MS022214 (gene) Bitter gourd (TR) v1

Overview
NameMS022214
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold47: 1773032 .. 1773235 (+)
RNA-Seq ExpressionMS022214
SyntenyMS022214
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCACGAGCGGGCATCTTCCCAGATTCGAGTTAGTGGCATCAATTTTGTTGCCCGATCTTGAAAATGCTGAACTGGGTCTCTCTCTGCAGAGGACAAGATTGTCGCTTTACACGTGCAAACGTGTGGGAATCTTCTTCCTCCCAATGCATCAAATTAATTTATCTGTTTTCAAAGATCTCATGGCGATGTTCGTGCTCTGTTTC

mRNA sequence

TGCACGAGCGGGCATCTTCCCAGATTCGAGTTAGTGGCATCAATTTTGTTGCCCGATCTTGAAAATGCTGAACTGGGTCTCTCTCTGCAGAGGACAAGATTGTCGCTTTACACGTGCAAACGTGTGGGAATCTTCTTCCTCCCAATGCATCAAATTAATTTATCTGTTTTCAAAGATCTCATGGCGATGTTCGTGCTCTGTTTC

Coding sequence (CDS)

TGCACGAGCGGGCATCTTCCCAGATTCGAGTTAGTGGCATCAATTTTGTTGCCCGATCTTGAAAATGCTGAACTGGGTCTCTCTCTGCAGAGGACAAGATTGTCGCTTTACACGTGCAAACGTGTGGGAATCTTCTTCCTCCCAATGCATCAAATTAATTTATCTGTTTTCAAAGATCTCATGGCGATGTTCGTGCTCTGTTTC

Protein sequence

CTSGHLPRFELVASILLPDLENAELGLSLQRTRLSLYTCKRVGIFFLPMHQINLSVFKDLMAMFVLCF
Homology
BLAST of MS022214 vs. NCBI nr
Match: TYK23306.1 (hypothetical protein E5676_scaffold142G003640 [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 3  SGHLPRFELVASILLPDLENAELGLSLQRTRLSLYTCKRVGIFFLPMHQIN 54
          S HL R E VASILL DLEN E+GL L+RT LSLYTC RV IFF PM  I+
Sbjct: 4  SKHLCRIEAVASILLADLENGEVGLVLRRTSLSLYTCNRVRIFFFPMQSIS 54

BLAST of MS022214 vs. NCBI nr
Match: XP_031744648.1 (uncharacterized protein LOC105436063 isoform X1 [Cucumis sativus] >XP_031744649.1 uncharacterized protein LOC105436063 isoform X1 [Cucumis sativus] >XP_031744650.1 uncharacterized protein LOC105436063 isoform X1 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 3.5e-07
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 0

Query: 3  SGHLPRFELVASILLPDLENAELGLSLQRTRLSLYTCKRVGIFFLPMHQINLSVFKDLMA 62
          S HL   E VAS+L  DLEN E  L L+RT LSLYTC RV IFF PM  ++  +F+  + 
Sbjct: 3  SKHLCIIEAVASVLFADLENGEPDLLLRRTSLSLYTCNRVRIFFFPMQSLSF-LFQRYLR 62

Query: 63 MFVLCF 69
          M VLCF
Sbjct: 63 MLVLCF 67

BLAST of MS022214 vs. NCBI nr
Match: XP_031744651.1 (uncharacterized protein LOC105436063 isoform X2 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 3.5e-07
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 0

Query: 3  SGHLPRFELVASILLPDLENAELGLSLQRTRLSLYTCKRVGIFFLPMHQINLSVFKDLMA 62
          S HL   E VAS+L  DLEN E  L L+RT LSLYTC RV IFF PM  ++  +F+  + 
Sbjct: 3  SKHLCIIEAVASVLFADLENGEPDLLLRRTSLSLYTCNRVRIFFFPMQSLSF-LFQRYLR 62

Query: 63 MFVLCF 69
          M VLCF
Sbjct: 63 MLVLCF 67

BLAST of MS022214 vs. ExPASy TrEMBL
Match: A0A5D3DI44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003640 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 0

Query: 3  SGHLPRFELVASILLPDLENAELGLSLQRTRLSLYTCKRVGIFFLPMHQIN 54
          S HL R E VASILL DLEN E+GL L+RT LSLYTC RV IFF PM  I+
Sbjct: 4  SKHLCRIEAVASILLADLENGEVGLVLRRTSLSLYTCNRVRIFFFPMQSIS 54

BLAST of MS022214 vs. ExPASy TrEMBL
Match: A0A0A0K4V1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G023420 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.5e-07
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 3  SGHLPRFELVASILLPDLENAELGLSLQRTRLSLYTCKRVGIFFLPMHQINLSVFKDLMA 62
          S HL   E VAS+L  DLEN E  L L+RT LSLYTC R  IFF PM  ++  +F+  + 
Sbjct: 3  SKHLCIIEAVASVLFADLENGEPDLLLRRTSLSLYTCNREKIFFFPMQSLSF-LFQRYLR 62

Query: 63 MFVLCF 69
          M VLCF
Sbjct: 63 MLVLCF 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK23306.12.4e-0868.63hypothetical protein E5676_scaffold142G003640 [Cucumis melo var. makuwa][more]
XP_031744648.13.5e-0754.55uncharacterized protein LOC105436063 isoform X1 [Cucumis sativus] >XP_031744649.... [more]
XP_031744651.13.5e-0754.55uncharacterized protein LOC105436063 isoform X2 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DI441.2e-0868.63Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K4V18.5e-0753.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G023420 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS022214.1MS022214.1mRNA