MS022269 (gene) Bitter gourd (TR) v1

Overview


Name	MS022269
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING-H2 finger protein ATL18-like
Location	scaffold47: 2142202 .. 2142351 (+)
RNA-Seq Expression	MS022269
Synteny	MS022269

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTCGGTTTGCCTGGTCGAGTTCGTCGGAGAAGATTCTGTGAGCCAGTTGCATAAATGTGGCCATCGTTTCCATCTTGAATGTATTGAAAATTGGCTCCATAGAGATCACTTCACCTGCCCTCTCTGCAGATCCTTCCTCTTCACTTCA

mRNA sequence

TGCTCGGTTTGCCTGGTCGAGTTCGTCGGAGAAGATTCTGTGAGCCAGTTGCATAAATGTGGCCATCGTTTCCATCTTGAATGTATTGAAAATTGGCTCCATAGAGATCACTTCACCTGCCCTCTCTGCAGATCCTTCCTCTTCACTTCA

Coding sequence (CDS)

TGCTCGGTTTGCCTGGTCGAGTTCGTCGGAGAAGATTCTGTGAGCCAGTTGCATAAATGTGGCCATCGTTTCCATCTTGAATGTATTGAAAATTGGCTCCATAGAGATCACTTCACCTGCCCTCTCTGCAGATCCTTCCTCTTCACTTCA

Protein sequence

CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFTS

Homology

[Close]

BLAST of MS022269 vs. NCBI nr
Match: XP_022762435.1 (RING-H2 finger protein ATL18-like [Durio zibethinus])

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-15
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFTS 51
           CS+CLVEF  ED VSQLHKCGH FH+ CIE WL RD FTCPLCRSFLF +
Sbjct: 84  CSICLVEFEKEDVVSQLHKCGHLFHMNCIEKWLDRDQFTCPLCRSFLFAN 133

[Close]

BLAST of MS022269 vs. NCBI nr
Match: TKY50666.1 (RING-H2 finger protein ATL18 [Spatholobus suberectus])

HSP 1 Score: 88.2 bits (217), Expect = 2.2e-14
Identity = 34/49 (69.39%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFT 50
           CS+CLVE+ GED+VS+L +CGH FHL CIE W+HR+ F+CPLCRSFLF+
Sbjct: 88  CSICLVEYEGEDAVSELGRCGHVFHLNCIEQWIHRNQFSCPLCRSFLFS 136

[Close]

BLAST of MS022269 vs. NCBI nr
Match: PRQ25264.1 (putative chromatin regulator PHD family [Rosa chinensis])

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLF 49
           CSVCLVEF  ED VSQL KCGH FH++CIE W+ R+HFTCPLCRS  F
Sbjct: 87  CSVCLVEFEDEDVVSQLSKCGHVFHMDCIEKWMERNHFTCPLCRSLFF 134

[Close]

BLAST of MS022269 vs. NCBI nr
Match: XP_021297590.1 (RING-H2 finger protein ATL18 [Herrania umbratica])

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLF 49
           CS+CLVEF  ED VSQLHKC H FH+ CIE WL  D FTCPLCRSFLF
Sbjct: 84  CSICLVEFEKEDVVSQLHKCRHVFHMNCIEKWLDHDQFTCPLCRSFLF 131

[Close]

BLAST of MS022269 vs. NCBI nr
Match: XP_039035324.1 (RING-H2 finger protein ATL18-like [Hibiscus syriacus])

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLF 49
           CS+CL E   ED VSQ+ KCGH FH+ CIE W+ RDHFTCPLCRSFLF
Sbjct: 85  CSICLAELGKEDVVSQIQKCGHVFHMNCIEKWMERDHFTCPLCRSFLF 132

[Close]

BLAST of MS022269 vs. ExPASy Swiss-Prot
Match: Q9SZL4 (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.3e-13
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFL 48
           C +CLVEF  ED+V+ L +C H FH+ CIE WL R H TCPLCRSF+
Sbjct: 62  CPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRSFV 108

[Close]

BLAST of MS022269 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 3.4e-10
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFTS 51
           CSVCL EF   +S+  L KC H FH+ CI+ WL + H  CPLCR+F+ TS
Sbjct: 159 CSVCLSEFQENESLRLLPKCNHAFHVPCIDTWL-KSHSNCPLCRAFIVTS 207

[Close]

BLAST of MS022269 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 7.6e-10
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFT 50
           C+VCL EF  ED +  L KC H FH++CI+ WL   H TCPLCRS L +
Sbjct: 134 CAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL-LSHSTCPLCRSSLLS 181

[Close]

BLAST of MS022269 vs. ExPASy Swiss-Prot
Match: Q9ZV53 (Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.9e-10
Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFT 50
           C VCL EF  ED +  L KC H FH+ECI+ WL   H TCPLCRS L +
Sbjct: 126 CPVCLCEFETEDKLRLLPKCSHAFHVECIDTWL-LSHSTCPLCRSNLLS 173

[Close]

BLAST of MS022269 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-09
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFL 48
           CSVCL EF   +S+  L KC H FHL CI+ WL + H  CPLCR+F+
Sbjct: 142 CSVCLSEFEENESLRLLPKCNHAFHLPCIDTWL-KSHSNCPLCRAFV 187

[Close]

BLAST of MS022269 vs. ExPASy TrEMBL
Match: A0A6P6AC29 (RING-H2 finger protein ATL18-like OS=Durio zibethinus OX=66656 GN=LOC111308378 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.3e-16
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFTS 51
           CS+CLVEF  ED VSQLHKCGH FH+ CIE WL RD FTCPLCRSFLF +
Sbjct: 84  CSICLVEFEKEDVVSQLHKCGHLFHMNCIEKWLDRDQFTCPLCRSFLFAN 133

[Close]

BLAST of MS022269 vs. ExPASy TrEMBL
Match: A0A6J1BE52 (RING-H2 finger protein ATL18 OS=Herrania umbratica OX=108875 GN=LOC110426643 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.3e-14
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLF 49
           CS+CLVEF  ED VSQLHKC H FH+ CIE WL  D FTCPLCRSFLF
Sbjct: 84  CSICLVEFEKEDVVSQLHKCRHVFHMNCIEKWLDHDQFTCPLCRSFLF 131

[Close]

BLAST of MS022269 vs. ExPASy TrEMBL
Match: A0A2P6PTM5 (Putative chromatin regulator PHD family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0281681 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.3e-14
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLF 49
           CSVCLVEF  ED VSQL KCGH FH++CIE W+ R+HFTCPLCRS  F
Sbjct: 87  CSVCLVEFEDEDVVSQLSKCGHVFHMDCIEKWMERNHFTCPLCRSLFF 134

[Close]

BLAST of MS022269 vs. ExPASy TrEMBL
Match: A0A0A0K513 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G029960 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.0e-14
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLF 49
           CSVCL EF  E  VSQLH+C H FHLECIE+WL R+ FTCPLCRSF+F
Sbjct: 106 CSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLCRSFIF 153

[Close]

BLAST of MS022269 vs. ExPASy TrEMBL
Match: A0A6J5VPD4 (RING-type domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51295 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFT 50
           CS+CLVEF  ED VSQL KCGH FH++CIE W+ R HFTCP+CRS  F+
Sbjct: 81  CSICLVEFEKEDVVSQLSKCGHVFHMDCIERWIERSHFTCPICRSLFFS 129

[Close]

BLAST of MS022269 vs. TAIR 10
Match: AT4G38140.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 3.1e-14
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFL 48
           C +CLVEF  ED+V+ L +C H FH+ CIE WL R H TCPLCRSF+
Sbjct: 62  CPICLVEFEAEDAVTHLPRCAHLFHINCIEPWLLRGHLTCPLCRSFV 108

[Close]

BLAST of MS022269 vs. TAIR 10
Match: AT1G24580.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-10
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFL 48
           C VCL  F  E+ VS+L  C H FH  C++NW   +H TCPLCRS L
Sbjct: 67  CCVCLCGFKEEEEVSELVSCKHFFHRACLDNWFGNNHTTCPLCRSIL 113

[Close]

BLAST of MS022269 vs. TAIR 10
Match: AT1G67856.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.1 bits (144), Expect = 6.0e-10
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFL 48
           C VCL  F  E+ VS+L  C H FH  C++ W   +H TCPLCRS L
Sbjct: 87  CCVCLCGFKEEEEVSELVSCKHYFHSACLDKWFGNNHTTCPLCRSIL 133

[Close]

BLAST of MS022269 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 )

HSP 1 Score: 60.1 bits (144), Expect = 6.0e-10
Identity = 22/45 (48.89%), Postives = 28/45 (62.22%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRS 46
           C+VCL EF GE  +  L  C H FH  C++ W+  D  TCPLCR+
Sbjct: 94  CAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMDHDQKTCPLCRT 138

[Close]

BLAST of MS022269 vs. TAIR 10
Match: AT4G17245.1 (RING/U-box superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-09
Identity = 22/50 (44.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 1   CSVCLVEFVGEDSVSQLHKCGHRFHLECIENWLHRDHFTCPLCRSFLFTS 51
           C +CL EF   D++  L +C H FH+ CI+ WL   H +CP CR+ +F+S
Sbjct: 102 CIICLSEFQDGDTLRVLERCKHGFHVYCIQKWLSSSHSSCPTCRTNIFSS 151

The following BLAST results are available for this feature:

BLAST of MS022269 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022762435.1	1.5e-15	76.00	RING-H2 finger protein ATL18-like [Durio zibethinus]	[more]
TKY50666.1	2.2e-14	69.39	RING-H2 finger protein ATL18 [Spatholobus suberectus]	[more]
PRQ25264.1	1.1e-13	72.92	putative chromatin regulator PHD family [Rosa chinensis]	[more]
XP_021297590.1	1.1e-13	75.00	RING-H2 finger protein ATL18 [Herrania umbratica]	[more]
XP_039035324.1	1.4e-13	70.83	RING-H2 finger protein ATL18-like [Hibiscus syriacus]	[more]

BLAST of MS022269 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL4	4.3e-13	61.70	RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1	[more]
Q9SRQ8	3.4e-10	54.00	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]
Q940Q4	7.6e-10	55.10	RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2	[more]
Q9ZV53	9.9e-10	57.14	Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 P...	[more]
Q9LF64	2.2e-09	55.32	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]

BLAST of MS022269 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P6AC29	7.3e-16	76.00	RING-H2 finger protein ATL18-like OS=Durio zibethinus OX=66656 GN=LOC111308378 P...	[more]
A0A6J1BE52	5.3e-14	75.00	RING-H2 finger protein ATL18 OS=Herrania umbratica OX=108875 GN=LOC110426643 PE=...	[more]
A0A2P6PTM5	5.3e-14	72.92	Putative chromatin regulator PHD family OS=Rosa chinensis OX=74649 GN=RchiOBHm_C...	[more]
A0A0A0K513	9.0e-14	72.92	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G029960 P...	[more]
A0A6J5VPD4	1.5e-13	67.35	RING-type domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS...	[more]

BLAST of MS022269 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38140.1	3.1e-14	61.70	RING/U-box superfamily protein	[more]
AT1G24580.1	1.6e-10	53.19	RING/U-box superfamily protein	[more]
AT1G67856.1	6.0e-10	51.06	RING/U-box superfamily protein	[more]
AT3G61460.1	6.0e-10	48.89	brassinosteroid-responsive RING-H2	[more]
AT4G17245.1	1.3e-09	44.00	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 1..43 e-value: 4.2E-5 score: 32.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 1..44 e-value: 4.4E-12 score: 46.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 1..44 score: 12.666314
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 1..47 e-value: 1.7E-15 score: 58.3
None	No IPR available	PANTHER	PTHR45969:SF9	ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN	coord: 1..48
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 1..48
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022269.1	MS022269.1	mRNA