11	53.85	EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q8LC53	5.9e-11	58.82	Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE...	[more]

BLAST of MS022443 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D2Y3	4.4e-25	100.00	Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A178VX97	2.4e-23	91.07	Epidermal patterning factor-like protein OS=Arabidopsis thaliana OX=3702 GN=AXX1...	[more]
D7L4L8	2.4e-23	91.07	Epidermal patterning factor-like protein OS=Arabidopsis lyrata subsp. lyrata OX=...	[more]
A0A6D2HH05	3.1e-23	89.29	Epidermal patterning factor-like protein OS=Microthlaspi erraticum OX=1685480 GN...	[more]
A0A087HEB4	3.1e-23	89.29	Epidermal patterning factor-like protein OS=Arabis alpina OX=50452 GN=AALP_AA3G3...	[more]

BLAST of MS022443 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20875.1	4.6e-27	91.07	epidermal patterning factor 1	[more]
AT1G71866.1	3.2e-12	53.85	LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Put...	[more]
AT1G34245.1	4.2e-12	58.82	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 5..54 e-value: 3.5E-16 score: 58.9
None	No IPR available	PANTHER	PTHR33109:SF41	PROTEIN EPIDERMAL PATTERNING FACTOR 1	coord: 1..56
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 1..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022443.1	MS022443.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010374	stomatal complex development