MS022408 (gene) Bitter gourd (TR) v1

Overview


Name	MS022408
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Pentatricopeptide repeat-containing protein
Location	scaffold47: 3107975 .. 3108106 (-)
RNA-Seq Expression	MS022408
Synteny	MS022408

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGGTGGAATTTGGAAGTTTGGGAACATGGATCTTGCTCGGGATGTGTTTGATAAAATGCTCGAGAGGGATTTAGTTTCCTTGAATTCTGTGATTTCTGGTTACGTTAAGAACAACAAACCAATAGAAGCT

mRNA sequence

TTAGGTGGAATTTGGAAGTTTGGGAACATGGATCTTGCTCGGGATGTGTTTGATAAAATGCTCGAGAGGGATTTAGTTTCCTTGAATTCTGTGATTTCTGGTTACGTTAAGAACAACAAACCAATAGAAGCT

Coding sequence (CDS)

TTAGGTGGAATTTGGAAGTTTGGGAACATGGATCTTGCTCGGGATGTGTTTGATAAAATGCTCGAGAGGGATTTAGTTTCCTTGAATTCTGTGATTTCTGGTTACGTTAAGAACAACAAACCAATAGAAGCT

Protein sequence

LGGIWKFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA

Homology

[Close]

BLAST of MS022408 vs. NCBI nr
Match: XP_034208439.1 (putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial [Prunus dulcis] >VVA33696.1 PREDICTED: pentatricopeptide [Prunus dulcis])

HSP 1 Score: 59.7 bits (143), Expect = 7.3e-06
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 6   KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA 45
           KFG+M LAR +FD+MLERDL+S N++ISGYVKNN P +A
Sbjct: 182 KFGDMGLARMLFDRMLERDLISWNTMISGYVKNNNPRKA 220

[Close]

BLAST of MS022408 vs. NCBI nr
Match: XP_007216378.1 (pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Prunus persica])

HSP 1 Score: 59.7 bits (143), Expect = 7.3e-06
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 6   KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA 45
           KFG+M LAR +FD+MLERDL+S N++ISGYVKNN P +A
Sbjct: 182 KFGHMGLARMLFDRMLERDLISWNTMISGYVKNNNPRKA 220

[Close]

BLAST of MS022408 vs. NCBI nr
Match: VVA33697.1 (PREDICTED: pentatricopeptide [Prunus dulcis])

HSP 1 Score: 59.7 bits (143), Expect = 7.3e-06
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 6   KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA 45
           KFG+M LAR +FD+MLERDL+S N++ISGYVKNN P +A
Sbjct: 124 KFGDMGLARMLFDRMLERDLISWNTMISGYVKNNNPRKA 162

[Close]

BLAST of MS022408 vs. NCBI nr
Match: XP_038887372.1 (pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 59.7 bits (143), Expect = 7.3e-06
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 6   KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA 45
           KFGN+D+AR VFDKM ERDL S N++ISGYV+NN  +EA
Sbjct: 192 KFGNVDVARKVFDKMPERDLTSWNTMISGYVRNNNSMEA 230

[Close]

BLAST of MS022408 vs. NCBI nr
Match: ONI18543.1 (hypothetical protein PRUPE_3G221900 [Prunus persica])

HSP 1 Score: 59.7 bits (143), Expect = 7.3e-06
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 6   KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA 45
           KFG+M LAR +FD+MLERDL+S N++ISGYVKNN P +A
Sbjct: 142 KFGHMGLARMLFDRMLERDLISWNTMISGYVKNNNPRKA 180

[Close]

BLAST of MS022408 vs. ExPASy Swiss-Prot
Match: Q3E6Q1 (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 8.4e-05
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 6   KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA 45
           K G+++ AR +FD MLER++VS NS+I  YV+N  P EA
Sbjct: 283 KCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEA 321

[Close]

BLAST of MS022408 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 3.2e-04
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 8   GNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA 45
           G++  A  VFDKM E+DLV+ NSVI+G+ +N KP EA
Sbjct: 170 GDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206

[Close]

BLAST of MS022408 vs. ExPASy Swiss-Prot
Match: Q9FLZ9 (Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E16 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 3.2e-04
Identity = 18/32 (56.25%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 7   FGNMDLARDVFDKMLERDLVSLNSVISGYVKN 39
           FG +++ARDVFD M  RD++S N++ISGY +N
Sbjct: 165 FGKVEMARDVFDVMKNRDVISWNTMISGYYRN 196

[Close]

BLAST of MS022408 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 4.2e-04
Identity = 20/38 (52.63%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 1   LGGIWKFGNMDLARDVFDKMLERDLVSLNSVISGYVKN 39
           + G  + G  +LAR +FD+M ERDLVS N +I GYV+N
Sbjct: 102 ISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRN 139

[Close]

BLAST of MS022408 vs. ExPASy Swiss-Prot
Match: O64766 (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 5.5e-04
Identity = 20/42 (47.62%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 3   GIWKFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA 45
           G+ K G +D AR +FD M ER+++S N++I+GY +NN+  EA
Sbjct: 211 GLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEA 252

[Close]

BLAST of MS022408 vs. ExPASy TrEMBL
Match: A0A5E4G1W2 (PREDICTED: pentatricopeptide OS=Prunus dulcis OX=3755 GN=ALMOND_2B007928 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 6   KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA 45
           KFG+M LAR +FD+MLERDL+S N++ISGYVKNN P +A
Sbjct: 182 KFGDMGLARMLFDRMLERDLISWNTMISGYVKNNNPRKA 220

[Close]

BLAST of MS022408 vs. ExPASy TrEMBL
Match: A0A5E4G1S8 (PREDICTED: pentatricopeptide OS=Prunus dulcis OX=3755 GN=ALMOND_2B007928 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 6   KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA 45
           KFG+M LAR +FD+MLERDL+S N++ISGYVKNN P +A
Sbjct: 124 KFGDMGLARMLFDRMLERDLISWNTMISGYVKNNNPRKA 162

[Close]

BLAST of MS022408 vs. ExPASy TrEMBL
Match: A0A251Q417 (DYW_deaminase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_3G221900 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 6   KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA 45
           KFG+M LAR +FD+MLERDL+S N++ISGYVKNN P +A
Sbjct: 142 KFGHMGLARMLFDRMLERDLISWNTMISGYVKNNNPRKA 180

[Close]

BLAST of MS022408 vs. ExPASy TrEMBL
Match: M5WUT9 (DYW_deaminase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa020947mg PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-06
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 6   KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA 45
           KFG+M LAR +FD+MLERDL+S N++ISGYVKNN P +A
Sbjct: 182 KFGHMGLARMLFDRMLERDLISWNTMISGYVKNNNPRKA 220

[Close]

BLAST of MS022408 vs. ExPASy TrEMBL
Match: A0A314Y200 (Pentatricopeptide repeat-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_03483 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-05
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 6   KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA 45
           KFG+M LAR +FD+MLERDL+S N++ISGYVKN  P +A
Sbjct: 142 KFGDMGLARMLFDRMLERDLISWNTMISGYVKNGNPRKA 180

[Close]

BLAST of MS022408 vs. TAIR 10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 6.0e-06
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 6   KFGNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA 45
           K G+++ AR +FD MLER++VS NS+I  YV+N  P EA
Sbjct: 283 KCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEA 321

[Close]

BLAST of MS022408 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 2.3e-05
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 8   GNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA 45
           G++  A  VFDKM E+DLV+ NSVI+G+ +N KP EA
Sbjct: 170 GDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206

[Close]

BLAST of MS022408 vs. TAIR 10
Match: AT4G21065.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 2.3e-05
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 8  GNMDLARDVFDKMLERDLVSLNSVISGYVKNNKPIEA 45
          G++  A  VFDKM E+DLV+ NSVI+G+ +N KP EA
Sbjct: 37 GDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 73

[Close]

BLAST of MS022408 vs. TAIR 10
Match: AT5G39350.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 2.3e-05
Identity = 18/32 (56.25%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 7   FGNMDLARDVFDKMLERDLVSLNSVISGYVKN 39
           FG +++ARDVFD M  RD++S N++ISGY +N
Sbjct: 165 FGKVEMARDVFDVMKNRDVISWNTMISGYYRN 196

[Close]

BLAST of MS022408 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 3.0e-05
Identity = 20/38 (52.63%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 1   LGGIWKFGNMDLARDVFDKMLERDLVSLNSVISGYVKN 39
           + G  + G  +LAR +FD+M ERDLVS N +I GYV+N
Sbjct: 102 ISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRN 139

The following BLAST results are available for this feature:

BLAST of MS022408 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_034208439.1	7.3e-06	69.23	putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial [P...	[more]
XP_007216378.1	7.3e-06	69.23	pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Prunus per...	[more]
VVA33697.1	7.3e-06	69.23	PREDICTED: pentatricopeptide [Prunus dulcis]	[more]
XP_038887372.1	7.3e-06	69.23	pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Benin...	[more]
ONI18543.1	7.3e-06	69.23	hypothetical protein PRUPE_3G221900 [Prunus persica]	[more]

BLAST of MS022408 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3E6Q1	8.4e-05	53.85	Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop...	[more]
A8MQA3	3.2e-04	56.76	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]
Q9FLZ9	3.2e-04	56.25	Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana OX...	[more]
Q9SY02	4.2e-04	52.63	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX...	[more]
O64766	5.5e-04	47.62	Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidop...	[more]

BLAST of MS022408 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5E4G1W2	3.6e-06	69.23	PREDICTED: pentatricopeptide OS=Prunus dulcis OX=3755 GN=ALMOND_2B007928 PE=3 SV...	[more]
A0A5E4G1S8	3.6e-06	69.23	PREDICTED: pentatricopeptide OS=Prunus dulcis OX=3755 GN=ALMOND_2B007928 PE=3 SV...	[more]
A0A251Q417	3.6e-06	69.23	DYW_deaminase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_3G221...	[more]
M5WUT9	3.6e-06	69.23	DYW_deaminase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa02...	[more]
A0A314Y200	1.8e-05	66.67	Pentatricopeptide repeat-containing protein OS=Prunus yedoensis var. nudiflora O...	[more]

BLAST of MS022408 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11290.1	6.0e-06	53.85	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G21065.1	2.3e-05	56.76	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21065.2	2.3e-05	56.76	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G39350.1	2.3e-05	56.25	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G02750.1	3.0e-05	52.63	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..44 e-value: 9.0E-8 score: 33.6
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 26..44 e-value: 0.0016 score: 18.6 coord: 6..24 e-value: 0.011 score: 15.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 8..26 e-value: 0.002 score: 16.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022408.1	MS022408.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding