MS022231 (gene) Bitter gourd (TR) v1

Overview


Name	MS022231
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	F-box domain-containing protein
Location	scaffold47: 1875169 .. 1875642 (-)
RNA-Seq Expression	MS022231
Synteny	MS022231

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCAAAAAAATGAGGATGAAAATATACCATATGATCCATGGAATAGTGTGCCAAAAGATATCATGGAGGGAATTGCTTTGCATTTTAGTTCAACTGATTATATTCATAGCTCTATGGTTTGCAAATCATGGCAAGCACTTCTTCTGCAATCTGATATTGTTAGGCCAAAAGTGCTTTGGCTTTTGCTTCCACATCGCTCAACTAGAGACACCATGCAATTCTACAATGTTTTGGAGGAAAAATTTCACACCATTGTGTTGCCAAAGGTCATTGATGGGAGTAGGGTTTTTGTTGGGGGGTGTTCCAAAGGTTGGGTTATTTTCATGGATAAAGTTACGTTCGAGATCTCTCTTTTTAATCCCATCACTCGGGTCGAGTACTTCCTTCCATCGTCACCAATCATGTCGCCTTTACAGCGCGTTGAATTATCTTCATCGAATATTTCAGAGTGTACTGTGGCTGCATTCTTTGAC

mRNA sequence

TTTCAAAAAAATGAGGATGAAAATATACCATATGATCCATGGAATAGTGTGCCAAAAGATATCATGGAGGGAATTGCTTTGCATTTTAGTTCAACTGATTATATTCATAGCTCTATGGTTTGCAAATCATGGCAAGCACTTCTTCTGCAATCTGATATTGTTAGGCCAAAAGTGCTTTGGCTTTTGCTTCCACATCGCTCAACTAGAGACACCATGCAATTCTACAATGTTTTGGAGGAAAAATTTCACACCATTGTGTTGCCAAAGGTCATTGATGGGAGTAGGGTTTTTGTTGGGGGGTGTTCCAAAGGTTGGGTTATTTTCATGGATAAAGTTACGTTCGAGATCTCTCTTTTTAATCCCATCACTCGGGTCGAGTACTTCCTTCCATCGTCACCAATCATGTCGCCTTTACAGCGCGTTGAATTATCTTCATCGAATATTTCAGAGTGTACTGTGGCTGCATTCTTTGAC

Coding sequence (CDS)

TTTCAAAAAAATGAGGATGAAAATATACCATATGATCCATGGAATAGTGTGCCAAAAGATATCATGGAGGGAATTGCTTTGCATTTTAGTTCAACTGATTATATTCATAGCTCTATGGTTTGCAAATCATGGCAAGCACTTCTTCTGCAATCTGATATTGTTAGGCCAAAAGTGCTTTGGCTTTTGCTTCCACATCGCTCAACTAGAGACACCATGCAATTCTACAATGTTTTGGAGGAAAAATTTCACACCATTGTGTTGCCAAAGGTCATTGATGGGAGTAGGGTTTTTGTTGGGGGGTGTTCCAAAGGTTGGGTTATTTTCATGGATAAAGTTACGTTCGAGATCTCTCTTTTTAATCCCATCACTCGGGTCGAGTACTTCCTTCCATCGTCACCAATCATGTCGCCTTTACAGCGCGTTGAATTATCTTCATCGAATATTTCAGAGTGTACTGTGGCTGCATTCTTTGAC

Protein sequence

FQKNEDENIPYDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVRPKVLWLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMDKVTFEISLFNPITRVEYFLPSSPIMSPLQRVELSSSNISECTVAAFFD

Homology

[Close]

BLAST of MS022231 vs. NCBI nr
Match: XP_022155350.1 (uncharacterized protein LOC111022492 [Momordica charantia])

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-35
Identity = 86/145 (59.31%), Postives = 103/145 (71.03%), Query Frame = 0


Query: 11  YDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVRPKVLWLLLPHRSTRD 70
           Y PW ++P D+ME IAL  +STDYI +SMVCKSWQ+LLLQSDI+RP+  WLLLPH S++ 
Sbjct: 25  YGPWKNLPGDLMEKIALKLNSTDYIRNSMVCKSWQSLLLQSDILRPQFPWLLLPHHSSKH 84

Query: 71  TMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMDKVTFEISLFNPITRVEYFLP 130
           T++ Y+V E KFHT      +DG    V GCSKGWVIF   V  +ISLFNPI+  +  L 
Sbjct: 85  TIKLYSVSENKFHTF----HVDGGNNVV-GCSKGWVIF-KTVGSKISLFNPISGAKCILS 144

Query: 131 SSPIMSPLQRVELSSSNISECTVAA 156
           S P    LQRVELSSS ISECTV A
Sbjct: 145 SLPTALSLQRVELSSSIISECTVVA 163

[Close]

BLAST of MS022231 vs. NCBI nr
Match: VVA31268.1 (PREDICTED: F-box/kelch-repeat [Prunus dulcis])

HSP 1 Score: 95.5 bits (236), Expect = 4.3e-16
Identity = 50/121 (41.32%), Postives = 76/121 (62.81%), Query Frame = 0


Query: 14  WNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVR-PKVLWLLLPHRSTRDTM 73
           W +VP DIME I  H +  + I   ++CKSW +L ++ D    P++ WLLLP  S +  +
Sbjct: 3   WQTVPDDIMEIILKHLNLRERIRLRIICKSWNSLAMRRDFSNAPQLPWLLLPQASNK-YL 62

Query: 74  QFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMDK--VTFEISLFNPITRVEYFLP 132
            F +V + KFHT++LPK + G RV   GCSKGW++ + +  +  ++ L NPI+R +Y LP
Sbjct: 63  SFSSVSDIKFHTLMLPKPVRGGRVC--GCSKGWLVMIKEKVLNSKLYLVNPISRDQYQLP 120

[Close]

BLAST of MS022231 vs. NCBI nr
Match: KAE8008804.1 (hypothetical protein FH972_005279 [Carpinus fangiana])

HSP 1 Score: 94.7 bits (234), Expect = 7.4e-16
Identity = 60/167 (35.93%), Postives = 88/167 (52.69%), Query Frame = 0


Query: 11  YDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDI-VRPKVLWLLLPHRSTR 70
           Y  W+ VP D+M  I    +  D I    VCKSW++++ Q DI   P V WLLLPH    
Sbjct: 57  YGRWDEVPYDMMGEILGRLNIIDRIRLGGVCKSWRSIVKQKDIHSAPSVPWLLLPHAQNC 116

Query: 71  DTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFM--DKVTFEISLFNPITRVEY 130
           +++ F+++ E   H+I LPK   G   F  G SKGW+      +   ++ L NPI+ V+ 
Sbjct: 117 NSLSFFSMSEGIVHSIKLPKAAQGGWCF--GSSKGWLTIARGTQDDPQVFLLNPISGVQR 176

Query: 131 FLPS-----------------SPIMSPLQRVELSSSNISECTVAAFF 158
            LPS                 + I S ++++ELSS++IS+C VAA F
Sbjct: 177 HLPSLTTIPSFKDFVDVAWDPNRITSFIRKIELSSTDISKCIVAAIF 221

[Close]

BLAST of MS022231 vs. NCBI nr
Match: XP_021818908.1 (uncharacterized protein LOC110760869 [Prunus avium])

HSP 1 Score: 92.4 bits (228), Expect = 3.7e-15
Identity = 48/121 (39.67%), Postives = 76/121 (62.81%), Query Frame = 0


Query: 14  WNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVR-PKVLWLLLPHRSTRDTM 73
           W ++P DIME I  H +  + I  +++CKSW +L ++ D    P++ WLLLP  S +  +
Sbjct: 42  WQTLPDDIMEIILKHLNLRERIRLTIICKSWNSLAMRRDFSNAPQLPWLLLPQASNK-YL 101

Query: 74  QFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMDK--VTFEISLFNPITRVEYFLP 132
            F +V + KFHT+ LPK + G RV   GCSKGW++ + +  +  ++ L NPI+R ++ LP
Sbjct: 102 SFSSVSDGKFHTLRLPKPVRGGRVC--GCSKGWLVMIKEKVLNSKLYLINPISRDQHQLP 159

[Close]

BLAST of MS022231 vs. NCBI nr
Match: KAE8008846.1 (hypothetical protein FH972_005319 [Carpinus fangiana])

HSP 1 Score: 92.0 bits (227), Expect = 4.8e-15
Identity = 58/167 (34.73%), Postives = 88/167 (52.69%), Query Frame = 0


Query: 11  YDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDI-VRPKVLWLLLPHRSTR 70
           Y  W+ VP D+M  I    +  D I    VCKSW++++ Q DI   P V WLLLPH    
Sbjct: 49  YGRWDEVPDDMMGEILGRLNIIDRIRLGGVCKSWRSIVKQKDIHSAPSVPWLLLPHAQNC 108

Query: 71  DTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFM--DKVTFEISLFNPITRVEY 130
           +++ F+++ E   HTI LP+   G   F  G SKGW+      +   ++ L +PI+ V+ 
Sbjct: 109 NSLSFFSMSEGIVHTIKLPEAAQGGWCF--GSSKGWLTIARGTQDDPQVFLLSPISGVQR 168

Query: 131 FLPS-----------------SPIMSPLQRVELSSSNISECTVAAFF 158
            LPS                 + I S ++++ELSS+++S+C VAA F
Sbjct: 169 HLPSLTAIPYFKDFVDLAWDPNRITSFIRKIELSSTDLSKCVVAATF 213

[Close]

BLAST of MS022231 vs. ExPASy TrEMBL
Match: A0A6J1DM79 (uncharacterized protein LOC111022492 OS=Momordica charantia OX=3673 GN=LOC111022492 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 5.3e-36
Identity = 86/145 (59.31%), Postives = 103/145 (71.03%), Query Frame = 0


Query: 11  YDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVRPKVLWLLLPHRSTRD 70
           Y PW ++P D+ME IAL  +STDYI +SMVCKSWQ+LLLQSDI+RP+  WLLLPH S++ 
Sbjct: 25  YGPWKNLPGDLMEKIALKLNSTDYIRNSMVCKSWQSLLLQSDILRPQFPWLLLPHHSSKH 84

Query: 71  TMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMDKVTFEISLFNPITRVEYFLP 130
           T++ Y+V E KFHT      +DG    V GCSKGWVIF   V  +ISLFNPI+  +  L 
Sbjct: 85  TIKLYSVSENKFHTF----HVDGGNNVV-GCSKGWVIF-KTVGSKISLFNPISGAKCILS 144

Query: 131 SSPIMSPLQRVELSSSNISECTVAA 156
           S P    LQRVELSSS ISECTV A
Sbjct: 145 SLPTALSLQRVELSSSIISECTVVA 163

[Close]

BLAST of MS022231 vs. ExPASy TrEMBL
Match: A0A5E4FUV8 (PREDICTED: F-box/kelch-repeat OS=Prunus dulcis OX=3755 GN=ALMOND_2B015541 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.1e-16
Identity = 50/121 (41.32%), Postives = 76/121 (62.81%), Query Frame = 0


Query: 14  WNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVR-PKVLWLLLPHRSTRDTM 73
           W +VP DIME I  H +  + I   ++CKSW +L ++ D    P++ WLLLP  S +  +
Sbjct: 3   WQTVPDDIMEIILKHLNLRERIRLRIICKSWNSLAMRRDFSNAPQLPWLLLPQASNK-YL 62

Query: 74  QFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMDK--VTFEISLFNPITRVEYFLP 132
            F +V + KFHT++LPK + G RV   GCSKGW++ + +  +  ++ L NPI+R +Y LP
Sbjct: 63  SFSSVSDIKFHTLMLPKPVRGGRVC--GCSKGWLVMIKEKVLNSKLYLVNPISRDQYQLP 120

[Close]

BLAST of MS022231 vs. ExPASy TrEMBL
Match: A0A5N6QP56 (F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_005279 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.6e-16
Identity = 60/167 (35.93%), Postives = 88/167 (52.69%), Query Frame = 0


Query: 11  YDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDI-VRPKVLWLLLPHRSTR 70
           Y  W+ VP D+M  I    +  D I    VCKSW++++ Q DI   P V WLLLPH    
Sbjct: 57  YGRWDEVPYDMMGEILGRLNIIDRIRLGGVCKSWRSIVKQKDIHSAPSVPWLLLPHAQNC 116

Query: 71  DTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFM--DKVTFEISLFNPITRVEY 130
           +++ F+++ E   H+I LPK   G   F  G SKGW+      +   ++ L NPI+ V+ 
Sbjct: 117 NSLSFFSMSEGIVHSIKLPKAAQGGWCF--GSSKGWLTIARGTQDDPQVFLLNPISGVQR 176

Query: 131 FLPS-----------------SPIMSPLQRVELSSSNISECTVAAFF 158
            LPS                 + I S ++++ELSS++IS+C VAA F
Sbjct: 177 HLPSLTTIPSFKDFVDVAWDPNRITSFIRKIELSSTDISKCIVAAIF 221

[Close]

BLAST of MS022231 vs. ExPASy TrEMBL
Match: A0A6P5SZ44 (uncharacterized protein LOC110760869 OS=Prunus avium OX=42229 GN=LOC110760869 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15
Identity = 48/121 (39.67%), Postives = 76/121 (62.81%), Query Frame = 0


Query: 14  WNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDIVR-PKVLWLLLPHRSTRDTM 73
           W ++P DIME I  H +  + I  +++CKSW +L ++ D    P++ WLLLP  S +  +
Sbjct: 42  WQTLPDDIMEIILKHLNLRERIRLTIICKSWNSLAMRRDFSNAPQLPWLLLPQASNK-YL 101

Query: 74  QFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMDK--VTFEISLFNPITRVEYFLP 132
            F +V + KFHT+ LPK + G RV   GCSKGW++ + +  +  ++ L NPI+R ++ LP
Sbjct: 102 SFSSVSDGKFHTLRLPKPVRGGRVC--GCSKGWLVMIKEKVLNSKLYLINPISRDQHQLP 159

[Close]

BLAST of MS022231 vs. ExPASy TrEMBL
Match: A0A5N6R432 (F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_012527 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.3e-15
Identity = 47/134 (35.07%), Postives = 75/134 (55.97%), Query Frame = 0


Query: 1   FQKNEDENIPYDPWNSVPKDIMEGIALHFSSTDYIHSSMVCKSWQALLLQSDI-VRPKVL 60
           F    ++   +  W+ +P  IME I    +  D +HSS VCKSW++L++Q  +   P++ 
Sbjct: 27  FSNTTEKQHYFGRWDELPDGIMENIFGRLNMIDLVHSSGVCKSWRSLVMQKQVRAAPQLP 86

Query: 61  WLLLPHRSTRDTMQFYNVLEEKFHTIVLPKVIDGSRVFVGGCSKGWVIFMDKVTF--EIS 120
           WL+LPHR + +++ FY++ E   + I LPK   G   F  GCSK W++      +  E+ 
Sbjct: 87  WLVLPHRQSCNSLSFYSMAEATVYNIKLPKPAQGGWCF--GCSKSWLMMARGTEWEPEVY 146

Query: 121 LFNPITRVEYFLPS 132
           LFNP +  +  LPS
Sbjct: 147 LFNPFSGFKLNLPS 158

The following BLAST results are available for this feature:

BLAST of MS022231 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155350.1	1.1e-35	59.31	uncharacterized protein LOC111022492 [Momordica charantia]	[more]
VVA31268.1	4.3e-16	41.32	PREDICTED: F-box/kelch-repeat [Prunus dulcis]	[more]
KAE8008804.1	7.4e-16	35.93	hypothetical protein FH972_005279 [Carpinus fangiana]	[more]
XP_021818908.1	3.7e-15	39.67	uncharacterized protein LOC110760869 [Prunus avium]	[more]
KAE8008846.1	4.8e-15	34.73	hypothetical protein FH972_005319 [Carpinus fangiana]	[more]

BLAST of MS022231 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS022231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DM79	5.3e-36	59.31	uncharacterized protein LOC111022492 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5E4FUV8	2.1e-16	41.32	PREDICTED: F-box/kelch-repeat OS=Prunus dulcis OX=3755 GN=ALMOND_2B015541 PE=4 S...	[more]
A0A5N6QP56	3.6e-16	35.93	F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_005279 P...	[more]
A0A6P5SZ44	1.8e-15	39.67	uncharacterized protein LOC110760869 OS=Prunus avium OX=42229 GN=LOC110760869 PE...	[more]
A0A5N6R432	2.3e-15	35.07	F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_012527 P...	[more]

BLAST of MS022231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR44259	OS07G0183000 PROTEIN-RELATED	coord: 13..144
None	No IPR available	PANTHER	PTHR44259:SF65	BNAC03G14360D PROTEIN	coord: 13..144
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 7..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022231.1	MS022231.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding