MS022089 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGAAGAACAAGAGAATTAGAGACGGCGGCGGGAAGGGAGCCGCCGGCGACCACTGCCCTTCCAAGGTTTTTGTCAAGAACTTGCCGTACTCCTTCACCAATTCGCAGGTTCGCACTTCCTATGTTGCTTGCTCGTTTCCTGAGGAAAAAACGGAGATGAAAATACGAATATAGATTTTTATTTTTATTTTTGCTGTTTTGTTCTTAATCTCAAACTTAAGGAAGCACGCAATCGAGTGTTTTTTGATGAGAAGTTATTGGTTTCACAAGAAGTTTACGAGAAAGCAATGTTTTGATTTGATTTCTATTTCTCTCGAATTGTTTTGCTGTTAATTGGAATGTTAGTGACCTTTTCCTTTATTTTCTCAATGAACTAGCTCGAAGAAACATTCAGTGATGTTGGACCGGTCCGGCGGTGCTTCATGGTTACTCAGAAGGGTAAATACATCTGTGCATGGCTATCTTAAATTGGGGTTTAATTGCACTTAGTGTACTTTTATCCTTTTTCATTGAAAGATCCTCTTTCGTGAGCCTCATTCTGCATTTCCGTTTTTGGGCGATTGAATAGAAGCTGACTGTTGTGCTTTATTGTTTCGACCTCTTCAGTTCAGACGACATGTTGAGATATGTTCATTGTTAATTCTTTTAAACCTATCTTATCTTGTTTCATCAGGTTCAACTGAGCACCGCGGTTTTGGATTTGTGCAATTG ATGGGGAAGAACAAGAGAATTAGAGACGGCGGCGGGAAGGGAGCCGCCGGCGACCACTGCCCTTCCAAGGTTTTTGTCAAGAACTTGCCGTACTCCTTCACCAATTCGCAGCTCGAAGAAACATTCAGTGATGTTGGACCGGTCCGGCGGTGCTTCATGGTTACTCAGAAGGGTTCAACTGAGCACCGCGGTTTTGGATTTGTGCAATTG ATGGGGAAGAACAAGAGAATTAGAGACGGCGGCGGGAAGGGAGCCGCCGGCGACCACTGCCCTTCCAAGGTTTTTGTCAAGAACTTGCCGTACTCCTTCACCAATTCGCAGCTCGAAGAAACATTCAGTGATGTTGGACCGGTCCGGCGGTGCTTCATGGTTACTCAGAAGGGTTCAACTGAGCACCGCGGTTTTGGATTTGTGCAATTG MGKNKRIRDGGGKGAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQL Homology
BLAST of MS022089 vs. NCBI nr
Match: XP_022135783.1 (RNA-binding protein 28 isoform X1 [Momordica charantia]) HSP 1 Score: 149.4 bits (376), Expect = 1.1e-32 Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
BLAST of MS022089 vs. NCBI nr
Match: XP_022135784.1 (RNA-binding protein 28 isoform X2 [Momordica charantia]) HSP 1 Score: 149.4 bits (376), Expect = 1.1e-32 Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
BLAST of MS022089 vs. NCBI nr
Match: XP_038888249.1 (RNA-binding protein 28 [Benincasa hispida]) HSP 1 Score: 139.8 bits (351), Expect = 8.9e-30 Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 0
BLAST of MS022089 vs. NCBI nr
Match: KAG7011721.1 (RNA-binding protein 28, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 137.9 bits (346), Expect = 3.4e-29 Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 0
BLAST of MS022089 vs. NCBI nr
Match: XP_023511705.1 (RNA-binding protein 28 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 137.9 bits (346), Expect = 3.4e-29 Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 0
BLAST of MS022089 vs. ExPASy Swiss-Prot
Match: Q9NW13 (RNA-binding protein 28 OS=Homo sapiens OX=9606 GN=RBM28 PE=1 SV=3) HSP 1 Score: 60.5 bits (145), Expect = 9.0e-09 Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 0
BLAST of MS022089 vs. ExPASy Swiss-Prot
Match: Q8CGC6 (RNA-binding protein 28 OS=Mus musculus OX=10090 GN=Rbm28 PE=1 SV=4) HSP 1 Score: 60.5 bits (145), Expect = 9.0e-09 Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 0
BLAST of MS022089 vs. ExPASy Swiss-Prot
Match: O74400 (Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC4F6.14 PE=1 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 6.0e-05 Identity = 20/47 (42.55%), Postives = 29/47 (61.70%), Query Frame = 0
BLAST of MS022089 vs. ExPASy Swiss-Prot
Match: Q9GZT3 (SRA stem-loop-interacting RNA-binding protein, mitochondrial OS=Homo sapiens OX=9606 GN=SLIRP PE=1 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 7.9e-05 Identity = 20/45 (44.44%), Postives = 30/45 (66.67%), Query Frame = 0
BLAST of MS022089 vs. ExPASy Swiss-Prot
Match: Q5R8K3 (SRA stem-loop-interacting RNA-binding protein, mitochondrial OS=Pongo abelii OX=9601 GN=SLIRP PE=3 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 7.9e-05 Identity = 20/45 (44.44%), Postives = 30/45 (66.67%), Query Frame = 0
BLAST of MS022089 vs. ExPASy TrEMBL
Match: A0A6J1C5V7 (RNA-binding protein 28 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007662 PE=4 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 5.4e-33 Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
BLAST of MS022089 vs. ExPASy TrEMBL
Match: A0A6J1C2G5 (RNA-binding protein 28 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007662 PE=4 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 5.4e-33 Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
BLAST of MS022089 vs. ExPASy TrEMBL
Match: A0A6J1IG31 (RNA-binding protein 28 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111474290 PE=4 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 3.6e-29 Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0
BLAST of MS022089 vs. ExPASy TrEMBL
Match: A0A6J1IIK5 (RNA-binding protein 28 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111474290 PE=4 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 3.6e-29 Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0
BLAST of MS022089 vs. ExPASy TrEMBL
Match: A0A6J1IDH9 (RNA-binding protein 28 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111474290 PE=4 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 3.6e-29 Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0
BLAST of MS022089 vs. TAIR 10
Match: AT2G21440.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 87.8 bits (216), Expect = 3.7e-18 Identity = 43/69 (62.32%), Postives = 49/69 (71.01%), Query Frame = 0
BLAST of MS022089 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 ) HSP 1 Score: 44.3 bits (103), Expect = 4.7e-05 Identity = 19/48 (39.58%), Postives = 30/48 (62.50%), Query Frame = 0
BLAST of MS022089 vs. TAIR 10
Match: AT1G71800.1 (cleavage stimulating factor 64 ) HSP 1 Score: 43.9 bits (102), Expect = 6.2e-05 Identity = 19/46 (41.30%), Postives = 28/46 (60.87%), Query Frame = 0
BLAST of MS022089 vs. TAIR 10
Match: AT2G36660.1 (poly(A) binding protein 7 ) HSP 1 Score: 43.5 bits (101), Expect = 8.1e-05 Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 0
BLAST of MS022089 vs. TAIR 10
Match: AT4G24770.1 (31-kDa RNA binding protein ) HSP 1 Score: 42.7 bits (99), Expect = 1.4e-04 Identity = 19/48 (39.58%), Postives = 29/48 (60.42%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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