MS022204 (gene) Bitter gourd (TR) v1

Overview


Name	MS022204
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	signal recognition particle 43 kDa protein, chloroplastic
Location	scaffold47: 1661044 .. 1662120 (+)
RNA-Seq Expression	MS022204
Synteny	MS022204

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCCCTTTTCCTCAACCAGTCCATTTCCCGCCTCAAAATCTCCCCCAAATCCAGCCCTCTTCCTCCCCTCTACCCCTCTCGAATTCCCAATCGCAATCTCAAATTCAGCGCCTGCGCAGTCCAAAACGACCAACGATTAGCACAGCAATCCAACCCGGCGATTTCCGCCGGGAAGTTCAACGAGGATGAAACTTACGGCGAAGTCGACGGAATCATCGGTAGCCGAGCGCTACAGGACGGCTCCGGAATGGAGTATTTAATCGCATGGAAAGACGGTCACGCCCCGTCCTGGGTGCCGTCCGATTTCATCGCCAGAGACGTGGTGGCGGAGTACGAGACGCCGTGGTGGACCGCCGCGAAGAAGGCCGACGAATCCGCGCTCAAGTCGCTGATAGACGCGGCGGACGGGCGCGATTTGGACGCAGTCGACGAGGACGGGAGGACGGCGCTGCTGTTCGTGGCGGGGCTGGGATCGGAGGCGTGCGTGAGGATGTTAGCGGAGGGCGGGGCGAACGTGGACCACCGCGACAACAGCGGCGGGTTCACGGCGCTGCACATGGCGGCCGGGTACGTGAAGCCGGGGGCGGTGGAGCAATTACTGGATCTGGGAGCAGATCCGGAAGTAGAGGACGAGAAGGGGCGGACGGCGCTGGAACTGGCGAGGGAGATTCTGAAGGCGACGCCGAGGATTCAGTTCGGGCGGCGGATGGGGCTGGAGAGGGTGGTCGGAGCGCTGGAGAAGGCGGTGTTTGAGTACGCGGAGGTGGAGGCGCTGCTGGAGAAGAGGGGGAAGGGGGAGAATTTGGAGTATCTGGTGAAGTGGAAGGATGGGGAAGACAACGAGTGGGTGAAGGCGGGGCTGATTGCGGCGGATTTGGTGGCGGATTTCGAGGCCGGACTGGAGTACGCGGTGGCGGAGGCGGTGGCCGGAAAGAGGATGGGGGACGACGGGAAGATGGAGTATCTTGTGAAATGGACGGATATTGAGGACGCCACGTGGGAGCCGGTGGATAATGTGGATCCTGATCTGATTAAGGAGTTTGAAGACGCCCAAGCCCAATCCAGTAATGGT

mRNA sequence

ATGGATGCCCTTTTCCTCAACCAGTCCATTTCCCGCCTCAAAATCTCCCCCAAATCCAGCCCTCTTCCTCCCCTCTACCCCTCTCGAATTCCCAATCGCAATCTCAAATTCAGCGCCTGCGCAGTCCAAAACGACCAACGATTAGCACAGCAATCCAACCCGGCGATTTCCGCCGGGAAGTTCAACGAGGATGAAACTTACGGCGAAGTCGACGGAATCATCGGTAGCCGAGCGCTACAGGACGGCTCCGGAATGGAGTATTTAATCGCATGGAAAGACGGTCACGCCCCGTCCTGGGTGCCGTCCGATTTCATCGCCAGAGACGTGGTGGCGGAGTACGAGACGCCGTGGTGGACCGCCGCGAAGAAGGCCGACGAATCCGCGCTCAAGTCGCTGATAGACGCGGCGGACGGGCGCGATTTGGACGCAGTCGACGAGGACGGGAGGACGGCGCTGCTGTTCGTGGCGGGGCTGGGATCGGAGGCGTGCGTGAGGATGTTAGCGGAGGGCGGGGCGAACGTGGACCACCGCGACAACAGCGGCGGGTTCACGGCGCTGCACATGGCGGCCGGGTACGTGAAGCCGGGGGCGGTGGAGCAATTACTGGATCTGGGAGCAGATCCGGAAGTAGAGGACGAGAAGGGGCGGACGGCGCTGGAACTGGCGAGGGAGATTCTGAAGGCGACGCCGAGGATTCAGTTCGGGCGGCGGATGGGGCTGGAGAGGGTGGTCGGAGCGCTGGAGAAGGCGGTGTTTGAGTACGCGGAGGTGGAGGCGCTGCTGGAGAAGAGGGGGAAGGGGGAGAATTTGGAGTATCTGGTGAAGTGGAAGGATGGGGAAGACAACGAGTGGGTGAAGGCGGGGCTGATTGCGGCGGATTTGGTGGCGGATTTCGAGGCCGGACTGGAGTACGCGGTGGCGGAGGCGGTGGCCGGAAAGAGGATGGGGGACGACGGGAAGATGGAGTATCTTGTGAAATGGACGGATATTGAGGACGCCACGTGGGAGCCGGTGGATAATGTGGATCCTGATCTGATTAAGGAGTTTGAAGACGCCCAAGCCCAATCCAGTAATGGT

Coding sequence (CDS)

ATGGATGCCCTTTTCCTCAACCAGTCCATTTCCCGCCTCAAAATCTCCCCCAAATCCAGCCCTCTTCCTCCCCTCTACCCCTCTCGAATTCCCAATCGCAATCTCAAATTCAGCGCCTGCGCAGTCCAAAACGACCAACGATTAGCACAGCAATCCAACCCGGCGATTTCCGCCGGGAAGTTCAACGAGGATGAAACTTACGGCGAAGTCGACGGAATCATCGGTAGCCGAGCGCTACAGGACGGCTCCGGAATGGAGTATTTAATCGCATGGAAAGACGGTCACGCCCCGTCCTGGGTGCCGTCCGATTTCATCGCCAGAGACGTGGTGGCGGAGTACGAGACGCCGTGGTGGACCGCCGCGAAGAAGGCCGACGAATCCGCGCTCAAGTCGCTGATAGACGCGGCGGACGGGCGCGATTTGGACGCAGTCGACGAGGACGGGAGGACGGCGCTGCTGTTCGTGGCGGGGCTGGGATCGGAGGCGTGCGTGAGGATGTTAGCGGAGGGCGGGGCGAACGTGGACCACCGCGACAACAGCGGCGGGTTCACGGCGCTGCACATGGCGGCCGGGTACGTGAAGCCGGGGGCGGTGGAGCAATTACTGGATCTGGGAGCAGATCCGGAAGTAGAGGACGAGAAGGGGCGGACGGCGCTGGAACTGGCGAGGGAGATTCTGAAGGCGACGCCGAGGATTCAGTTCGGGCGGCGGATGGGGCTGGAGAGGGTGGTCGGAGCGCTGGAGAAGGCGGTGTTTGAGTACGCGGAGGTGGAGGCGCTGCTGGAGAAGAGGGGGAAGGGGGAGAATTTGGAGTATCTGGTGAAGTGGAAGGATGGGGAAGACAACGAGTGGGTGAAGGCGGGGCTGATTGCGGCGGATTTGGTGGCGGATTTCGAGGCCGGACTGGAGTACGCGGTGGCGGAGGCGGTGGCCGGAAAGAGGATGGGGGACGACGGGAAGATGGAGTATCTTGTGAAATGGACGGATATTGAGGACGCCACGTGGGAGCCGGTGGATAATGTGGATCCTGATCTGATTAAGGAGTTTGAAGACGCCCAAGCCCAATCCAGTAATGGT

Protein sequence

MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLKFSACAVQNDQRLAQQSNPAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVAEYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLVADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQSSNG

Homology

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BLAST of MS022204 vs. NCBI nr
Match: XP_022135674.1 (signal recognition particle 43 kDa protein, chloroplastic [Momordica charantia])

HSP 1 Score: 705.7 bits (1820), Expect = 2.1e-199
Identity = 356/359 (99.16%), Postives = 357/359 (99.44%), Query Frame = 0


Query: 1   MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLKFSACAVQNDQRLAQQSNPAISAGK 60
           MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLKFSACAVQNDQRLAQQSN AISAGK
Sbjct: 1   MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLKFSACAVQNDQRLAQQSNAAISAGK 60

Query: 61  FNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVAEYETPWWTA 120
           FNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVAEYETPWWTA
Sbjct: 61  FNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVAEYETPWWTA 120

Query: 121 AKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNS 180
           AKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNS
Sbjct: 121 AKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNS 180

Query: 181 GGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGL 240
           GGFTALHMAAGYVKPGAVEQLLDLGA PEVEDEKGRTALELAREILKATPRIQFGRRMGL
Sbjct: 181 GGFTALHMAAGYVKPGAVEQLLDLGAYPEVEDEKGRTALELAREILKATPRIQFGRRMGL 240

Query: 241 ERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLVADFEA 300
           ERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLVADFEA
Sbjct: 241 ERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLVADFEA 300

Query: 301 GLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQSSNG 360
           GLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEP+DNVDPDLIKEFEDAQAQSSNG
Sbjct: 301 GLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPLDNVDPDLIKEFEDAQAQSSNG 359

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BLAST of MS022204 vs. NCBI nr
Match: XP_038888741.1 (signal recognition particle 43 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 560.1 bits (1442), Expect = 1.4e-155
Identity = 284/361 (78.67%), Postives = 310/361 (85.87%), Query Frame = 0


Query: 1   MDALFLNQSISRLKISPKSS-PLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNP 60
           MDA+F+NQS+SRLK+SPK   P PP   SR P+ NL+     F+  AVQ+DQ L QQ+  
Sbjct: 1   MDAVFVNQSLSRLKLSPKPPLPFPPSSSSRNPHLNLRRNFKHFTPYAVQSDQPLTQQTQ- 60

Query: 61  AISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVAEYE 120
                K  +DE+YGEVDGIIGSRAL D +GMEYLI WKDGH+PSWVPSDFIA+DVVAEYE
Sbjct: 61  -----KSEDDESYGEVDGIIGSRALSDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE 120

Query: 121 TPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANV 180
           TPWWTAAKKADESALKSLIDA DGRD DAVDEDGRTALLFVAGLGS  CVRMLAE G N+
Sbjct: 121 TPWWTAAKKADESALKSLIDAGDGRDFDAVDEDGRTALLFVAGLGSNPCVRMLAEAGVNL 180

Query: 181 DHRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQF 240
           DHRDNSGGFTALH+AAGYVKP  VE L++LGADPE+EDEKGRT L LA+EILKATPR+QF
Sbjct: 181 DHRDNSGGFTALHLAAGYVKPETVELLVELGADPEIEDEKGRTPLVLAKEILKATPRVQF 240

Query: 241 GRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADL 300
            RR+GLERV+GA+EK V+EYAEVE LLEKRGKGENLEYLVKWKDGEDNEWVK GLIA DL
Sbjct: 241 MRRIGLERVIGAVEKVVYEYAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDL 300

Query: 301 VADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQA 356
           VADFEAGLEYAVAEAV GKR GDDGKMEYLVKWTDI+DATWEP DNVDPDLI EFE AQA
Sbjct: 301 VADFEAGLEYAVAEAVVGKRFGDDGKMEYLVKWTDIQDATWEPQDNVDPDLIAEFEKAQA 355

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BLAST of MS022204 vs. NCBI nr
Match: XP_004153574.1 (signal recognition particle 43 kDa protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 553.1 bits (1424), Expect = 1.7e-153
Identity = 279/363 (76.86%), Postives = 317/363 (87.33%), Query Frame = 0


Query: 1   MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPA 60
           M+A+FLNQS+SRLK+ PK +PLP  +PS IP+ NL+     F+A AVQ+DQ + QQ+   
Sbjct: 1   MEAVFLNQSLSRLKLPPK-TPLP--FPSPIPHLNLRRNFTHFTAYAVQSDQPITQQTQ-- 60

Query: 61  ISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVAEYET 120
               K  +DE+YGEVDGIIGSRAL D +GMEYLI WKDGH+PSWVPSDFIA+DVVAEYET
Sbjct: 61  ----KPEDDESYGEVDGIIGSRALPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYET 120

Query: 121 PWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVD 180
           PWWTAAKKADESALKSLID+ D RD DAVDEDGRTALLFV+GLGS  CVR+LA+ G N++
Sbjct: 121 PWWTAAKKADESALKSLIDSGDERDFDAVDEDGRTALLFVSGLGSVECVRILADAGVNLN 180

Query: 181 HRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFG 240
           HRDNSGGFTALHMAAGYVKP  VE L++LGADPE++DEKGRTALELA+EILKATPR+QF 
Sbjct: 181 HRDNSGGFTALHMAAGYVKPETVELLVELGADPEIDDEKGRTALELAKEILKATPRVQFM 240

Query: 241 RRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLV 300
           RR+GLE+V+ A+EK V+EYAEVE LLEKRGKGENLEYLVKWKDGEDNEWVK GLIA DLV
Sbjct: 241 RRLGLEKVIRAVEKVVYEYAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLV 300

Query: 301 ADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQ 359
            D+EAGLEYAVAEAV GKR+GDDGKMEYLVKWTDI+DATWEP+DNVDPDLI EFE AQAQ
Sbjct: 301 GDYEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEPLDNVDPDLINEFEKAQAQ 354

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BLAST of MS022204 vs. NCBI nr
Match: XP_008447899.1 (PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Cucumis melo])

HSP 1 Score: 551.6 bits (1420), Expect = 5.0e-153
Identity = 277/362 (76.52%), Postives = 316/362 (87.29%), Query Frame = 0


Query: 1   MDALFLNQSISRLKISPKSS-PLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNP 60
           M+A+FLNQS+SRLK+ PK   PLP  +PS IP+ NL+     F+A AVQ+DQ + QQ+  
Sbjct: 1   MEAVFLNQSLSRLKLPPKPPLPLPIPFPSTIPHLNLRRNFTHFTAYAVQSDQPITQQTY- 60

Query: 61  AISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVAEYE 120
                K  +DE+YGEVDGIIGSRAL D +GMEYLI WKDGH+PSWVPSDFIA+DVVAEYE
Sbjct: 61  -----KPEDDESYGEVDGIIGSRALPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE 120

Query: 121 TPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANV 180
           TPWWTAAKKAD+SAL+SLID+ D RD DAVDEDGRTALLFV+GLGS  CVR+LAE G N+
Sbjct: 121 TPWWTAAKKADKSALESLIDSGDERDFDAVDEDGRTALLFVSGLGSVECVRILAEAGVNL 180

Query: 181 DHRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQF 240
           +HRDNSGGFTALHMAAGYVKP  VE L++LGADPE+EDEKGRTALELA+EILKATPR+QF
Sbjct: 181 NHRDNSGGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTALELAKEILKATPRVQF 240

Query: 241 GRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADL 300
            RR+GLE+V+GA+EK V+EYAEVE LLEKRGKGENLEYLVKWKDGEDNEWVK GLIA DL
Sbjct: 241 MRRLGLEKVIGAVEKVVYEYAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDL 300

Query: 301 VADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQA 357
           VAD+EAGLEYAVAEAV GKR+GD+GKMEYLVKWTDI+DATWEP+DNVDPDLI EFE AQA
Sbjct: 301 VADYEAGLEYAVAEAVVGKRVGDEGKMEYLVKWTDIQDATWEPLDNVDPDLINEFEKAQA 356

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BLAST of MS022204 vs. NCBI nr
Match: KAG6589032.1 (Signal recognition particle 43 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 533.5 bits (1373), Expect = 1.4e-147
Identity = 280/376 (74.47%), Postives = 315/376 (83.78%), Query Frame = 0


Query: 1   MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPA 60
           MDA+F+NQS+SRLK+ PK  PLP L PS I + +L+     F+A AV  ++ L QQ+   
Sbjct: 1   MDAVFVNQSLSRLKLPPK-PPLPKL-PSPILHLHLRRTFKSFTAYAV--NEPLTQQTQQP 60

Query: 61  ISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVAEYET 120
            +  +  +DE+YGEVDGIIGSRAL D +GMEYLI WKDGH+PSWVPSDFIA+DVVAEYET
Sbjct: 61  DNFPE--DDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYET 120

Query: 121 PWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVD 180
           PWWTAAKKADESALKSLIDAAD RD +AVDEDGRTALLFVAGLGSE C+R+LAE GA++D
Sbjct: 121 PWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLD 180

Query: 181 HRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFG 240
           HRD SGGFTALHMAAGYVKPG VE LL+LGADPEV+D+KGRT L LAREI+KATPR+QF 
Sbjct: 181 HRDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFA 240

Query: 241 RRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLV 300
           RR+GLERV+GALE+ VFE+AEVE LLEKRGKGENLEYLVKWKDGEDNEWVKA LIA DLV
Sbjct: 241 RRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLV 300

Query: 301 ADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFE----- 360
           ADFEAGLEYAVAEAV GKR+GDDGKMEYLVKWTDIEDATWEP  NVD DL+ EFE     
Sbjct: 301 ADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEGNVDSDLVTEFETGQKS 360

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BLAST of MS022204 vs. ExPASy Swiss-Prot
Match: O22265 (Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CAO PE=1 SV=2)

HSP 1 Score: 408.7 bits (1049), Expect = 6.9e-113
Identity = 214/362 (59.12%), Postives = 273/362 (75.41%), Query Frame = 0


Query: 3   ALFLNQSISRLKISP---KSSPLPPLYPSRIPNRNLK--FSACAVQNDQRLAQQSNPAIS 62
           AL ++QS+SR+K+SP    SS      P  +P R ++  F        QR  +++  ++ 
Sbjct: 12  ALVIHQSLSRIKLSPPKSSSSSSSAFSPESLPIRRIELCFRGAICAAVQRNYEETTSSVE 71

Query: 63  AGKFNED--ETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVAEYET 122
             + +++   +YGEV+ IIGSR   +G+ MEYLI WKDGH+PSWVPS +IA DVV+EYET
Sbjct: 72  EAEEDDESSSSYGEVNKIIGSRTAGEGA-MEYLIEWKDGHSPSWVPSSYIAADVVSEYET 131

Query: 123 PWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVD 182
           PWWTAA+KADE AL  L+   + RD+DAVDE+GRTALLFVAGLGS+ CVR+LAE GA++D
Sbjct: 132 PWWTAARKADEQALSQLL---EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 191

Query: 183 HRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELAREILKATPR---I 242
           HRD  GG TALHMAAGYV+P  VE L++LGAD EVEDE+G TALELAREILK TP+   +
Sbjct: 192 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 251

Query: 243 QFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAA 302
           QFGRR+GLE+V+  LE  VFEYAEV+ ++EKRGKG+++EYLV+WKDG D EWVK   +A 
Sbjct: 252 QFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 311

Query: 303 DLVADFEAGLEYAVAEAVAGKRMGDDGK-MEYLVKWTDIEDATWEPVDNVDPDLIKEFED 354
           D+  D+E GLEYAVAE+V GKR+GDDGK +EYLVKWTD+ DATWEP DNVD  L+  ++ 
Sbjct: 312 DVAKDYEDGLEYAVAESVIGKRVGDDGKTIEYLVKWTDMSDATWEPQDNVDSTLVLLYQQ 369

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BLAST of MS022204 vs. ExPASy Swiss-Prot
Match: Q8LSQ2 (Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0131900 PE=2 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 1.2e-93
Identity = 197/383 (51.44%), Postives = 253/383 (66.06%), Query Frame = 0


Query: 1   MDALFLNQSISRLK-ISPKSSPLPPL-----YPSRIPNRNLKFSACAVQNDQRLAQQSNP 60
           M+A+  + S+SRLK  +P +   P L     +  R+PNR L  +A AV  DQ      NP
Sbjct: 1   MEAVLRHPSLSRLKPPNPNAQRTPALSITVPFRLRLPNRRL--TAAAVFQDQ--TNPRNP 60

Query: 61  AISAGKFNEDETYGEVDGIIGSRAL------QDGS-----GMEYLIAWKDGHAPSWVPSD 120
           A   G  ++DE YGEVD I+ SR +      +DGS       EYL+ WKDGH PSW+P++
Sbjct: 61  ASKGG--DDDEAYGEVDRIVSSRTIKNPVFAEDGSATTVTATEYLVEWKDGHEPSWIPAE 120

Query: 121 FIARDVVAEYETPWWTAAKKADESALKSLI-DAADGRDLDAVDEDGRTALLFVAGLGSEA 180
            IA DVVAEYETPWWTAAKKAD + + +L+ D    RD DA D  GRTA+ F AGLGSE 
Sbjct: 121 AIAADVVAEYETPWWTAAKKADAAEITALLADETLRRDPDAEDAQGRTAMHFAAGLGSEE 180

Query: 181 CVRMLAEGGANVDHRDNS-GGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALEL 240
           CVR LAE GA+V   + + GG T LH+A GY +P AV  LL+LGA+PE  D +GRT LEL
Sbjct: 181 CVRALAEAGADVGRPERAGGGLTPLHIAVGYGRPAAVRALLELGAEPEAPDGQGRTPLEL 240

Query: 241 AREILKATPR---IQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKD 300
            +++L  TP+     F RR+ LE     LEKAV+E+ EVE +++ RG+G+  EYLV+W+D
Sbjct: 241 VQDVLAKTPKGNPATFERRLALEAAAKELEKAVYEWGEVEKVVDGRGEGKWREYLVEWRD 300

Query: 301 GEDNEWVKAGLIAADLVADFEAGLEYAVAEAVAGKRMG--DDGKMEYLVKWTDIEDATWE 360
           G D EWV+A  +A DLV DF+AGLEYAVAEAV  KR     +GK EYLVKW DIE+ATWE
Sbjct: 301 GGDREWVRAAWVAEDLVKDFDAGLEYAVAEAVVNKREAAEGEGKWEYLVKWVDIEEATWE 360

[Close]

BLAST of MS022204 vs. ExPASy Swiss-Prot
Match: Q06527 (Ankyrin homolog OS=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) OX=572477 GN=Alvin_1094 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-10
Identity = 47/108 (43.52%), Postives = 57/108 (52.78%), Query Frame = 0


Query: 112 EYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGG 171
           E  T    AA K +   L  LI+   G DL+A D+ G TALL  A  G    V  LA  G
Sbjct: 163 EGRTALMQAASKGETGVLPLLIEG--GADLEARDKQGATALLIAADQGQAGAVETLAGLG 222

Query: 172 ANVDHRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTAL 220
           A +D  D  G  TAL +A G+     VE+LL +GADP  +D KG TAL
Sbjct: 223 AQLDAVDALGS-TALILAVGHGHVAMVERLLAMGADPNRQDRKGTTAL 267

[Close]

BLAST of MS022204 vs. ExPASy Swiss-Prot
Match: Q69ZR2 (E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus OX=10090 GN=Hectd1 PE=1 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 3.5e-08
Identity = 35/103 (33.98%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 122 KKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSG 181
           +  D  AL   ID     +++ +D+ G+T L + +  G++  V  L E GA+V+    S 
Sbjct: 371 RSKDTDALIDAIDTGAAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNRGQRS- 430

Query: 182 GFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELARE 225
             ++LH AA + +P   + LL  GA+P++ DE G+T L+ ARE
Sbjct: 431 --SSLHYAACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKARE 470

[Close]

BLAST of MS022204 vs. ExPASy Swiss-Prot
Match: Q9VL06 (E3 ubiquitin-protein ligase Ufd4 OS=Drosophila melanogaster OX=7227 GN=Ufd4 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.6e-08
Identity = 37/105 (35.24%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 122 KKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNSG 181
           +  D  AL+  I++  G D++ +D+ G+T L + +  G+   V  L E GA+V+    S 
Sbjct: 398 RSKDSEALREAIESG-GIDVNCMDDVGQTLLNWASAFGTLEMVEYLCEKGADVNKGQRS- 457

Query: 182 GFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELAREIL 227
             ++LH AA + +P   + LL  GA P++ DE G+T L+ ARE L
Sbjct: 458 --SSLHYAACFGRPAIAKILLKFGAYPDLRDEDGKTPLDKARERL 498

[Close]

BLAST of MS022204 vs. ExPASy TrEMBL
Match: A0A6J1C248 (signal recognition particle 43 kDa protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111007575 PE=4 SV=1)

HSP 1 Score: 705.7 bits (1820), Expect = 1.0e-199
Identity = 356/359 (99.16%), Postives = 357/359 (99.44%), Query Frame = 0


Query: 1   MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLKFSACAVQNDQRLAQQSNPAISAGK 60
           MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLKFSACAVQNDQRLAQQSN AISAGK
Sbjct: 1   MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLKFSACAVQNDQRLAQQSNAAISAGK 60

Query: 61  FNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVAEYETPWWTA 120
           FNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVAEYETPWWTA
Sbjct: 61  FNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVAEYETPWWTA 120

Query: 121 AKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNS 180
           AKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNS
Sbjct: 121 AKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNS 180

Query: 181 GGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFGRRMGL 240
           GGFTALHMAAGYVKPGAVEQLLDLGA PEVEDEKGRTALELAREILKATPRIQFGRRMGL
Sbjct: 181 GGFTALHMAAGYVKPGAVEQLLDLGAYPEVEDEKGRTALELAREILKATPRIQFGRRMGL 240

Query: 241 ERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLVADFEA 300
           ERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLVADFEA
Sbjct: 241 ERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLVADFEA 300

Query: 301 GLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQSSNG 360
           GLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEP+DNVDPDLIKEFEDAQAQSSNG
Sbjct: 301 GLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPLDNVDPDLIKEFEDAQAQSSNG 359

[Close]

BLAST of MS022204 vs. ExPASy TrEMBL
Match: A0A0A0K634 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G018780 PE=4 SV=1)

HSP 1 Score: 553.1 bits (1424), Expect = 8.4e-154
Identity = 279/363 (76.86%), Postives = 317/363 (87.33%), Query Frame = 0


Query: 1   MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPA 60
           M+A+FLNQS+SRLK+ PK +PLP  +PS IP+ NL+     F+A AVQ+DQ + QQ+   
Sbjct: 1   MEAVFLNQSLSRLKLPPK-TPLP--FPSPIPHLNLRRNFTHFTAYAVQSDQPITQQTQ-- 60

Query: 61  ISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVAEYET 120
               K  +DE+YGEVDGIIGSRAL D +GMEYLI WKDGH+PSWVPSDFIA+DVVAEYET
Sbjct: 61  ----KPEDDESYGEVDGIIGSRALPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYET 120

Query: 121 PWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVD 180
           PWWTAAKKADESALKSLID+ D RD DAVDEDGRTALLFV+GLGS  CVR+LA+ G N++
Sbjct: 121 PWWTAAKKADESALKSLIDSGDERDFDAVDEDGRTALLFVSGLGSVECVRILADAGVNLN 180

Query: 181 HRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFG 240
           HRDNSGGFTALHMAAGYVKP  VE L++LGADPE++DEKGRTALELA+EILKATPR+QF 
Sbjct: 181 HRDNSGGFTALHMAAGYVKPETVELLVELGADPEIDDEKGRTALELAKEILKATPRVQFM 240

Query: 241 RRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLV 300
           RR+GLE+V+ A+EK V+EYAEVE LLEKRGKGENLEYLVKWKDGEDNEWVK GLIA DLV
Sbjct: 241 RRLGLEKVIRAVEKVVYEYAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDLV 300

Query: 301 ADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQAQ 359
            D+EAGLEYAVAEAV GKR+GDDGKMEYLVKWTDI+DATWEP+DNVDPDLI EFE AQAQ
Sbjct: 301 GDYEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEPLDNVDPDLINEFEKAQAQ 354

[Close]

BLAST of MS022204 vs. ExPASy TrEMBL
Match: A0A1S3BHX6 (signal recognition particle 43 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490246 PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 2.4e-153
Identity = 277/362 (76.52%), Postives = 316/362 (87.29%), Query Frame = 0


Query: 1   MDALFLNQSISRLKISPKSS-PLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNP 60
           M+A+FLNQS+SRLK+ PK   PLP  +PS IP+ NL+     F+A AVQ+DQ + QQ+  
Sbjct: 1   MEAVFLNQSLSRLKLPPKPPLPLPIPFPSTIPHLNLRRNFTHFTAYAVQSDQPITQQTY- 60

Query: 61  AISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVAEYE 120
                K  +DE+YGEVDGIIGSRAL D +GMEYLI WKDGH+PSWVPSDFIA+DVVAEYE
Sbjct: 61  -----KPEDDESYGEVDGIIGSRALPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE 120

Query: 121 TPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANV 180
           TPWWTAAKKAD+SAL+SLID+ D RD DAVDEDGRTALLFV+GLGS  CVR+LAE G N+
Sbjct: 121 TPWWTAAKKADKSALESLIDSGDERDFDAVDEDGRTALLFVSGLGSVECVRILAEAGVNL 180

Query: 181 DHRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQF 240
           +HRDNSGGFTALHMAAGYVKP  VE L++LGADPE+EDEKGRTALELA+EILKATPR+QF
Sbjct: 181 NHRDNSGGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTALELAKEILKATPRVQF 240

Query: 241 GRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADL 300
            RR+GLE+V+GA+EK V+EYAEVE LLEKRGKGENLEYLVKWKDGEDNEWVK GLIA DL
Sbjct: 241 MRRLGLEKVIGAVEKVVYEYAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDL 300

Query: 301 VADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFEDAQA 357
           VAD+EAGLEYAVAEAV GKR+GD+GKMEYLVKWTDI+DATWEP+DNVDPDLI EFE AQA
Sbjct: 301 VADYEAGLEYAVAEAVVGKRVGDEGKMEYLVKWTDIQDATWEPLDNVDPDLINEFEKAQA 356

[Close]

BLAST of MS022204 vs. ExPASy TrEMBL
Match: A0A6J1EP65 (signal recognition particle 43 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111435281 PE=4 SV=1)

HSP 1 Score: 533.5 bits (1373), Expect = 6.9e-148
Identity = 280/376 (74.47%), Postives = 315/376 (83.78%), Query Frame = 0


Query: 1   MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPA 60
           MDA+F+NQS+SRLK+ PK  PLP L PS I + +L+     F+A AV  ++ L QQ+   
Sbjct: 57  MDAVFVNQSLSRLKLPPK-PPLPKL-PSPILHLHLRRTFKSFTAYAV--NEPLTQQTQQP 116

Query: 61  ISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVAEYET 120
            +  +  +DE+YGEVDGIIGSRAL D +GMEYLI WKDGH+PSWVPSDFIA+DVVAEYET
Sbjct: 117 DNFPE--DDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYET 176

Query: 121 PWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVD 180
           PWWTAAKKADESALKSLIDAAD RD +AVDEDGRTALLFVAGLGSE C+R+LAE GA++D
Sbjct: 177 PWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLD 236

Query: 181 HRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFG 240
           HRD SGGFTALHMAAGYVKPG VE LL+LGADPEV+D+KGRT L LAREI+KATPR+QF 
Sbjct: 237 HRDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFA 296

Query: 241 RRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLV 300
           RR+GLERV+GALE+ VFE+AEVE LLEKRGKGENLEYLVKWKDGEDNEWVKA LIA DLV
Sbjct: 297 RRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLV 356

Query: 301 ADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFE----- 360
           ADFEAGLEYAVAEAV GKR+GDDGKMEYLVKWTDIEDATWEP  NVD DL+ EFE     
Sbjct: 357 ADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEGNVDSDLVTEFETGQKS 416

[Close]

BLAST of MS022204 vs. ExPASy TrEMBL
Match: A0A6J1JM92 (signal recognition particle 43 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486468 PE=4 SV=1)

HSP 1 Score: 531.2 bits (1367), Expect = 3.4e-147
Identity = 280/376 (74.47%), Postives = 314/376 (83.51%), Query Frame = 0


Query: 1   MDALFLNQSISRLKISPKSSPLPPLYPSRIPNRNLK-----FSACAVQNDQRLAQQSNPA 60
           MDA+F+NQS+S LK+ PK  PLP L PS I + +L+     F+A AV  ++ L QQ+   
Sbjct: 50  MDAVFVNQSLSSLKLPPK-PPLPKL-PSPILHLHLRRTFKSFTAYAV--NEPLTQQTQQP 109

Query: 61  ISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVAEYET 120
            +  +  +DE+YGEVDGIIGSR+L D +GMEYLI WKDGH+PSWVPSDFIA+DVVAEYET
Sbjct: 110 DNFPE--DDESYGEVDGIIGSRSLADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYET 169

Query: 121 PWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVD 180
           PWWTAAKKADESALKSLIDAAD RD +AVDEDGRTALLFVAGLGSE CVR+LAE GA++D
Sbjct: 170 PWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCVRILAEAGADLD 229

Query: 181 HRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELAREILKATPRIQFG 240
           HRD SGGFTALHMAAGYVKPG VE LL+LGADPEV+D+KGRT L LAREI+KATPR+QF 
Sbjct: 230 HRDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFA 289

Query: 241 RRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAADLV 300
           RR+GLERV+GALE+ VFE+AEVE LLEKRGKGENLEYLVKWKDGEDNEWVKA LIA DLV
Sbjct: 290 RRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLV 349

Query: 301 ADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEPVDNVDPDLIKEFE----- 360
           ADFEAGLEYAVAEAV GKR+GDDGKMEYLVKWTDIEDATWEP  NVD DLI EFE     
Sbjct: 350 ADFEAGLEYAVAEAVVGKRLGDDGKMEYLVKWTDIEDATWEPEGNVDSDLIAEFETGQKS 409

[Close]

BLAST of MS022204 vs. TAIR 10
Match: AT2G47450.1 (chloroplast signal recognition particle component (CAO) )

HSP 1 Score: 408.7 bits (1049), Expect = 4.9e-114
Identity = 214/362 (59.12%), Postives = 273/362 (75.41%), Query Frame = 0


Query: 3   ALFLNQSISRLKISP---KSSPLPPLYPSRIPNRNLK--FSACAVQNDQRLAQQSNPAIS 62
           AL ++QS+SR+K+SP    SS      P  +P R ++  F        QR  +++  ++ 
Sbjct: 12  ALVIHQSLSRIKLSPPKSSSSSSSAFSPESLPIRRIELCFRGAICAAVQRNYEETTSSVE 71

Query: 63  AGKFNED--ETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVAEYET 122
             + +++   +YGEV+ IIGSR   +G+ MEYLI WKDGH+PSWVPS +IA DVV+EYET
Sbjct: 72  EAEEDDESSSSYGEVNKIIGSRTAGEGA-MEYLIEWKDGHSPSWVPSSYIAADVVSEYET 131

Query: 123 PWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVD 182
           PWWTAA+KADE AL  L+   + RD+DAVDE+GRTALLFVAGLGS+ CVR+LAE GA++D
Sbjct: 132 PWWTAARKADEQALSQLL---EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 191

Query: 183 HRDNSGGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELAREILKATPR---I 242
           HRD  GG TALHMAAGYV+P  VE L++LGAD EVEDE+G TALELAREILK TP+   +
Sbjct: 192 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 251

Query: 243 QFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIAA 302
           QFGRR+GLE+V+  LE  VFEYAEV+ ++EKRGKG+++EYLV+WKDG D EWVK   +A 
Sbjct: 252 QFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 311

Query: 303 DLVADFEAGLEYAVAEAVAGKRMGDDGK-MEYLVKWTDIEDATWEPVDNVDPDLIKEFED 354
           D+  D+E GLEYAVAE+V GKR+GDDGK +EYLVKWTD+ DATWEP DNVD  L+  ++ 
Sbjct: 312 DVAKDYEDGLEYAVAESVIGKRVGDDGKTIEYLVKWTDMSDATWEPQDNVDSTLVLLYQQ 369

[Close]

BLAST of MS022204 vs. TAIR 10
Match: AT5G13530.1 (protein kinases;ubiquitin-protein ligases )

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-08
Identity = 33/104 (31.73%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 120 AAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDN 179
           A ++     ++++++  +  ++D VD+DG   L+F    GS  CV +L + GANV  R  
Sbjct: 518 ACRRGSAELVEAILEYGEA-NVDIVDKDGDPPLVFALAAGSPQCVHVLIKKGANVRSRLR 577

Query: 180 SG-GFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELA 223
            G G +  H+ + + +P  + +LL  GADP   D++G T L  A
Sbjct: 578 EGSGPSVAHVCSYHGQPDCMRELLVAGADPNAVDDEGETVLHRA 620

[Close]

BLAST of MS022204 vs. TAIR 10
Match: AT5G13530.2 (protein kinases;ubiquitin-protein ligases )

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-08
Identity = 33/104 (31.73%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 120 AAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDN 179
           A ++     ++++++  +  ++D VD+DG   L+F    GS  CV +L + GANV  R  
Sbjct: 518 ACRRGSAELVEAILEYGEA-NVDIVDKDGDPPLVFALAAGSPQCVHVLIKKGANVRSRLR 577

Query: 180 SG-GFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELA 223
            G G +  H+ + + +P  + +LL  GADP   D++G T L  A
Sbjct: 578 EGSGPSVAHVCSYHGQPDCMRELLVAGADPNAVDDEGETVLHRA 620

[Close]

BLAST of MS022204 vs. TAIR 10
Match: AT2G17390.1 (ankyrin repeat-containing 2B )

HSP 1 Score: 56.6 bits (135), Expect = 4.7e-08
Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = 0


Query: 121 AKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNS 180
           A   D   LK+ +  A G + D  D +GRTAL F  G G   C ++L + GAN +  D +
Sbjct: 228 ASLGDVEGLKAAL--ASGGNKDEEDSEGRTALHFACGYGEVRCAQVLLDAGANANAIDKN 287

Query: 181 GGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELAR 224
              T LH AAGY +   V  LL+ GA    ++   +  +++AR
Sbjct: 288 KN-TPLHYAAGYGRKECVSLLLENGAAVTQQNMDNKNPIDVAR 327

[Close]

BLAST of MS022204 vs. TAIR 10
Match: AT4G35450.3 (ankyrin repeat-containing protein 2 )

HSP 1 Score: 56.6 bits (135), Expect = 4.7e-08
Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 121 AKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGGANVDHRDNS 180
           A   D   LK+ +  A G + D  D +GRTAL F  G G   C ++L + GA+V+  D +
Sbjct: 226 ASLGDVEGLKAAL--ASGGNKDEEDSEGRTALHFACGYGELKCAQVLIDAGASVNAVDKN 285

Query: 181 GGFTALHMAAGYVKPGAVEQLLDLGADPEVEDEKGRTALELAR 224
              T LH AAGY +   V  LL+ GA   +++   +T +++A+
Sbjct: 286 KN-TPLHYAAGYGRKECVSLLLENGAAVTLQNLDEKTPIDVAK 325

The following BLAST results are available for this feature:

BLAST of MS022204 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135674.1	2.1e-199	99.16	signal recognition particle 43 kDa protein, chloroplastic [Momordica charantia]	[more]
XP_038888741.1	1.4e-155	78.67	signal recognition particle 43 kDa protein, chloroplastic [Benincasa hispida]	[more]
XP_004153574.1	1.7e-153	76.86	signal recognition particle 43 kDa protein, chloroplastic [Cucumis sativus]	[more]
XP_008447899.1	5.0e-153	76.52	PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Cucumis me...	[more]
KAG6589032.1	1.4e-147	74.47	Signal recognition particle 43 kDa protein, chloroplastic, partial [Cucurbita ar...	[more]

BLAST of MS022204 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22265	6.9e-113	59.12	Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thalian...	[more]
Q8LSQ2	1.2e-93	51.44	Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sati...	[more]
Q06527	3.8e-10	43.52	Ankyrin homolog OS=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 10...	[more]
Q69ZR2	3.5e-08	33.98	E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus OX=10090 GN=Hectd1 PE=1 SV=2	[more]
Q9VL06	4.6e-08	35.24	E3 ubiquitin-protein ligase Ufd4 OS=Drosophila melanogaster OX=7227 GN=Ufd4 PE=2...	[more]

BLAST of MS022204 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C248	1.0e-199	99.16	signal recognition particle 43 kDa protein, chloroplastic OS=Momordica charantia...	[more]
A0A0A0K634	8.4e-154	76.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G018780 PE=4 SV=1	[more]
A0A1S3BHX6	2.4e-153	76.52	signal recognition particle 43 kDa protein, chloroplastic OS=Cucumis melo OX=365...	[more]
A0A6J1EP65	6.9e-148	74.47	signal recognition particle 43 kDa protein, chloroplastic-like OS=Cucurbita mosc...	[more]
A0A6J1JM92	3.4e-147	74.47	signal recognition particle 43 kDa protein, chloroplastic OS=Cucurbita maxima OX...	[more]

BLAST of MS022204 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47450.1	4.9e-114	59.12	chloroplast signal recognition particle component (CAO)	[more]
AT5G13530.1	1.2e-08	31.73	protein kinases;ubiquitin-protein ligases	[more]
AT5G13530.2	1.2e-08	31.73	protein kinases;ubiquitin-protein ligases	[more]
AT2G17390.1	4.7e-08	34.95	ankyrin repeat-containing 2B	[more]
AT4G35450.3	4.7e-08	34.95	ankyrin repeat-containing protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000953	Chromo/chromo shadow domain	SMART	SM00298	chromo_7	coord: 253..303 e-value: 3.1E-8 score: 43.3 coord: 66..118 e-value: 0.13 score: 21.4 coord: 304..354 e-value: 9.6E-7 score: 38.4
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 305..359 score: 10.711301
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 255..284 score: 8.557401
IPR002110	Ankyrin repeat	SMART	SM00248	ANK_2a	coord: 181..210 e-value: 0.01 score: 25.0 coord: 147..176 e-value: 3.4 score: 16.7 coord: 112..143 e-value: 480.0 score: 7.4
IPR002110	Ankyrin repeat	PROSITE	PS50088	ANK_REPEAT	coord: 181..213 score: 10.87314
IPR002110	Ankyrin repeat	PROSITE	PS50088	ANK_REPEAT	coord: 147..179 score: 10.44578
None	No IPR available	PFAM	PF13857	Ank_5	coord: 167..222 e-value: 1.5E-9 score: 37.9
None	No IPR available	GENE3D	2.40.50.40		coord: 60..111 e-value: 8.9E-15 score: 56.0 coord: 301..353 e-value: 1.8E-25 score: 90.3
None	No IPR available	GENE3D	2.40.50.40		coord: 251..300 e-value: 4.2E-19 score: 69.8
None	No IPR available	PANTHER	PTHR24128	HOMEOBOX PROTEIN WARIAI	coord: 1..355
None	No IPR available	PROSITE	PS50297	ANK_REP_REGION	coord: 181..213 score: 9.516039
None	No IPR available	PROSITE	PS50297	ANK_REP_REGION	coord: 147..179 score: 9.091537
None	No IPR available	CDD	cd18628	CD3_cpSRP43_like	coord: 302..350 e-value: 2.03513E-11 score: 56.6208
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 112..250 e-value: 1.1E-35 score: 124.2
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 113..224
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 307..351 e-value: 2.3E-7 score: 30.6
IPR030300	Signal recognition particle 43kDa protein	PANTHER	PTHR24128:SF43	SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC	coord: 1..355
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 303..351
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 64..117
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 253..301

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS022204.1	MS022204.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045038	protein import into chloroplast thylakoid membrane
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0080085	signal recognition particle, chloroplast targeting
molecular_function	GO:0005515	protein binding