MS022250 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GCCACCGCCATCACCATGACTTCCGTTCCGCGGCGGAGCTTTCTCCCGACGCGGCCTCTCAACGACGCGCTCCCCGTCTCGCATCCAGATTCCGATCAAACGCTACGCAGAAGGCTCTCTTCGATTTCCTTCAAGATCCAGCCGATTTCTTCGCCTGTCACTTCCTGGCCGTTTCGTAGATCCAAATCGGTGTCCTCCATGCGCGAATACTCCGGCAGTTCGCTGAGGAAGTGGTGGGATTGGGGATGGTCCTGGATCCTCTCTCGCAAGGCTCCCTTCGCCAAAGATCTGGAGATTAACGACGATGAAACCAAATCTCTTGGATCTAATTGCAGAGGTAGTTGGCGGCATCTTTTCTATAAGGTTAGGTCTGAGTTCCGGAAGCTTATGCGATCCGATCGCGTCGGTCTTCCTCAAACTTTCAAGTACGATTCCGTCAATTACTCGAAGAATTTCGACGACGGAGTGAAAACC GCCACCGCCATCACCATGACTTCCGTTCCGCGGCGGAGCTTTCTCCCGACGCGGCCTCTCAACGACGCGCTCCCCGTCTCGCATCCAGATTCCGATCAAACGCTACGCAGAAGGCTCTCTTCGATTTCCTTCAAGATCCAGCCGATTTCTTCGCCTGTCACTTCCTGGCCGTTTCGTAGATCCAAATCGGTGTCCTCCATGCGCGAATACTCCGGCAGTTCGCTGAGGAAGTGGTGGGATTGGGGATGGTCCTGGATCCTCTCTCGCAAGGCTCCCTTCGCCAAAGATCTGGAGATTAACGACGATGAAACCAAATCTCTTGGATCTAATTGCAGAGGTAGTTGGCGGCATCTTTTCTATAAGGTTAGGTCTGAGTTCCGGAAGCTTATGCGATCCGATCGCGTCGGTCTTCCTCAAACTTTCAAGTACGATTCCGTCAATTACTCGAAGAATTTCGACGACGGAGTGAAAACC GCCACCGCCATCACCATGACTTCCGTTCCGCGGCGGAGCTTTCTCCCGACGCGGCCTCTCAACGACGCGCTCCCCGTCTCGCATCCAGATTCCGATCAAACGCTACGCAGAAGGCTCTCTTCGATTTCCTTCAAGATCCAGCCGATTTCTTCGCCTGTCACTTCCTGGCCGTTTCGTAGATCCAAATCGGTGTCCTCCATGCGCGAATACTCCGGCAGTTCGCTGAGGAAGTGGTGGGATTGGGGATGGTCCTGGATCCTCTCTCGCAAGGCTCCCTTCGCCAAAGATCTGGAGATTAACGACGATGAAACCAAATCTCTTGGATCTAATTGCAGAGGTAGTTGGCGGCATCTTTTCTATAAGGTTAGGTCTGAGTTCCGGAAGCTTATGCGATCCGATCGCGTCGGTCTTCCTCAAACTTTCAAGTACGATTCCGTCAATTACTCGAAGAATTTCGACGACGGAGTGAAAACC ATAITMTSVPRRSFLPTRPLNDALPVSHPDSDQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMREYSGSSLRKWWDWGWSWILSRKAPFAKDLEINDDETKSLGSNCRGSWRHLFYKVRSEFRKLMRSDRVGLPQTFKYDSVNYSKNFDDGVKT Homology
BLAST of MS022250 vs. NCBI nr
Match: XP_022135907.1 (uncharacterized protein LOC111007745 [Momordica charantia]) HSP 1 Score: 317.8 bits (813), Expect = 5.4e-83 Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0
BLAST of MS022250 vs. NCBI nr
Match: XP_038888269.1 (uncharacterized protein LOC120078122 [Benincasa hispida]) HSP 1 Score: 287.3 bits (734), Expect = 7.8e-74 Identity = 134/153 (87.58%), Postives = 147/153 (96.08%), Query Frame = 0
BLAST of MS022250 vs. NCBI nr
Match: KAG7022775.1 (hypothetical protein SDJN02_16511, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 285.0 bits (728), Expect = 3.9e-73 Identity = 135/153 (88.24%), Postives = 146/153 (95.42%), Query Frame = 0
BLAST of MS022250 vs. NCBI nr
Match: XP_022928235.1 (uncharacterized protein LOC111435129 [Cucurbita moschata]) HSP 1 Score: 284.6 bits (727), Expect = 5.0e-73 Identity = 134/153 (87.58%), Postives = 146/153 (95.42%), Query Frame = 0
BLAST of MS022250 vs. NCBI nr
Match: KAA0059605.1 (hypothetical protein E6C27_scaffold54G00270 [Cucumis melo var. makuwa] >TYK08138.1 hypothetical protein E5676_scaffold886G00160 [Cucumis melo var. makuwa]) HSP 1 Score: 248.8 bits (634), Expect = 3.1e-62 Identity = 128/163 (78.53%), Postives = 143/163 (87.73%), Query Frame = 0
BLAST of MS022250 vs. ExPASy TrEMBL
Match: A0A6J1C433 (uncharacterized protein LOC111007745 OS=Momordica charantia OX=3673 GN=LOC111007745 PE=4 SV=1) HSP 1 Score: 317.8 bits (813), Expect = 2.6e-83 Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0
BLAST of MS022250 vs. ExPASy TrEMBL
Match: A0A6J1ER56 (uncharacterized protein LOC111435129 OS=Cucurbita moschata OX=3662 GN=LOC111435129 PE=4 SV=1) HSP 1 Score: 284.6 bits (727), Expect = 2.4e-73 Identity = 134/153 (87.58%), Postives = 146/153 (95.42%), Query Frame = 0
BLAST of MS022250 vs. ExPASy TrEMBL
Match: A0A5A7V189 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00160 PE=4 SV=1) HSP 1 Score: 248.8 bits (634), Expect = 1.5e-62 Identity = 128/163 (78.53%), Postives = 143/163 (87.73%), Query Frame = 0
BLAST of MS022250 vs. ExPASy TrEMBL
Match: A0A0A0K1L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027010 PE=4 SV=1) HSP 1 Score: 239.6 bits (610), Expect = 9.0e-60 Identity = 123/163 (75.46%), Postives = 140/163 (85.89%), Query Frame = 0
BLAST of MS022250 vs. ExPASy TrEMBL
Match: A0A2I4FBL9 (uncharacterized protein LOC108997284 OS=Juglans regia OX=51240 GN=LOC108997284 PE=4 SV=1) HSP 1 Score: 226.9 bits (577), Expect = 6.0e-56 Identity = 106/146 (72.60%), Postives = 124/146 (84.93%), Query Frame = 0
BLAST of MS022250 vs. TAIR 10
Match: AT4G35320.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 115.2 bits (287), Expect = 4.9e-26 Identity = 58/115 (50.43%), Postives = 78/115 (67.83%), Query Frame = 0
BLAST of MS022250 vs. TAIR 10
Match: AT2G17300.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35320.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 109.4 bits (272), Expect = 2.7e-24 Identity = 60/125 (48.00%), Postives = 82/125 (65.60%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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