MS022388 (gene) Bitter gourd (TR) v1

Overview
NameMS022388
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L6
Locationscaffold47: 2990525 .. 2991634 (-)
RNA-Seq ExpressionMS022388
SyntenyMS022388
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCAATTTTCGGTCTACATTTTTGGGAGAGAAAAATGGATTCTCTGTTTCTACAATGCCTGTATGTCACATTGGTCTCTTGAGGAAGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCTATTCAAGTGCCATCCAATGTAACCATCGCACTGCAGGGCCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAGCTCTCAATACTTTATCCAAGAGAAGTGAAGATTGAGAGGGAAGATTCTGGGATCTTAAGGGTTAAGAAGGCAGTGGAGACAAGAAGAGCCAAGCAAATGCATGGGCTTTTCAGGTAATCTCATCATGGATTTAATATTCTATGATTTTGTCTCTTCCTCTTAAGTTTTACTTCACATGGGTCATTCCGTTTTTACGTATCTTTGCCAATTTTTGTTGCCTCCTATGTAGCTGCCCTACTTTACTATCAGCTTCAAAAGAGTCTTGCTTCTGTAATCAAGTTGATCACTTTTTAGTCAATAATTATTGAAATACTAGTATGGATGAAAATACTTGTGGAGTGGCCAACTCTAGATATTTGCTCCTTTTTAATGATTATTTGTGGACGGCTGGAAAGAAACCAATTAATCTCTCTTCAAATTCTGAAAAATCCAAGATGACTTCATGTTGTCACTGCAAACAACCAGCTGCTGTGCTCAGTCATTTGAAATAAAGTTGAATGATGGGAAAAGAGTAAAATGTTTTTTCTCTTACCAAATGTAGCCATTCTGAATATGACCATTTCAATTGATCTACTCAGGACGCTTACAGATAATATGGTGGTAGGAGTATCCAGGGGGTTTGAGAAGAAACTTCAGTTGGTCGGTGTTGGTTATCGAGCAATGTTAGAAGGAAAAGACTTGGTATTAAATCTCGGGTTCTCTCATCCAGTTAGAATGGCCATTCCTGACGGTCTTCAAGTAAAGGTGGAAGAAAACACCAGAATCACGGTTAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCCGCTTCTATTAGACAATGGAGACCCCCGGAACCGTATAAGGGTAAAGGAGTGAAATATGCTGATGAAGTTGTCAGAAGAAAGGAGGGGAAAGCAGGGAAGAAGAAG

mRNA sequence

AGCAATTTTCGGTCTACATTTTTGGGAGAGAAAAATGGATTCTCTGTTTCTACAATGCCTGTATGTCACATTGGTCTCTTGAGGAAGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCTATTCAAGTGCCATCCAATGTAACCATCGCACTGCAGGGCCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAGCTCTCAATACTTTATCCAAGAGAAGTGAAGATTGAGAGGGAAGATTCTGGGATCTTAAGGGTTAAGAAGGCAGTGGAGACAAGAAGAGCCAAGCAAATGCATGGGCTTTTCAGGACGCTTACAGATAATATGGTGGTAGGAGTATCCAGGGGGTTTGAGAAGAAACTTCAGTTGGTCGGTGTTGGTTATCGAGCAATGTTAGAAGGAAAAGACTTGGTATTAAATCTCGGGTTCTCTCATCCAGTTAGAATGGCCATTCCTGACGGTCTTCAAGTAAAGGTGGAAGAAAACACCAGAATCACGGTTAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCCGCTTCTATTAGACAATGGAGACCCCCGGAACCGTATAAGGGTAAAGGAGTGAAATATGCTGATGAAGTTGTCAGAAGAAAGGAGGGGAAAGCAGGGAAGAAGAAG

Coding sequence (CDS)

AGCAATTTTCGGTCTACATTTTTGGGAGAGAAAAATGGATTCTCTGTTTCTACAATGCCTGTATGTCACATTGGTCTCTTGAGGAAGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCTATTCAAGTGCCATCCAATGTAACCATCGCACTGCAGGGCCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAGCTCTCAATACTTTATCCAAGAGAAGTGAAGATTGAGAGGGAAGATTCTGGGATCTTAAGGGTTAAGAAGGCAGTGGAGACAAGAAGAGCCAAGCAAATGCATGGGCTTTTCAGGACGCTTACAGATAATATGGTGGTAGGAGTATCCAGGGGGTTTGAGAAGAAACTTCAGTTGGTCGGTGTTGGTTATCGAGCAATGTTAGAAGGAAAAGACTTGGTATTAAATCTCGGGTTCTCTCATCCAGTTAGAATGGCCATTCCTGACGGTCTTCAAGTAAAGGTGGAAGAAAACACCAGAATCACGGTTAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCCGCTTCTATTAGACAATGGAGACCCCCGGAACCGTATAAGGGTAAAGGAGTGAAATATGCTGATGAAGTTGTCAGAAGAAAGGAGGGGAAAGCAGGGAAGAAGAAG

