MS022412 (gene) Bitter gourd (TR) v1

Overview
NameMS022412
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold47: 3138074 .. 3138403 (-)
RNA-Seq ExpressionMS022412
SyntenyMS022412
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTCTTCTCCCGGTTCGGTTCTTGTTGCCGGTCCCCGGCGGCAGTGGCGCCGCGGCTCTACCAGGACACGGCTCCGGCGGACGAGCCCATCACGCGTGCCCGTGTGGAGGAGCAGCGCGTTGGGAGAATGCGGTGTTCGAAGTCGGGACCGGCGGCGCATTGGCGGCCTGCGCTTTCGGCGATTTTGGAGGATAATAATGCCGCTGACGCCGAGCAGTTTCAGGTGAATAAATCCGGCGAAAGGAAGCTGGAGAAGAAAGCGTCCGGCCGGCGGGCCAGGGCCATCGCCAAGTCACAAAGTTATCACGGCAGAGATGATTACTGG

mRNA sequence

ATGAAATTCTTCTCCCGGTTCGGTTCTTGTTGCCGGTCCCCGGCGGCAGTGGCGCCGCGGCTCTACCAGGACACGGCTCCGGCGGACGAGCCCATCACGCGTGCCCGTGTGGAGGAGCAGCGCGTTGGGAGAATGCGGTGTTCGAAGTCGGGACCGGCGGCGCATTGGCGGCCTGCGCTTTCGGCGATTTTGGAGGATAATAATGCCGCTGACGCCGAGCAGTTTCAGGTGAATAAATCCGGCGAAAGGAAGCTGGAGAAGAAAGCGTCCGGCCGGCGGGCCAGGGCCATCGCCAAGTCACAAAGTTATCACGGCAGAGATGATTACTGG

Coding sequence (CDS)

ATGAAATTCTTCTCCCGGTTCGGTTCTTGTTGCCGGTCCCCGGCGGCAGTGGCGCCGCGGCTCTACCAGGACACGGCTCCGGCGGACGAGCCCATCACGCGTGCCCGTGTGGAGGAGCAGCGCGTTGGGAGAATGCGGTGTTCGAAGTCGGGACCGGCGGCGCATTGGCGGCCTGCGCTTTCGGCGATTTTGGAGGATAATAATGCCGCTGACGCCGAGCAGTTTCAGGTGAATAAATCCGGCGAAAGGAAGCTGGAGAAGAAAGCGTCCGGCCGGCGGGCCAGGGCCATCGCCAAGTCACAAAGTTATCACGGCAGAGATGATTACTGG

Protein sequence

MKFFSRFGSCCRSPAAVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPALSAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYW
Homology
BLAST of MS022412 vs. NCBI nr
Match: XP_022136180.1 (uncharacterized protein LOC111007936 [Momordica charantia])

HSP 1 Score: 220.7 bits (561), Expect = 6.2e-54
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0

Query: 1   MKFFSRFGSCCRSPAAVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60
           MKFFSRFGSCCRSPA VAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL
Sbjct: 1   MKFFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60

Query: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYW 111
           SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYW
Sbjct: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYW 110

BLAST of MS022412 vs. NCBI nr
Match: XP_038888636.1 (uncharacterized protein LOC120078432 [Benincasa hispida])

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 61/110 (55.45%), Postives = 75/110 (68.18%), Query Frame = 0

Query: 1   MKFFSRFGSCCRSPAAVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60
           M FFS+F SC RS A VAPR+Y D A A+E      V+EQ V R+R SKS  AAHWRPAL
Sbjct: 1   MSFFSKFSSCWRS-AVVAPRVYLDGAVAEE------VKEQSVTRLRSSKSESAAHWRPAL 60

Query: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYW 111
           + ILED+     ++  V KSG++K EKK SGR+ R + KS S HGRD+YW
Sbjct: 61  ADILEDSK---GDRSPVKKSGKKKPEKKMSGRQDRLLTKSYSCHGRDNYW 100

BLAST of MS022412 vs. NCBI nr
Match: KAA0031624.1 (uncharacterized protein E6C27_scaffold139G003920 [Cucumis melo var. makuwa] >TYK07076.1 uncharacterized protein E5676_scaffold13G003940 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-15
Identity = 60/111 (54.05%), Postives = 70/111 (63.06%), Query Frame = 0

Query: 1   MKFFSRFGSCCRSPAAVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60
           M FFS+F SC RS AAVAPR+Y   A ++E        EQ V R R SKS  AAHWRPAL
Sbjct: 1   MSFFSKFSSCWRS-AAVAPRVYLGDAVSEEV-----KAEQSVVRPRSSKSDSAAHWRPAL 60

Query: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYH-GRDDYW 111
            AI+ED   A   Q +  KS E+K EKK SGR+ R + KS  Y+ GRDDYW
Sbjct: 61  DAIVEDGRGA---QSRWKKSREKKPEKKTSGRQGRFMTKSYGYYDGRDDYW 102

BLAST of MS022412 vs. NCBI nr
Match: XP_008455392.1 (PREDICTED: uncharacterized protein LOC103495564 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 5.7e-15
Identity = 59/111 (53.15%), Postives = 70/111 (63.06%), Query Frame = 0

Query: 1   MKFFSRFGSCCRSPAAVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60
           M FFS+F SC RS AAVAPR+Y   A ++E        EQ V R R SKS  AAHW+PAL
Sbjct: 1   MSFFSKFSSCWRS-AAVAPRVYLGDAVSEEV-----KAEQSVVRPRSSKSDSAAHWQPAL 60

Query: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYH-GRDDYW 111
            AI+ED   A   Q +  KS E+K EKK SGR+ R + KS  Y+ GRDDYW
Sbjct: 61  DAIVEDGKGA---QSRWKKSREKKPEKKTSGRQGRFMTKSYGYYDGRDDYW 102

BLAST of MS022412 vs. NCBI nr
Match: XP_031745001.1 (uncharacterized protein LOC116405215 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 3.8e-11
Identity = 52/109 (47.71%), Postives = 65/109 (59.63%), Query Frame = 0

Query: 3   FFSRFGSCCRSPAAVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPALSA 62
           F S+FGSC RS AAVAP          + +T     EQ V   R SKS  AAHWRPAL+A
Sbjct: 4   FISKFGSCWRS-AAVAPH---------DAVTDEVKAEQGVTSPRSSKSESAAHWRPALAA 63

Query: 63  ILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYH-GRDDYW 111
           I+ED+N A   +++  KS +RK EKK SG +     KS  Y+ GRD+YW
Sbjct: 64  IVEDSNGA---EWRCKKSSKRKAEKKTSGHQGSFTTKSYGYYDGRDNYW 99

BLAST of MS022412 vs. ExPASy TrEMBL
Match: A0A6J1C360 (uncharacterized protein LOC111007936 OS=Momordica charantia OX=3673 GN=LOC111007936 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.0e-54
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0

Query: 1   MKFFSRFGSCCRSPAAVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60
           MKFFSRFGSCCRSPA VAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL
Sbjct: 1   MKFFSRFGSCCRSPATVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60

Query: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYW 111
           SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYW
Sbjct: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYW 110

BLAST of MS022412 vs. ExPASy TrEMBL
Match: A0A5D3C9U7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003940 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.5e-16
Identity = 60/111 (54.05%), Postives = 70/111 (63.06%), Query Frame = 0

Query: 1   MKFFSRFGSCCRSPAAVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60
           M FFS+F SC RS AAVAPR+Y   A ++E        EQ V R R SKS  AAHWRPAL
Sbjct: 1   MSFFSKFSSCWRS-AAVAPRVYLGDAVSEEV-----KAEQSVVRPRSSKSDSAAHWRPAL 60

Query: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYH-GRDDYW 111
            AI+ED   A   Q +  KS E+K EKK SGR+ R + KS  Y+ GRDDYW
Sbjct: 61  DAIVEDGRGA---QSRWKKSREKKPEKKTSGRQGRFMTKSYGYYDGRDDYW 102

BLAST of MS022412 vs. ExPASy TrEMBL
Match: A0A1S3C217 (uncharacterized protein LOC103495564 OS=Cucumis melo OX=3656 GN=LOC103495564 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-15
Identity = 59/111 (53.15%), Postives = 70/111 (63.06%), Query Frame = 0

Query: 1   MKFFSRFGSCCRSPAAVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60
           M FFS+F SC RS AAVAPR+Y   A ++E        EQ V R R SKS  AAHW+PAL
Sbjct: 1   MSFFSKFSSCWRS-AAVAPRVYLGDAVSEEV-----KAEQSVVRPRSSKSDSAAHWQPAL 60

Query: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYH-GRDDYW 111
            AI+ED   A   Q +  KS E+K EKK SGR+ R + KS  Y+ GRDDYW
Sbjct: 61  DAIVEDGKGA---QSRWKKSREKKPEKKTSGRQGRFMTKSYGYYDGRDDYW 102

BLAST of MS022412 vs. ExPASy TrEMBL
Match: A0A0A0K279 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044930 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.8e-11
Identity = 52/109 (47.71%), Postives = 65/109 (59.63%), Query Frame = 0

Query: 3   FFSRFGSCCRSPAAVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPALSA 62
           F S+FGSC RS AAVAP          + +T     EQ V   R SKS  AAHWRPAL+A
Sbjct: 4   FISKFGSCWRS-AAVAPH---------DAVTDEVKAEQGVTSPRSSKSESAAHWRPALAA 63

Query: 63  ILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYH-GRDDYW 111
           I+ED+N A   +++  KS +RK EKK SG +     KS  Y+ GRD+YW
Sbjct: 64  IVEDSNGA---EWRCKKSSKRKAEKKTSGHQGSFTTKSYGYYDGRDNYW 99

BLAST of MS022412 vs. ExPASy TrEMBL
Match: A0A6J1GKL7 (uncharacterized protein LOC111455175 OS=Cucurbita moschata OX=3662 GN=LOC111455175 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.2e-06
Identity = 46/110 (41.82%), Postives = 58/110 (52.73%), Query Frame = 0

Query: 1   MKFFSRFGSCCRSPAAVAPRLYQDTAPADEPITRARVEEQRVGRMRCSKSGPAAHWRPAL 60
           M  FS+ GS  R  A  A R+YQ               EQ + R+  SKS  A+HWRPAL
Sbjct: 1   MPLFSKLGSRLRR-AVDARRVYQ---------------EQSLERVTSSKSESASHWRPAL 60

Query: 61  SAILEDNNAADAEQFQVNKSGERKLEKKASGRRARAIAKSQSYHGRDDYW 111
             ILED+  A   +  V KSGE+   KK S R+ R++ KS   +GRD YW
Sbjct: 61  PPILEDSKGA---RLPVKKSGEK---KKTSSRQVRSVTKS---YGRDGYW 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022136180.16.2e-5499.09uncharacterized protein LOC111007936 [Momordica charantia][more]
XP_038888636.11.4e-1855.45uncharacterized protein LOC120078432 [Benincasa hispida][more]
KAA0031624.12.0e-1554.05uncharacterized protein E6C27_scaffold139G003920 [Cucumis melo var. makuwa] >TYK... [more]
XP_008455392.15.7e-1553.15PREDICTED: uncharacterized protein LOC103495564 [Cucumis melo][more]
XP_031745001.13.8e-1147.71uncharacterized protein LOC116405215 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C3603.0e-5499.09uncharacterized protein LOC111007936 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A5D3C9U79.5e-1654.05Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C2172.8e-1553.15uncharacterized protein LOC103495564 OS=Cucumis melo OX=3656 GN=LOC103495564 PE=... [more]
A0A0A0K2791.8e-1147.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044930 PE=4 SV=1[more]
A0A6J1GKL75.2e-0641.82uncharacterized protein LOC111455175 OS=Cucurbita moschata OX=3662 GN=LOC1114551... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..110
NoneNo IPR availablePANTHERPTHR35318BNAA10G08410D PROTEINcoord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS022412.1MS022412.1mRNA