MS022227 (gene) Bitter gourd (TR) v1

Overview


Name	MS022227
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein DETOXIFICATION
Location	scaffold47: 1850392 .. 1850532 (+)
RNA-Seq Expression	MS022227
Synteny	MS022227

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCATCTATCTTCTAACTACGATGACGGTCGAGACGTCGATGGTTGCTCATCAAAGTGTCGTGGCTATGGTTGCACACCAAATATGTATGCAAGTATGGTTAGCAGTATCTATTCTTATTGATGCTCTTGCTACTTCTAGT

mRNA sequence

TCCATCTATCTTCTAACTACGATGACGGTCGAGACGTCGATGGTTGCTCATCAAAGTGTCGTGGCTATGGTTGCACACCAAATATGTATGCAAGTATGGTTAGCAGTATCTATTCTTATTGATGCTCTTGCTACTTCTAGT

Coding sequence (CDS)

TCCATCTATCTTCTAACTACGATGACGGTCGAGACGTCGATGGTTGCTCATCAAAGTGTCGTGGCTATGGTTGCACACCAAATATGTATGCAAGTATGGTTAGCAGTATCTATTCTTATTGATGCTCTTGCTACTTCTAGT

Protein sequence

SIYLLTTMTVETSMVAHQSVVAMVAHQICMQVWLAVSILIDALATSS

Homology

[Close]

BLAST of MS022227 vs. NCBI nr
Match: XP_011046285.1 (PREDICTED: MATE efflux family protein 3, chloroplastic-like [Populus euphratica] >XP_011046286.1 PREDICTED: MATE efflux family protein 3, chloroplastic-like [Populus euphratica] >XP_011046287.1 PREDICTED: MATE efflux family protein 3, chloroplastic-like [Populus euphratica] >XP_011046288.1 PREDICTED: MATE efflux family protein 3, chloroplastic-like [Populus euphratica])

HSP 1 Score: 61.6 bits (148), Expect = 2.1e-06
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   SIYLLTTMTVETSMVAHQSVVAMVAHQICMQVWLAVSILIDALATS 47
           ++ +LTTMT+ TSM AHQ  VAM AHQICMQVWLAVS+L DALA+S
Sbjct: 390 TLAVLTTMTLATSMAAHQGAVAMAAHQICMQVWLAVSLLTDALASS 435

[Close]

BLAST of MS022227 vs. NCBI nr
Match: XP_008447864.1 (PREDICTED: protein DETOXIFICATION 45, chloroplastic [Cucumis melo] >XP_008447865.1 PREDICTED: protein DETOXIFICATION 45, chloroplastic [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 7.8e-06
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   SIYLLTTMTVETSMVAHQSVVAMVAHQICMQVWLAVSILIDALATSS 48
           ++ +LTTMT+ TSM A Q  VAM AHQICMQVWLAVS+L DALA SS
Sbjct: 392 TLSVLTTMTLGTSMAARQGAVAMAAHQICMQVWLAVSLLTDALAASS 438

[Close]

BLAST of MS022227 vs. NCBI nr
Match: TYK23294.1 (protein DETOXIFICATION 45 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 7.8e-06
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   SIYLLTTMTVETSMVAHQSVVAMVAHQICMQVWLAVSILIDALATSS 48
           ++ +LTTMT+ TSM A Q  VAM AHQICMQVWLAVS+L DALA SS
Sbjct: 392 TLSVLTTMTLGTSMAARQGAVAMAAHQICMQVWLAVSLLTDALAASS 438

[Close]

BLAST of MS022227 vs. NCBI nr
Match: XP_038886867.1 (protein DETOXIFICATION 45, chloroplastic [Benincasa hispida])

HSP 1 Score: 59.7 bits (143), Expect = 7.8e-06
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   SIYLLTTMTVETSMVAHQSVVAMVAHQICMQVWLAVSILIDALATSS 48
           ++ +LTTMT+ TSM A Q  VAM AHQICMQVWLAVS+L DALA SS
Sbjct: 392 TLSVLTTMTLGTSMAARQGAVAMAAHQICMQVWLAVSLLTDALAASS 438

[Close]

BLAST of MS022227 vs. NCBI nr
Match: XP_022136013.1 (protein DETOXIFICATION 45, chloroplastic isoform X1 [Momordica charantia] >XP_022136014.1 protein DETOXIFICATION 45, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 7.8e-06
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   SIYLLTTMTVETSMVAHQSVVAMVAHQICMQVWLAVSILIDALATSS 48
           ++ +LTTMT+ TSM A Q  VAM AHQICMQVWLAVS+L DALA SS
Sbjct: 398 TLSVLTTMTLGTSMAARQGAVAMAAHQICMQVWLAVSLLTDALAASS 444

[Close]

BLAST of MS022227 vs. ExPASy Swiss-Prot
Match: Q9SVE7 (Protein DETOXIFICATION 45, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DTX45 PE=2 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 5.1e-08
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 1   SIYLLTTMTVETSMVAHQSVVAMVAHQICMQVWLAVSILIDALATS 47
           ++ +L TMTV TSM A Q V AM AHQICMQVWLAVS+L DALA+S
Sbjct: 358 TLSVLVTMTVATSMAARQGVFAMAAHQICMQVWLAVSLLTDALASS 403

[Close]

BLAST of MS022227 vs. ExPASy TrEMBL
Match: A0A1S3BIE1 (Protein DETOXIFICATION OS=Cucumis melo OX=3656 GN=LOC103490219 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-06
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   SIYLLTTMTVETSMVAHQSVVAMVAHQICMQVWLAVSILIDALATSS 48
           ++ +LTTMT+ TSM A Q  VAM AHQICMQVWLAVS+L DALA SS
Sbjct: 392 TLSVLTTMTLGTSMAARQGAVAMAAHQICMQVWLAVSLLTDALAASS 438

[Close]

BLAST of MS022227 vs. ExPASy TrEMBL
Match: A0A6J1C6G1 (Protein DETOXIFICATION OS=Momordica charantia OX=3673 GN=LOC111007817 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-06
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   SIYLLTTMTVETSMVAHQSVVAMVAHQICMQVWLAVSILIDALATSS 48
           ++ +LTTMT+ TSM A Q  VAM AHQICMQVWLAVS+L DALA SS
Sbjct: 398 TLSVLTTMTLGTSMAARQGAVAMAAHQICMQVWLAVSLLTDALAASS 444

[Close]

BLAST of MS022227 vs. ExPASy TrEMBL
Match: A0A5D3DI35 (Protein DETOXIFICATION OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003520 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-06
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   SIYLLTTMTVETSMVAHQSVVAMVAHQICMQVWLAVSILIDALATSS 48
           ++ +LTTMT+ TSM A Q  VAM AHQICMQVWLAVS+L DALA SS
Sbjct: 392 TLSVLTTMTLGTSMAARQGAVAMAAHQICMQVWLAVSLLTDALAASS 438

[Close]

BLAST of MS022227 vs. ExPASy TrEMBL
Match: A0A0A0K1I8 (Protein DETOXIFICATION OS=Cucumis sativus OX=3659 GN=Csa_7G024020 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-06
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   SIYLLTTMTVETSMVAHQSVVAMVAHQICMQVWLAVSILIDALATSS 48
           ++ +LTTMT+ TSM A Q  VAM AHQICMQVWLAVS+L DALA SS
Sbjct: 392 TLSVLTTMTLGTSMAARQGAVAMAAHQICMQVWLAVSLLTDALAASS 438

[Close]

BLAST of MS022227 vs. ExPASy TrEMBL
Match: A0A6J1C2B9 (Protein DETOXIFICATION OS=Momordica charantia OX=3673 GN=LOC111007817 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-06
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   SIYLLTTMTVETSMVAHQSVVAMVAHQICMQVWLAVSILIDALATSS 48
           ++ +LTTMT+ TSM A Q  VAM AHQICMQVWLAVS+L DALA SS
Sbjct: 398 TLSVLTTMTLGTSMAARQGAVAMAAHQICMQVWLAVSLLTDALAASS 444

[Close]

BLAST of MS022227 vs. TAIR 10
Match: AT4G38380.1 (MATE efflux family protein )

HSP 1 Score: 57.4 bits (137), Expect = 3.6e-09
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0


Query: 1   SIYLLTTMTVETSMVAHQSVVAMVAHQICMQVWLAVSILIDALATS 47
           ++ +L TMTV TSM A Q V AM AHQICMQVWLAVS+L DALA+S
Sbjct: 358 TLSVLVTMTVATSMAARQGVFAMAAHQICMQVWLAVSLLTDALASS 403

The following BLAST results are available for this feature:

BLAST of MS022227 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011046285.1	2.1e-06	71.74	PREDICTED: MATE efflux family protein 3, chloroplastic-like [Populus euphratica]...	[more]
XP_008447864.1	7.8e-06	70.21	PREDICTED: protein DETOXIFICATION 45, chloroplastic [Cucumis melo] >XP_008447865...	[more]
TYK23294.1	7.8e-06	70.21	protein DETOXIFICATION 45 [Cucumis melo var. makuwa]	[more]
XP_038886867.1	7.8e-06	70.21	protein DETOXIFICATION 45, chloroplastic [Benincasa hispida]	[more]
XP_022136013.1	7.8e-06	70.21	protein DETOXIFICATION 45, chloroplastic isoform X1 [Momordica charantia] >XP_02...	[more]

BLAST of MS022227 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SVE7	5.1e-08	69.57	Protein DETOXIFICATION 45, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DTX4...	[more]

BLAST of MS022227 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BIE1	3.8e-06	70.21	Protein DETOXIFICATION OS=Cucumis melo OX=3656 GN=LOC103490219 PE=3 SV=1	[more]
A0A6J1C6G1	3.8e-06	70.21	Protein DETOXIFICATION OS=Momordica charantia OX=3673 GN=LOC111007817 PE=3 SV=1	[more]
A0A5D3DI35	3.8e-06	70.21	Protein DETOXIFICATION OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A0A0K1I8	3.8e-06	70.21	Protein DETOXIFICATION OS=Cucumis sativus OX=3659 GN=Csa_7G024020 PE=3 SV=1	[more]
A0A6J1C2B9	3.8e-06	70.21	Protein DETOXIFICATION OS=Momordica charantia OX=3673 GN=LOC111007817 PE=3 SV=1	[more]

BLAST of MS022227 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38380.1	3.6e-09	69.57	MATE efflux family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044644	Multi antimicrobial extrusion protein DinF-like	PANTHER	PTHR42893	PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED	coord: 6..47
None	No IPR available	PANTHER	PTHR42893:SF8	PROTEIN DETOXIFICATION	coord: 6..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022227.1	MS022227.1	mRNA