Protein sequence

SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTIALQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Homology
[Close]
BLAST of MS022388 vs. NCBI nr
Match: XP_022136314.1 (50S ribosomal protein L6, chloroplastic [Momordica charantia])

HSP 1 Score: 426.0 bits (1094), Expect = 1.9e-115
Identity = 214/215 (99.53%), Postives = 214/215 (99.53%), Query Frame = 0 

Query: 1   SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTIALQGQDLKV 60
           SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNV IALQGQDLKV
Sbjct: 12  SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVIIALQGQDLKV 71

Query: 61  KGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEK 120
           KGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEK
Sbjct: 72  KGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEK 131

Query: 121 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA 180
           KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA
Sbjct: 132 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA 191

Query: 181 ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 216
           ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 192 ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

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BLAST of MS022388 vs. NCBI nr
Match: XP_008455431.1 (PREDICTED: 50S ribosomal protein L6, chloroplastic [Cucumis melo])

HSP 1 Score: 413.7 bits (1062), Expect = 9.8e-112
Identity = 202/215 (93.95%), Postives = 211/215 (98.14%), Query Frame = 0 

Query: 1   SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTIALQGQDLKV 60
           +NFRSTFLGEKNGF VS MPVCHIGLLRKTIECKESRIGKQPIQVPSNVTI LQGQDLKV
Sbjct: 19  NNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKV 78

Query: 61  KGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEK 120
           KGPLGELSILYPREVKIEREDSGI+RVKKA+ETRRA QMHGLFRTLTDNMVVGVS+GFEK
Sbjct: 79  KGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEK 138

Query: 121 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA 180
           KLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIPDG+Q+KVEENTRITVSGYDKCAIGQFA
Sbjct: 139 KLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCAIGQFA 198

Query: 181 ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 216
           ASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 199 ASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]
BLAST of MS022388 vs. NCBI nr
Match: XP_004144493.1 (50S ribosomal protein L6, chloroplastic [Cucumis sativus] >KGN43529.1 hypothetical protein Csa_020508 [Cucumis sativus])

HSP 1 Score: 410.2 bits (1053), Expect = 1.1e-110
Identity = 200/215 (93.02%), Postives = 210/215 (97.67%), Query Frame = 0 

Query: 1   SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTIALQGQDLKV 60
           +NFRSTFLGEKNGF VS MP CHIGLLRKTIECKESRIGKQPIQVPS+VTI LQGQDLKV
Sbjct: 19  NNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQPIQVPSSVTITLQGQDLKV 78

Query: 61  KGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEK 120
           KGPLGELSILYPREVKIEREDSGI+RVKKA+ETRRA QMHGLFRTLTDNMVVGVS+GFEK
Sbjct: 79  KGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEK 138

Query: 121 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA 180
           KLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIPDG+Q+KVEENTRITVSGYDKCAIGQFA
Sbjct: 139 KLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCAIGQFA 198

Query: 181 ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 216
           ASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 199 ASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]
BLAST of MS022388 vs. NCBI nr
Match: KAG6572299.1 (50S ribosomal protein L6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 409.8 bits (1052), Expect = 1.4e-110
Identity = 203/215 (94.42%), Postives = 210/215 (97.67%), Query Frame = 0 

Query: 1   SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTIALQGQDLKV 60
           +NFRSTFLGEKNGF++STMPV H G+LRKTIECKESRIGKQPIQVPSNV I LQGQDLKV
Sbjct: 17  NNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQPIQVPSNVNITLQGQDLKV 76

Query: 61  KGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEK 120
           KGPLGELSILYPREVKIEREDSGILRVKKA+ETRRA QMHGLFRTLTDNMVVGVS+GFEK
Sbjct: 77  KGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEK 136

Query: 121 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA 180
           KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQVKVEENTRITVSGYDKCAIGQFA
Sbjct: 137 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFA 196

Query: 181 ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 216
           ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 197 ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 231

[Close]
BLAST of MS022388 vs. NCBI nr
Match: XP_038888704.1 (50S ribosomal protein L6, chloroplastic [Benincasa hispida])

HSP 1 Score: 409.5 bits (1051), Expect = 1.8e-110
Identity = 200/215 (93.02%), Postives = 211/215 (98.14%), Query Frame = 0 

Query: 1   SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTIALQGQDLKV 60
           +NFRSTFLGE+NGF VS MPVCHIG+LRKTIECKESRIGKQPI VPSNVTI+LQGQDLKV
Sbjct: 19  NNFRSTFLGERNGFYVSAMPVCHIGVLRKTIECKESRIGKQPIPVPSNVTISLQGQDLKV 78

Query: 61  KGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEK 120
           KGPLGELSILYPRE+KIEREDSGI+RVKKA+ETRRA QMHGLFRTLTDNMVVGVS+GFEK
Sbjct: 79  KGPLGELSILYPREIKIEREDSGIIRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEK 138

Query: 121 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA 180
           KLQLVGVGYRAMLEGKDLVLNLGFSHPV+MAIPDG+QVKVEENTRITVSGYDKCAIGQFA
Sbjct: 139 KLQLVGVGYRAMLEGKDLVLNLGFSHPVKMAIPDGIQVKVEENTRITVSGYDKCAIGQFA 198

Query: 181 ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 216
           ASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 199 ASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]
BLAST of MS022388 vs. ExPASy Swiss-Prot
Match: O23049 (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 1.9e-94
Identity = 168/212 (79.25%), Postives = 190/212 (89.62%), Query Frame = 0 

Query: 4   RSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTIALQGQDLKVKGP 63
           RS FLG++N F VS+ P   +G   KTIECKESRIGKQPI VPSNVTIAL+GQDLKVKGP
Sbjct: 12  RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNVTIALEGQDLKVKGP 71

Query: 64  LGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEKKLQ 123
           LGEL++ YPREV++ +E+SG LRVKK VETRRA QMHGLFRTLTDNMVVGVS+GFEKKL 
Sbjct: 72  LGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLI 131

Query: 124 LVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAASI 183
           LVGVGYRA ++GK+LVLNLGFSHPV+M IPD L+VKVEENTRITVSGYDK  IGQFAA++
Sbjct: 132 LVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATV 191

Query: 184 RQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 216
           R+WRPPEPYKGKGVKY+DE+VRRKEGKAGKKK
Sbjct: 192 RKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

[Close]
BLAST of MS022388 vs. ExPASy Swiss-Prot
Match: P82193 (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2)

HSP 1 Score: 338.6 bits (867), Expect = 5.2e-92
Identity = 167/215 (77.67%), Postives = 190/215 (88.37%), Query Frame = 0 

Query: 1   SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTIALQGQDLKV 60
           S+ +S FLG K   S S +PV  IG  RK+++CKESRIGKQPI VP+NV IA++GQDLKV
Sbjct: 7   SHMKSVFLGMKVEISTS-VPVTRIGFWRKSVDCKESRIGKQPITVPANVAIAMEGQDLKV 66

Query: 61  KGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEK 120
           KGPLGELSI YPREV +E+++SG LRV+KAVETRRA QMHGLFRTLTDNMVVGVS+GFEK
Sbjct: 67  KGPLGELSITYPREVLVEKQESGFLRVRKAVETRRANQMHGLFRTLTDNMVVGVSKGFEK 126

Query: 121 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA 180
           KLQLVGVGYRA +EGKDL+L+LGFSHPVRMAIPD LQVKVEENT++TVSG DK  +GQFA
Sbjct: 127 KLQLVGVGYRATVEGKDLILSLGFSHPVRMAIPDELQVKVEENTKVTVSGRDKSVVGQFA 186

Query: 181 ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 216
           A+IR WRPPEPYKGKGV+Y DEVVRRKEGKAGKKK
Sbjct: 187 ATIRSWRPPEPYKGKGVRYVDEVVRRKEGKAGKKK 220

[Close]
BLAST of MS022388 vs. ExPASy Swiss-Prot
Match: B0C1E7 (50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplF PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.7e-50
Identity = 103/179 (57.54%), Postives = 133/179 (74.30%), Query Frame = 0 

Query: 36  SRIGKQPIQVPSNVTIALQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKAVETRR 95
           SRIGK PI +P  V + ++GQ + VKGP GELS     EV IE+ D+ ++ V +  E+R 
Sbjct: 2   SRIGKVPIPIPDKVNVTIKGQAVTVKGPKGELSREITPEVAIEQADN-LVTVTRRNESRI 61

Query: 96  AKQMHGLFRTLTDNMVVGVSRGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDG 155
           A+Q HGL RTL  NMV GVS+GFEKKLQ+ GVGYRA ++G++L+LN+G+S+PV +  P+G
Sbjct: 62  ARQRHGLSRTLIANMVEGVSKGFEKKLQIQGVGYRAQVQGRNLILNVGYSNPVTIEPPEG 121

Query: 156 LQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKK 215
           +QV VE NT + VSG +K  +G  AA IR  RPPEPYKGKG++YADE VRRK GKAGKK
Sbjct: 122 VQVAVESNTNVIVSGINKEVVGNTAARIRAVRPPEPYKGKGIRYADEYVRRKVGKAGKK 179

[Close]
BLAST of MS022388 vs. ExPASy Swiss-Prot
Match: B1WQS5 (50S ribosomal protein L6 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rplF PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.2e-50
Identity = 98/179 (54.75%), Postives = 128/179 (71.51%), Query Frame = 0 

Query: 36  SRIGKQPIQVPSNVTIALQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKAVETRR 95
           SRIGK+PI +P+ VTI ++GQ + VKGP G L +  P EV + +E   +  V++  ++R 
Sbjct: 2   SRIGKKPIPLPNKVTIDIKGQHIAVKGPKGSLELDLPSEVTVNQEGETV-EVQRVDDSRT 61

Query: 96  AKQMHGLFRTLTDNMVVGVSRGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDG 155
           A++ HGLFRTL  NM+ GVS+GFEK+L + GVGYRA  +G  L LN+G+S PV M +P G
Sbjct: 62  ARERHGLFRTLVANMIQGVSQGFEKRLNIQGVGYRAQAQGSKLTLNVGYSKPVEMTMPQG 121

Query: 156 LQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKK 215
           + V VE NT++ VSG DK  +G  AA IR  RPPEPYKGKG++Y DE VRRK GKAGKK
Sbjct: 122 INVAVENNTQVVVSGIDKEIVGNIAAKIRGVRPPEPYKGKGIRYQDEYVRRKAGKAGKK 179

[Close]
BLAST of MS022388 vs. ExPASy Swiss-Prot
Match: B7KI01 (50S ribosomal protein L6 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=rplF PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.2e-50
Identity = 100/179 (55.87%), Postives = 128/179 (71.51%), Query Frame = 0 

Query: 36  SRIGKQPIQVPSNVTIALQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKAVETRR 95
           SRIGK+PI +P+ VT+ + G  + VKGP GEL    P  V +E +D G+LRV +  ++R 
Sbjct: 2   SRIGKRPITIPNKVTVNIDGSHVAVKGPKGELQRTLPTLVIVE-QDEGVLRVVRQDDSRT 61

Query: 96  AKQMHGLFRTLTDNMVVGVSRGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDG 155
           A+Q HGL RTL  NMV GVS+GFEK+L++ GVGYRA  +G  L LN+G+S PV M +P G
Sbjct: 62  ARQRHGLCRTLVSNMVEGVSKGFEKRLEIQGVGYRAAAQGSKLTLNVGYSKPVEMDMPSG 121

Query: 156 LQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKK 215
           + V VE+NT IT++G DK  +G  AA IR  RPPEPYKGKG++Y  EVVRRK GK GKK
Sbjct: 122 IGVAVEKNTEITITGIDKEIVGNVAAKIRAVRPPEPYKGKGIRYKGEVVRRKAGKTGKK 179

[Close]
BLAST of MS022388 vs. ExPASy TrEMBL
Match: A0A6J1C3Z5 (50S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008030 PE=3 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 9.2e-116
Identity = 214/215 (99.53%), Postives = 214/215 (99.53%), Query Frame = 0 

Query: 1   SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTIALQGQDLKV 60
           SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNV IALQGQDLKV
Sbjct: 12  SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVIIALQGQDLKV 71

Query: 61  KGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEK 120
           KGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEK
Sbjct: 72  KGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEK 131

Query: 121 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA 180
           KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA
Sbjct: 132 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA 191

Query: 181 ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 216
           ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 192 ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]
BLAST of MS022388 vs. ExPASy TrEMBL
Match: A0A1S3C0W5 (50S ribosomal protein L6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495590 PE=3 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 4.7e-112
Identity = 202/215 (93.95%), Postives = 211/215 (98.14%), Query Frame = 0 

Query: 1   SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTIALQGQDLKV 60
           +NFRSTFLGEKNGF VS MPVCHIGLLRKTIECKESRIGKQPIQVPSNVTI LQGQDLKV
Sbjct: 19  NNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKV 78

Query: 61  KGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEK 120
           KGPLGELSILYPREVKIEREDSGI+RVKKA+ETRRA QMHGLFRTLTDNMVVGVS+GFEK
Sbjct: 79  KGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEK 138

Query: 121 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA 180
           KLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIPDG+Q+KVEENTRITVSGYDKCAIGQFA
Sbjct: 139 KLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCAIGQFA 198

Query: 181 ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 216
           ASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 199 ASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]
BLAST of MS022388 vs. ExPASy TrEMBL
Match: A0A0A0K3K9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044200 PE=3 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 5.2e-111
Identity = 200/215 (93.02%), Postives = 210/215 (97.67%), Query Frame = 0 

Query: 1   SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTIALQGQDLKV 60
           +NFRSTFLGEKNGF VS MP CHIGLLRKTIECKESRIGKQPIQVPS+VTI LQGQDLKV
Sbjct: 19  NNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQPIQVPSSVTITLQGQDLKV 78

Query: 61  KGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEK 120
           KGPLGELSILYPREVKIEREDSGI+RVKKA+ETRRA QMHGLFRTLTDNMVVGVS+GFEK
Sbjct: 79  KGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEK 138

Query: 121 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA 180
           KLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIPDG+Q+KVEENTRITVSGYDKCAIGQFA
Sbjct: 139 KLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCAIGQFA 198

Query: 181 ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 216
           ASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 199 ASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]
BLAST of MS022388 vs. ExPASy TrEMBL
Match: A0A6J1GLT4 (50S ribosomal protein L6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455470 PE=3 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 8.9e-111
Identity = 202/215 (93.95%), Postives = 210/215 (97.67%), Query Frame = 0 

Query: 1   SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTIALQGQDLKV 60
           +NFRSTFLGEKNGF++STMPV H G+LRKTIECKESRIGKQPIQVPSNV I LQGQDLKV
Sbjct: 17  NNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQPIQVPSNVNITLQGQDLKV 76

Query: 61  KGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEK 120
           KGPLGELSILYPREVKIEREDSGILRVKKA+ETRRA QMHGLFRTLTDNMVVGVS+GFEK
Sbjct: 77  KGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEK 136

Query: 121 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA 180
           KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQVKVEENTRITVSGYDKCAIGQFA
Sbjct: 137 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFA 196

Query: 181 ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 216
           ASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 197 ASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

[Close]
BLAST of MS022388 vs. ExPASy TrEMBL
Match: A0A6J1ER61 (50S ribosomal protein L6, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437054 PE=3 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 8.9e-111
Identity = 205/215 (95.35%), Postives = 209/215 (97.21%), Query Frame = 0 

Query: 1   SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTIALQGQDLKV 60
           SNFRSTFLGEKNGFS STMPV HI  LRKTIECKESRIGKQPIQVPSNVTI LQGQDLKV
Sbjct: 12  SNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKV 71

Query: 61  KGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEK 120
           KGPLGELS+LYPREVKIER+DSGILRVKKA+ETRRA QMHGLFRTLTDNMVVGVS+GFEK
Sbjct: 72  KGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEK 131

Query: 121 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA 180
           KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA
Sbjct: 132 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA 191

Query: 181 ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 216
           ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK
Sbjct: 192 ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]
BLAST of MS022388 vs. TAIR 10
Match: AT1G05190.1 (Ribosomal protein L6 family )

HSP 1 Score: 346.7 bits (888), Expect = 1.4e-95
Identity = 168/212 (79.25%), Postives = 190/212 (89.62%), Query Frame = 0 

Query: 4   RSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVTIALQGQDLKVKGP 63
           RS FLG++N F VS+ P   +G   KTIECKESRIGKQPI VPSNVTIAL+GQDLKVKGP
Sbjct: 12  RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNVTIALEGQDLKVKGP 71

Query: 64  LGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEKKLQ 123
           LGEL++ YPREV++ +E+SG LRVKK VETRRA QMHGLFRTLTDNMVVGVS+GFEKKL 
Sbjct: 72  LGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLI 131

Query: 124 LVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAASI 183
           LVGVGYRA ++GK+LVLNLGFSHPV+M IPD L+VKVEENTRITVSGYDK  IGQFAA++
Sbjct: 132 LVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATV 191

Query: 184 RQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 216
           R+WRPPEPYKGKGVKY+DE+VRRKEGKAGKKK
Sbjct: 192 RKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

[Close]
BLAST of MS022388 vs. TAIR 10
Match: AT2G18400.1 (ribosomal protein L6 family protein )

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-20
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 0 

Query: 118 FEKKLQLVGVGYRAMLE--GKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCA 177
           F + L++VGVGY+A  E  G+ L L LG+SH V +A+P  ++V   +N  +  +G DK  
Sbjct: 5   FFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGIDKQR 64

Query: 178 IGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGK 214
           + QFAA++R  +PPEPYKGKG+ Y DEVV++K+GK  K
Sbjct: 65  VHQFAATVRSCKPPEPYKGKGIMYTDEVVKKKQGKKSK 102

The following BLAST results are available for this feature:
BLAST of MS022388 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022136314.11.9e-11599.5350S ribosomal protein L6, chloroplastic [Momordica charantia][more]
XP_008455431.19.8e-11293.95PREDICTED: 50S ribosomal protein L6, chloroplastic [Cucumis melo][more]
XP_004144493.11.1e-11093.0250S ribosomal protein L6, chloroplastic [Cucumis sativus] >KGN43529.1 hypothetic... [more]
KAG6572299.11.4e-11094.4250S ribosomal protein L6, chloroplastic, partial [Cucurbita argyrosperma subsp. ... [more]
XP_038888704.11.8e-11093.0250S ribosomal protein L6, chloroplastic [Benincasa hispida][more]
BLAST of MS022388 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O230491.9e-9479.2550S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 ... [more]
P821935.2e-9277.6750S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=... [more]
B0C1E71.7e-5057.5450S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 G... [more]
B1WQS52.2e-5054.7550S ribosomal protein L6 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) O... [more]
B7KI012.2e-5055.8750S ribosomal protein L6 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN... [more]
BLAST of MS022388 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C3Z59.2e-11699.5350S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A1S3C0W54.7e-11293.9550S ribosomal protein L6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495590 ... [more]
A0A0A0K3K95.2e-11193.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044200 PE=3 SV=1[more]
A0A6J1GLT48.9e-11193.9550S ribosomal protein L6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1ER618.9e-11195.3550S ribosomal protein L6, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662... [more]
BLAST of MS022388 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G05190.11.4e-9579.25Ribosomal protein L6 family [more]
AT2G18400.11.4e-2047.96ribosomal protein L6 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019906Ribosomal protein L6, bacterial-typePRINTSPR00059RIBOSOMALL6coord: 106..131
score: 61.04
coord: 134..150
score: 49.15
coord: 176..197
score: 66.42
IPR019906Ribosomal protein L6, bacterial-typeTIGRFAMTIGR03654TIGR03654coord: 36..211
e-value: 4.3E-71
score: 236.2
IPR019906Ribosomal protein L6, bacterial-typeHAMAPMF_01365_BRibosomal_L6_Bcoord: 35..211
score: 37.014084
IPR000702Ribosomal protein L6PIRSFPIRSF002162RPL6p_RPL6a_RPL9e_RPL9ocoord: 34..212
e-value: 7.4E-48
score: 160.4
IPR000702Ribosomal protein L6PANTHERPTHR1165560S/50S RIBOSOMAL PROTEIN L6/L9coord: 4..215
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 118..215
e-value: 3.8E-41
score: 141.1
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 34..117
e-value: 1.5E-25
score: 91.4
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 36..117
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 118..211
IPR020040Ribosomal protein L6, alpha-beta domainPFAMPF00347Ribosomal_L6coord: 125..199
e-value: 2.7E-19
score: 69.6
coord: 45..117
e-value: 1.2E-14
score: 54.7
NoneNo IPR availablePANTHERPTHR11655:SF38BNAA10G03220D PROTEINcoord: 4..215
IPR002358Ribosomal protein L6, conserved sitePROSITEPS00525RIBOSOMAL_L6_1coord: 189..197

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS022388.1MS022388.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome