MS022330 (gene) Bitter gourd (TR) v1

Overview


Name	MS022330
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Calcium-binding EF-hand family protein
Location	scaffold47: 2611101 .. 2611517 (-)
RNA-Seq Expression	MS022330
Synteny	MS022330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGTAGAAATTCTAGACAGCGCCACCATAATCAACTTCGTGGAAGACGAGGAAGCATTCGGCGCGTGGATCAGAGAGCGTTTCAGGCACCTCGACGCCGACCGTGACGGCGTGCTCTCCTACGCCGAGATGCTGCAGGAGTTGCACAGCCTCAGAGTCTACGAAACCCACTTCGGGGTCGATGCGAAACCCGACCCCGACGAGCTCTCCCGCCTCTACGGGGCCGTGTTCACGCAGTTTGATCGGAACTCAAACGGAGAAGTTGATCTGGAGGAGTTCATGGCGGGAACTAAGAGGATCATGGTGGCCATTGCTGAGGGAATGGGATTCTTGCCGCTCCAAATGGCGTTGGAAGAAGATGGATTCTTGATGAAAGCCGTCGATCCGAGAAAAGCCGCCAAAGTGGCTGCTAAT

mRNA sequence

ATGAGCGTAGAAATTCTAGACAGCGCCACCATAATCAACTTCGTGGAAGACGAGGAAGCATTCGGCGCGTGGATCAGAGAGCGTTTCAGGCACCTCGACGCCGACCGTGACGGCGTGCTCTCCTACGCCGAGATGCTGCAGGAGTTGCACAGCCTCAGAGTCTACGAAACCCACTTCGGGGTCGATGCGAAACCCGACCCCGACGAGCTCTCCCGCCTCTACGGGGCCGTGTTCACGCAGTTTGATCGGAACTCAAACGGAGAAGTTGATCTGGAGGAGTTCATGGCGGGAACTAAGAGGATCATGGTGGCCATTGCTGAGGGAATGGGATTCTTGCCGCTCCAAATGGCGTTGGAAGAAGATGGATTCTTGATGAAAGCCGTCGATCCGAGAAAAGCCGCCAAAGTGGCTGCTAAT

Coding sequence (CDS)

ATGAGCGTAGAAATTCTAGACAGCGCCACCATAATCAACTTCGTGGAAGACGAGGAAGCATTCGGCGCGTGGATCAGAGAGCGTTTCAGGCACCTCGACGCCGACCGTGACGGCGTGCTCTCCTACGCCGAGATGCTGCAGGAGTTGCACAGCCTCAGAGTCTACGAAACCCACTTCGGGGTCGATGCGAAACCCGACCCCGACGAGCTCTCCCGCCTCTACGGGGCCGTGTTCACGCAGTTTGATCGGAACTCAAACGGAGAAGTTGATCTGGAGGAGTTCATGGCGGGAACTAAGAGGATCATGGTGGCCATTGCTGAGGGAATGGGATTCTTGCCGCTCCAAATGGCGTTGGAAGAAGATGGATTCTTGATGAAAGCCGTCGATCCGAGAAAAGCCGCCAAAGTGGCTGCTAAT

Protein sequence

MSVEILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFGVDAKPDPDELSRLYGAVFTQFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEEDGFLMKAVDPRKAAKVAAN

Homology

[Close]

BLAST of MS022330 vs. NCBI nr
Match: XP_022135904.1 (uncharacterized protein LOC111007741 [Momordica charantia])

HSP 1 Score: 256.9 bits (655), Expect = 9.9e-65
Identity = 128/133 (96.24%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MSVEILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFG 60
           MSVEILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFG
Sbjct: 1   MSVEILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFG 60

Query: 61  VDAKPDPDELSRLYGAVFTQFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEE 120
           VDAKPDPDELSRLYGAVF QFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEE
Sbjct: 61  VDAKPDPDELSRLYGAVFMQFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEE 120

Query: 121 DGFLMKAVDPRKA 134
           DGFLMKAV   K+
Sbjct: 121 DGFLMKAVRSEKS 133

[Close]

BLAST of MS022330 vs. NCBI nr
Match: XP_038887184.1 (uncharacterized protein LOC120077371 [Benincasa hispida])

HSP 1 Score: 203.8 bits (517), Expect = 1.0e-48
Identity = 100/135 (74.07%), Postives = 113/135 (83.70%), Query Frame = 0


Query: 1   MSVEILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFG 60
           MSVE+LD ATI+NFVEDEEAF  W RE F HLD D DG LSYAEML+ELHSLRV E  FG
Sbjct: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFNHLDTDGDGFLSYAEMLKELHSLRVSEADFG 60

Query: 61  VDAKPDPDELSRLYGAVFTQFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEE 120
            D KPD D+LSRLYGAVF QFDR+SNG+VD++EFM G K +M+AIAEGMGFLP+QMALE+
Sbjct: 61  TDVKPDADDLSRLYGAVFGQFDRDSNGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120

Query: 121 DGFLMKAVDPRKAAK 136
           DGFLMKAV  R+A K
Sbjct: 121 DGFLMKAVQ-REATK 134

[Close]

BLAST of MS022330 vs. NCBI nr
Match: KAE8647336.1 (hypothetical protein Csa_003380 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-47
Identity = 95/137 (69.34%), Postives = 117/137 (85.40%), Query Frame = 0


Query: 1   MSVEILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFG 60
           MSVEILDSATI+NFVED+ AFGA+IR+RF HLD +RDG+LSY+EML+ELH+LRV+ETHFG
Sbjct: 31  MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 90

Query: 61  VDAKPDPDELSRLYGAVFTQFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEE 120
           +D KPDPDELS +Y ++F QFDR+S+G VDL+EF A TKR+M+A+A GMGFLP+QM LEE
Sbjct: 91  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 150

Query: 121 DGFLMKAVDPRKAAKVA 138
             FLMKAV+   A   A
Sbjct: 151 GSFLMKAVERETAITAA 167

[Close]

BLAST of MS022330 vs. NCBI nr
Match: XP_011657544.1 (uncharacterized protein LOC105435869 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-47
Identity = 95/137 (69.34%), Postives = 117/137 (85.40%), Query Frame = 0


Query: 1   MSVEILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFG 60
           MSVEILDSATI+NFVED+ AFGA+IR+RF HLD +RDG+LSY+EML+ELH+LRV+ETHFG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  VDAKPDPDELSRLYGAVFTQFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEE 120
           +D KPDPDELS +Y ++F QFDR+S+G VDL+EF A TKR+M+A+A GMGFLP+QM LEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 DGFLMKAVDPRKAAKVA 138
             FLMKAV+   A   A
Sbjct: 121 GSFLMKAVERETAITAA 137

[Close]

BLAST of MS022330 vs. NCBI nr
Match: XP_038888297.1 (uncharacterized protein LOC120078146 [Benincasa hispida])

HSP 1 Score: 198.4 bits (503), Expect = 4.2e-47
Identity = 96/138 (69.57%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 1   MSVEILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFG 60
           MSVEILDSATI+NFVED+ AFGA+IR+RF HLD + DG+LSY EML+ELH+LRV+ETHFG
Sbjct: 54  MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNHDGLLSYTEMLEELHTLRVFETHFG 113

Query: 61  VDAKPDPDELSRLYGAVFTQFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEE 120
           +D KPDPDELS +Y ++F QFDR+S+G VDL+EFMA TKR+M+ +A GMGFLP+QM LEE
Sbjct: 114 IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFMAETKRMMLDMANGMGFLPVQMVLEE 173

Query: 121 DGFLMKAVDPRKAAKVAA 139
             FLMKAV+ R+ A +AA
Sbjct: 174 GSFLMKAVE-RETAIMAA 190

[Close]

BLAST of MS022330 vs. ExPASy Swiss-Prot
Match: Q09711 (Calcium-binding protein NCS-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ncs1 PE=1 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 7.8e-04
Identity = 24/73 (32.88%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 29  FRHLDADRDGVLSYAEMLQELHSLRVYETHFGVDAKP-DPDELSRLYGAVFTQFDRNSNG 88
           F+  D D +G++SY EML+ + +  +Y+    +   P D D   +    +F   D+N +G
Sbjct: 105 FQLYDLDNNGLISYDEMLRIVDA--IYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDG 164

Query: 89  EVDLEEFMAGTKR 101
           ++ LEEF  G+KR
Sbjct: 165 QLTLEEFCEGSKR 175

[Close]

BLAST of MS022330 vs. ExPASy TrEMBL
Match: A0A6J1C2T1 (uncharacterized protein LOC111007741 OS=Momordica charantia OX=3673 GN=LOC111007741 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.8e-65
Identity = 128/133 (96.24%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MSVEILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFG 60
           MSVEILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFG
Sbjct: 1   MSVEILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFG 60

Query: 61  VDAKPDPDELSRLYGAVFTQFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEE 120
           VDAKPDPDELSRLYGAVF QFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEE
Sbjct: 61  VDAKPDPDELSRLYGAVFMQFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEE 120

Query: 121 DGFLMKAVDPRKA 134
           DGFLMKAV   K+
Sbjct: 121 DGFLMKAVRSEKS 133

[Close]

BLAST of MS022330 vs. ExPASy TrEMBL
Match: A0A0A0KHT7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G418660 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 5.3e-48
Identity = 95/137 (69.34%), Postives = 117/137 (85.40%), Query Frame = 0


Query: 1   MSVEILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFG 60
           MSVEILDSATI+NFVED+ AFGA+IR+RF HLD +RDG+LSY+EML+ELH+LRV+ETHFG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  VDAKPDPDELSRLYGAVFTQFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEE 120
           +D KPDPDELS +Y ++F QFDR+S+G VDL+EF A TKR+M+A+A GMGFLP+QM LEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 DGFLMKAVDPRKAAKVA 138
             FLMKAV+   A   A
Sbjct: 121 GSFLMKAVERETAITAA 137

[Close]

BLAST of MS022330 vs. ExPASy TrEMBL
Match: A0A5D3DDG8 (Calcium-binding EF-hand family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00140 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.5e-47
Identity = 96/138 (69.57%), Postives = 116/138 (84.06%), Query Frame = 0


Query: 1   MSVEILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFG 60
           MSVEILDSATI+NFVEDEEAF  WIRERF HLD DRDGVL Y EML+EL SLRV+ETHFG
Sbjct: 1   MSVEILDSATIVNFVEDEEAFSGWIRERFSHLDMDRDGVLCYGEMLKELQSLRVFETHFG 60

Query: 61  VDAKPDPDELSRLYGAVFTQFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEE 120
           +D KPDP+ELS +Y ++F QFDR+ NG+VDL EFMA TK++M+A+A G+G  P+QM LEE
Sbjct: 61  IDTKPDPNELSSVYASLFLQFDRDCNGKVDLGEFMAETKKMMLAMANGIGLSPVQMLLEE 120

Query: 121 DGFLMKAVDPRKAAKVAA 139
           + FL KAVD R++ K+AA
Sbjct: 121 NSFLKKAVD-RESTKLAA 137

[Close]

BLAST of MS022330 vs. ExPASy TrEMBL
Match: V4U9W3 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10018069mg PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.5e-47
Identity = 94/138 (68.12%), Postives = 114/138 (82.61%), Query Frame = 0


Query: 1   MSVEILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFG 60
           MSVE+LDSATI++FVEDEEAF   IR RF HLD D DG+LSYAEM+QEL SLRV+ETHFG
Sbjct: 1   MSVEVLDSATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  VDAKPDPDELSRLYGAVFTQFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEE 120
           +D KPDP+EL+ +Y ++F QFD +SNG VDLEEF A TK++M+A+A G+GFLP+QM LEE
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKAETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 DGFLMKAVDPRKAAKVAA 139
           D FLMKAV+    AK AA
Sbjct: 121 DSFLMKAVEKESTAKAAA 138

[Close]

BLAST of MS022330 vs. ExPASy TrEMBL
Match: A0A2H5PLI2 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_147600 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.5e-47
Identity = 94/138 (68.12%), Postives = 114/138 (82.61%), Query Frame = 0


Query: 1   MSVEILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFG 60
           MSVE+LDSATI++FVEDEEAF   IR RF HLD D DG+LSYAEM+QEL SLRV+ETHFG
Sbjct: 1   MSVEVLDSATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  VDAKPDPDELSRLYGAVFTQFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEE 120
           +D KPDP+EL+ +Y ++F QFD +SNG VDLEEF A TK++M+A+A G+GFLP+QM LEE
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKAETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 DGFLMKAVDPRKAAKVAA 139
           D FLMKAV+    AK AA
Sbjct: 121 DSFLMKAVEKESTAKAAA 138

[Close]

BLAST of MS022330 vs. TAIR 10
Match: AT2G44310.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 124.4 bits (311), Expect = 7.1e-29
Identity = 60/131 (45.80%), Postives = 90/131 (68.70%), Query Frame = 0


Query: 1   MSVEILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFG 60
           M V ++D +T+ +FV+DEE F   + ERF  LD ++DGVLS +E+ +   S+R+ E+HFG
Sbjct: 1   MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60

Query: 61  VDAKPDPDELSRLYGAVFTQFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMAL-- 120
           VD     DEL+ LY ++F +FD + +G VDLEEF +  K+I++AIA+G+G  P+ M L  
Sbjct: 61  VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120

Query: 121 EEDGFLMKAVD 130
           ++D FL KA D
Sbjct: 121 DDDNFLKKAAD 131

[Close]

BLAST of MS022330 vs. TAIR 10
Match: AT1G54530.1 (Calcium-binding EF hand family protein )

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-10
Identity = 37/124 (29.84%), Postives = 67/124 (54.03%), Query Frame = 0


Query: 5   ILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFGVDAK 64
           ++ S T+I F+ D ++F +   + F+ LD D++G+LS +E+ Q L+++   E+       
Sbjct: 5   VITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVESEVA---- 64

Query: 65  PDPDELSRLYGAVFTQFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEEDGFL 124
              DE   +Y A+F +F      ++  + F      I+ A+A G+G  P+ M +  DG +
Sbjct: 65  -PGDETDNVYNAIFERFGE----DLVPKNFRDLIAEILTAMARGIGNSPVIMVVHNDGLI 119

Query: 125 MKAV 129
           MKAV
Sbjct: 125 MKAV 119

[Close]

BLAST of MS022330 vs. TAIR 10
Match: AT4G38810.2 (Calcium-binding EF-hand family protein )

HSP 1 Score: 55.8 bits (133), Expect = 3.1e-08
Identity = 32/119 (26.89%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 4   EILDSATIINFVEDEEAFGAWIRERFRHLDADRDGVLSYAEMLQELHSLRVYETHFGVDA 63
           ++LD + I+  VE+E+ F  ++ ++F+ LD D DG LS  E+   +  +       G+ A
Sbjct: 13  QVLDGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTELQPAVADI---GAALGLPA 72

Query: 64  KPDPDELSRLYGAVFTQFDRNSNGEVDLEEFMAGTKRIMVAIAEGMGFLPLQMALEEDG 123
           +    +   +Y  V  +F   S  +V   EF      I++ +A G+   P+ + L  DG
Sbjct: 73  QGTSPDSDHIYSEVLNEFTHGSQEKVSKTEFKEVLSDILLGMAAGLKRDPI-VILRMDG 127

The following BLAST results are available for this feature:

BLAST of MS022330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135904.1	9.9e-65	96.24	uncharacterized protein LOC111007741 [Momordica charantia]	[more]
XP_038887184.1	1.0e-48	74.07	uncharacterized protein LOC120077371 [Benincasa hispida]	[more]
KAE8647336.1	1.1e-47	69.34	hypothetical protein Csa_003380 [Cucumis sativus]	[more]
XP_011657544.1	1.1e-47	69.34	uncharacterized protein LOC105435869 [Cucumis sativus]	[more]
XP_038888297.1	4.2e-47	69.57	uncharacterized protein LOC120078146 [Benincasa hispida]	[more]

BLAST of MS022330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09711	7.8e-04	32.88	Calcium-binding protein NCS-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of MS022330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2T1	4.8e-65	96.24	uncharacterized protein LOC111007741 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A0A0KHT7	5.3e-48	69.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G418660 PE=4 SV=1	[more]
A0A5D3DDG8	3.5e-47	69.57	Calcium-binding EF-hand family protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
V4U9W3	3.5e-47	68.12	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10018069mg PE=4 ...	[more]
A0A2H5PLI2	3.5e-47	68.12	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_147600 PE=4 SV=1	[more]

BLAST of MS022330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44310.1	7.1e-29	45.80	Calcium-binding EF-hand family protein	[more]
AT1G54530.1	2.6e-10	29.84	Calcium-binding EF hand family protein	[more]
AT4G38810.2	3.1e-08	26.89	Calcium-binding EF-hand family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 73..101 e-value: 0.13 score: 21.3 coord: 24..52 e-value: 0.16 score: 21.1
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 25..97 e-value: 3.2E-11 score: 43.5
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 69..104 score: 9.743292
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 20..55 score: 9.799083
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 24..97 e-value: 3.75553E-7 score: 42.5349
None	No IPR available	GENE3D	1.10.238.10		coord: 5..106 e-value: 1.3E-13 score: 53.2
None	No IPR available	PANTHER	PTHR34574:SF10	CALCIUM-BINDING EF-HAND FAMILY PROTEIN-LIKE	coord: 1..130
None	No IPR available	PANTHER	PTHR34574	CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED	coord: 1..130
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 82..94
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 33..45
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 23..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022330.1	MS022330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding