MS022021 (gene) Bitter gourd (TR) v1

Overview
NameMS022021
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsuccinate dehydrogenase subunit 5, mitochondrial-like
Locationscaffold47: 51561 .. 53001 (-)
RNA-Seq ExpressionMS022021
SyntenyMS022021
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAAATGGTGATTCTGAGATCACTATTGCGTTCTGTTCGCGTCGGATCTTACGGGGTCGCCGGAGTTAGACACCGGAATTTGCTGCAAAGTCACCACCAGGCTGCTCGAAGTTTCTTCTATCTGTCGTCTCATCGTTCTTCTCTTTCAGATTTTCCGCAGAGAGTTTCCTCCGGTACTTCTCCTTCTTCTGATTAGTTATATTTATACTCTGTTTTGTACATTGATTCAAATCTCTCCGTTTAATCTTGTAATAAAGTGGAGTAATCTGTTCGATAGTGTTTTATTCTACTTGTTTAATGCTAGCTATTGATTCTTTTGTCGGTTAGTGATCGATAAACTGCCTTCTCCTTCCTCTCGAACCTTTCTATTATTTGTTCTTGTGATGCTAGGATTCCCCCTGGATGGTTAGCCACGATTTATCTTCTCCTCTCCTGAAAAATGTATGTTTAAACTTTGGATTTTGTCACTCGATAAGTGAACTCACACATGAATTTATTGTATGCTGGTTATTTTGTCTTATAGATTCGATTAGGAACTCCTTTGTGCAATTTCTTATTAAATATATGGTTCTCTCTCATAAAATTTCAAATTCAGATATTTGCTTCTGTATTTGTACAGTAAATTTGCTATATTCGATTAGGAACTGTATTTGTTTCAACCTATTCTGTGTGGCAATGTGCATTGCCGTGGTAGAGTAGTTTCAGAAAATTTCAGAAATAACCATATGTCGTAACCATGCCAGCCGGCCATGATGATCTGAAGTGTCTGAACAATCTAGAAGGGCTCAGTTAAATTCTTTTTTCAGTATCACAATATTTGGAATGATATCATATTTCTGTTTCTTCTGGTAAATTTCTGCAGATTGTTGTTATCTATCTGGTGTAGGGCGTGCGAGACTTTTTAGTGTTGATGTAGTTCGTATGCCTACAATTGAAGATTCCAAGCTTCAAAATGTTTTCAAGGATTTGATGGCTACAAGTTGGGATGAGCTTCCTAACTCAGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGACGACAAGGCCGGAAAGGAAGTTGTGGAAAACGTTTTCCGAGCTGCTGAAGCAGTTGAGGAATTTGGTGGTATACTTATCAGTTTGAAAATGAAAATTGATGATAGTATTGGTCTCAGTGGCGAGGTATTGAAAATTATAATTTTTTCAAACTAATTTTTTTCTCCAGTTTTTGTTCAATTAAAAACTTCAAAATCCATGTGCAGGATGTTAAGCCTTTGTCCGATGAACTTAAGAATGCACTACATACAGTTCACGATCGCTATACAACCTACTTGGATGCATTTGGTCCCGAGGAGAACTATCTGCGGAAGAAAGTGGAGACAGAGTTGGGAACAAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCTGAGTGGGGAAAGGTA

mRNA sequence

ATGGAGAAAATGGTGATTCTGAGATCACTATTGCGTTCTGTTCGCGTCGGATCTTACGGGGTCGCCGGAGTTAGACACCGGAATTTGCTGCAAAGTCACCACCAGGCTGCTCGAAGTTTCTTCTATCTGTCGTCTCATCGTTCTTCTCTTTCAGATTTTCCGCAGAGAGTTTCCTCCGATTGTTGTTATCTATCTGGTGTAGGGCGTGCGAGACTTTTTAGTGTTGATGTAGTTCGTATGCCTACAATTGAAGATTCCAAGCTTCAAAATGTTTTCAAGGATTTGATGGCTACAAGTTGGGATGAGCTTCCTAACTCAGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGACGACAAGGCCGGAAAGGAAGTTGTGGAAAACGTTTTCCGAGCTGCTGAAGCAGTTGAGGAATTTGGTGGTATACTTATCAGTTTGAAAATGAAAATTGATGATAGTATTGGTCTCAGTGGCGAGGATGTTAAGCCTTTGTCCGATGAACTTAAGAATGCACTACATACAGTTCACGATCGCTATACAACCTACTTGGATGCATTTGGTCCCGAGGAGAACTATCTGCGGAAGAAAGTGGAGACAGAGTTGGGAACAAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCTGAGTGGGGAAAGGTA

Coding sequence (CDS)

ATGGAGAAAATGGTGATTCTGAGATCACTATTGCGTTCTGTTCGCGTCGGATCTTACGGGGTCGCCGGAGTTAGACACCGGAATTTGCTGCAAAGTCACCACCAGGCTGCTCGAAGTTTCTTCTATCTGTCGTCTCATCGTTCTTCTCTTTCAGATTTTCCGCAGAGAGTTTCCTCCGATTGTTGTTATCTATCTGGTGTAGGGCGTGCGAGACTTTTTAGTGTTGATGTAGTTCGTATGCCTACAATTGAAGATTCCAAGCTTCAAAATGTTTTCAAGGATTTGATGGCTACAAGTTGGGATGAGCTTCCTAACTCAGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGACGACAAGGCCGGAAAGGAAGTTGTGGAAAACGTTTTCCGAGCTGCTGAAGCAGTTGAGGAATTTGGTGGTATACTTATCAGTTTGAAAATGAAAATTGATGATAGTATTGGTCTCAGTGGCGAGGATGTTAAGCCTTTGTCCGATGAACTTAAGAATGCACTACATACAGTTCACGATCGCTATACAACCTACTTGGATGCATTTGGTCCCGAGGAGAACTATCTGCGGAAGAAAGTGGAGACAGAGTTGGGAACAAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCTGAGTGGGGAAAGGTA

Protein sequence

MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSDCCYLSGVGRARLFSVDVVRMPTIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTDDKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDRYTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV
Homology
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BLAST of MS022021 vs. NCBI nr
Match: XP_022135709.1 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 [Momordica charantia])

HSP 1 Score: 436.8 bits (1122), Expect = 1.1e-118
Identity = 221/224 (98.66%), Postives = 223/224 (99.55%), Query Frame = 0 

Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSD 60
           MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSD
Sbjct: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSD 60

Query: 61  CCYLSGVGRARLFSVDVVRMPTIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120
           CCYLSGVGRARLFSVDVVRM TIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD
Sbjct: 61  CCYLSGVGRARLFSVDVVRMATIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV 225
           YTTYLDAFGPEENYLRKKVET+LGTKMIYLK+RCSGLGSEWGKV
Sbjct: 181 YTTYLDAFGPEENYLRKKVETDLGTKMIYLKIRCSGLGSEWGKV 224

[Close]
BLAST of MS022021 vs. NCBI nr
Match: XP_022144354.1 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 [Momordica charantia])

HSP 1 Score: 415.2 bits (1066), Expect = 3.5e-112
Identity = 211/224 (94.20%), Postives = 216/224 (96.43%), Query Frame = 0 

Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSD 60
           MEKM+ILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARS F+LSSHRSS+SD  QRVSSD
Sbjct: 1   MEKMMILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSD 60

Query: 61  CCYLSGVGRARLFSVDVVRMPTIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120
           C Y SGVGR R FSVDVV MPTIEDSKLQNVFKDLMATSWDELPNS+VYDVKAALSGSTD
Sbjct: 61  CGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           DKAGKEVVENVFRAAEAVEEFGGILI+LKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV 225
           YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV
Sbjct: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV 224

[Close]
BLAST of MS022021 vs. NCBI nr
Match: XP_022135710.1 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 [Momordica charantia])

HSP 1 Score: 410.2 bits (1053), Expect = 1.1e-110
Identity = 213/224 (95.09%), Postives = 215/224 (95.98%), Query Frame = 0 

Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSD 60
           MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSS 
Sbjct: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSS- 60

Query: 61  CCYLSGVGRARLFSVDVVRMPTIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120
                  GRARLFSVDVVRM TIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD
Sbjct: 61  -------GRARLFSVDVVRMATIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV 225
           YTTYLDAFGPEENYLRKKVET+LGTKMIYLK+RCSGLGSEWGKV
Sbjct: 181 YTTYLDAFGPEENYLRKKVETDLGTKMIYLKIRCSGLGSEWGKV 216

[Close]
BLAST of MS022021 vs. NCBI nr
Match: XP_022144355.1 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 [Momordica charantia])

HSP 1 Score: 396.0 bits (1016), Expect = 2.2e-106
Identity = 205/224 (91.52%), Postives = 210/224 (93.75%), Query Frame = 0 

Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSD 60
           MEKM+ILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARS F+LSSHRSS+SD  QRVSS 
Sbjct: 1   MEKMMILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSS- 60

Query: 61  CCYLSGVGRARLFSVDVVRMPTIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120
                  GR R FSVDVV MPTIEDSKLQNVFKDLMATSWDELPNS+VYDVKAALSGSTD
Sbjct: 61  -------GRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           DKAGKEVVENVFRAAEAVEEFGGILI+LKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV 225
           YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV
Sbjct: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV 216

[Close]
BLAST of MS022021 vs. NCBI nr
Match: XP_038884886.1 (succinate dehydrogenase subunit 5, mitochondrial [Benincasa hispida])

HSP 1 Score: 384.4 bits (986), Expect = 6.6e-103
Identity = 193/224 (86.16%), Postives = 206/224 (91.96%), Query Frame = 0 

Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSD 60
           MEKMVILRSLLRSVR  SY +AGV +RNLLQS+HQAARSFFYLSSHRSS SD PQ+VSSD
Sbjct: 1   MEKMVILRSLLRSVRARSYAIAGVTYRNLLQSNHQAARSFFYLSSHRSSFSDSPQKVSSD 60

Query: 61  CCYLSGVGRARLFSVDVVRMPTIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120
           C YLSGVG AR FSVDVV MPTI DS L+N FKDLMA SWD+LP S+VYDVKAAL+GSTD
Sbjct: 61  CGYLSGVGHARFFSVDVVSMPTIGDSNLRNAFKDLMAASWDKLPESLVYDVKAALTGSTD 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           DKAGKE+VENVFRAAEA EEFGGILIS+KM+IDDSIGLSGEDVKP+SDELKNAL TVHDR
Sbjct: 121 DKAGKEIVENVFRAAEAAEEFGGILISMKMEIDDSIGLSGEDVKPVSDELKNALRTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV 225
           Y TYLD+FGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV
Sbjct: 181 YVTYLDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV 224

[Close]
BLAST of MS022021 vs. ExPASy Swiss-Prot
Match: Q9SX77 (Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH5 PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.4e-57
Identity = 121/221 (54.75%), Postives = 151/221 (68.33%), Query Frame = 0 

Query: 15  RVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSDCCYLS--------- 74
           RVGS  + G  H   ++ H    R+   ++ + S + D      S   Y S         
Sbjct: 24  RVGSL-LQGSHH---IEKHLSRHRTLITVAPNASVIGDVQINKGSFISYASVSRDLQYPR 83

Query: 75  --GVGRARLFSVDVVRMPTIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTDDKA 134
             G+G+ R FS DV  MP +EDS + N FKDLMA  W ELP++VV D K A+S +TDDKA
Sbjct: 84  AMGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKA 143

Query: 135 GKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDRYTT 194
           G+E ++NVFRAAEAVEEFGGIL S+KM+IDDSIG+SGE VKPL +++ +AL T + RY  
Sbjct: 144 GQEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAE 203

Query: 195 YLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV 225
           YLD+F PEE YL+KKVE ELGTKMI+LKMRCSGLGSEWGKV
Sbjct: 204 YLDSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKV 240

[Close]
BLAST of MS022021 vs. ExPASy Swiss-Prot
Match: Q0JDA2 (Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH5 PE=1 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.4e-49
Identity = 92/154 (59.74%), Postives = 122/154 (79.22%), Query Frame = 0 

Query: 71  RLFSVDVVRMPTIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTDDKAGKEVVEN 130
           RLFS +   +P I D ++++ FKDLMA SW  LP+S+V + K A S +TDDKAGKE + N
Sbjct: 61  RLFSSNEKHLPAISDPEVESAFKDLMAASWTGLPDSLVIEAKKAASKATDDKAGKEALLN 120

Query: 131 VFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDRYTTYLDAFGP 190
           VFRAAEA EEFGG+L++L+M +DD  G++GE+V PL   +++A+ + + RY  YL++FGP
Sbjct: 121 VFRAAEACEEFGGVLVTLRMALDDLCGITGENVGPLPGYIEDAVKSAYKRYMKYLESFGP 180

Query: 191 EENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV 225
           EENYLRKKVE ELGTKMI+LKMRCSG+GSEWGK+
Sbjct: 181 EENYLRKKVENELGTKMIHLKMRCSGVGSEWGKI 214

[Close]
BLAST of MS022021 vs. ExPASy TrEMBL
Match: A0A6J1C282 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007602 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 5.4e-119
Identity = 221/224 (98.66%), Postives = 223/224 (99.55%), Query Frame = 0 

Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSD 60
           MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSD
Sbjct: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSD 60

Query: 61  CCYLSGVGRARLFSVDVVRMPTIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120
           CCYLSGVGRARLFSVDVVRM TIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD
Sbjct: 61  CCYLSGVGRARLFSVDVVRMATIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV 225
           YTTYLDAFGPEENYLRKKVET+LGTKMIYLK+RCSGLGSEWGKV
Sbjct: 181 YTTYLDAFGPEENYLRKKVETDLGTKMIYLKIRCSGLGSEWGKV 224

[Close]
BLAST of MS022021 vs. ExPASy TrEMBL
Match: A0A6J1CS25 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014059 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.7e-112
Identity = 211/224 (94.20%), Postives = 216/224 (96.43%), Query Frame = 0 

Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSD 60
           MEKM+ILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARS F+LSSHRSS+SD  QRVSSD
Sbjct: 1   MEKMMILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSSD 60

Query: 61  CCYLSGVGRARLFSVDVVRMPTIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120
           C Y SGVGR R FSVDVV MPTIEDSKLQNVFKDLMATSWDELPNS+VYDVKAALSGSTD
Sbjct: 61  CGYPSGVGRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           DKAGKEVVENVFRAAEAVEEFGGILI+LKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV 225
           YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV
Sbjct: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV 224

[Close]
BLAST of MS022021 vs. ExPASy TrEMBL
Match: A0A6J1C1T2 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007602 PE=4 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 5.5e-111
Identity = 213/224 (95.09%), Postives = 215/224 (95.98%), Query Frame = 0 

Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSD 60
           MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSS 
Sbjct: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSS- 60

Query: 61  CCYLSGVGRARLFSVDVVRMPTIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120
                  GRARLFSVDVVRM TIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD
Sbjct: 61  -------GRARLFSVDVVRMATIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV 225
           YTTYLDAFGPEENYLRKKVET+LGTKMIYLK+RCSGLGSEWGKV
Sbjct: 181 YTTYLDAFGPEENYLRKKVETDLGTKMIYLKIRCSGLGSEWGKV 216

[Close]
BLAST of MS022021 vs. ExPASy TrEMBL
Match: A0A6J1CRE2 (succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111014059 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 1.1e-106
Identity = 205/224 (91.52%), Postives = 210/224 (93.75%), Query Frame = 0 

Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSD 60
           MEKM+ILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARS F+LSSHRSS+SD  QRVSS 
Sbjct: 1   MEKMMILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSLFHLSSHRSSVSDSLQRVSS- 60

Query: 61  CCYLSGVGRARLFSVDVVRMPTIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120
                  GR R FSVDVV MPTIEDSKLQNVFKDLMATSWDELPNS+VYDVKAALSGSTD
Sbjct: 61  -------GRVRFFSVDVVHMPTIEDSKLQNVFKDLMATSWDELPNSIVYDVKAALSGSTD 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           DKAGKEVVENVFRAAEAVEEFGGILI+LKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR
Sbjct: 121 DKAGKEVVENVFRAAEAVEEFGGILINLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV 225
           YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV
Sbjct: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV 216

[Close]
BLAST of MS022021 vs. ExPASy TrEMBL
Match: A0A6J1KS18 (succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111495971 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 6.1e-102
Identity = 192/224 (85.71%), Postives = 204/224 (91.07%), Query Frame = 0 

Query: 1   MEKMVILRSLLRSVRVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSD 60
           MEKMV+LRSLLRSVR GSY +AGVRHR+LLQSH+QAAR+F +LSS RSS SD PQRVS D
Sbjct: 1   MEKMVVLRSLLRSVRAGSYSIAGVRHRSLLQSHYQAARNFSHLSSPRSSFSDSPQRVSYD 60

Query: 61  CCYLSGVGRARLFSVDVVRMPTIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTD 120
           C YLSGVG AR FSVDV  MPTIEDSKLQN FKDLMA SWD LP SVVYDVK ALSGST+
Sbjct: 61  CGYLSGVGHARFFSVDVAHMPTIEDSKLQNAFKDLMAASWDNLPESVVYDVKVALSGSTN 120

Query: 121 DKAGKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDR 180
           D+AGKE+VENVFRAAEA EEFGGIL SLKMKIDDSIGLSGEDVKPLSDELKNAL TVHDR
Sbjct: 121 DEAGKEIVENVFRAAEASEEFGGILTSLKMKIDDSIGLSGEDVKPLSDELKNALQTVHDR 180

Query: 181 YTTYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV 225
           YT+YLDAFGPEENYL+KKVETELGTKMI+LKMRCSGLGSEWGKV
Sbjct: 181 YTSYLDAFGPEENYLKKKVETELGTKMIHLKMRCSGLGSEWGKV 224

[Close]
BLAST of MS022021 vs. TAIR 10
Match: AT1G47420.1 (succinate dehydrogenase 5 )

HSP 1 Score: 222.6 bits (566), Expect = 3.1e-58
Identity = 121/221 (54.75%), Postives = 151/221 (68.33%), Query Frame = 0 

Query: 15  RVGSYGVAGVRHRNLLQSHHQAARSFFYLSSHRSSLSDFPQRVSSDCCYLS--------- 74
           RVGS  + G  H   ++ H    R+   ++ + S + D      S   Y S         
Sbjct: 24  RVGSL-LQGSHH---IEKHLSRHRTLITVAPNASVIGDVQINKGSFISYASVSRDLQYPR 83

Query: 75  --GVGRARLFSVDVVRMPTIEDSKLQNVFKDLMATSWDELPNSVVYDVKAALSGSTDDKA 134
             G+G+ R FS DV  MP +EDS + N FKDLMA  W ELP++VV D K A+S +TDDKA
Sbjct: 84  AMGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKA 143

Query: 135 GKEVVENVFRAAEAVEEFGGILISLKMKIDDSIGLSGEDVKPLSDELKNALHTVHDRYTT 194
           G+E ++NVFRAAEAVEEFGGIL S+KM+IDDSIG+SGE VKPL +++ +AL T + RY  
Sbjct: 144 GQEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAE 203

Query: 195 YLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKV 225
           YLD+F PEE YL+KKVE ELGTKMI+LKMRCSGLGSEWGKV
Sbjct: 204 YLDSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKV 240

The following BLAST results are available for this feature:
BLAST of MS022021 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022135709.11.1e-11898.66succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 [Momordica char... [more]
XP_022144354.13.5e-11294.20succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 [Momordica char... [more]
XP_022135710.11.1e-11095.09succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 [Momordica char... [more]
XP_022144355.12.2e-10691.52succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 [Momordica char... [more]
XP_038884886.16.6e-10386.16succinate dehydrogenase subunit 5, mitochondrial [Benincasa hispida][more]
BLAST of MS022021 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SX774.4e-5754.75Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702... [more]
Q0JDA23.4e-4959.74Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica... [more]
BLAST of MS022021 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C2825.4e-11998.66succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 OS=Momordica ch... [more]
A0A6J1CS251.7e-11294.20succinate dehydrogenase subunit 5, mitochondrial-like isoform X1 OS=Momordica ch... [more]
A0A6J1C1T25.5e-11195.09succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 OS=Momordica ch... [more]
A0A6J1CRE21.1e-10691.52succinate dehydrogenase subunit 5, mitochondrial-like isoform X2 OS=Momordica ch... [more]
A0A6J1KS186.1e-10285.71succinate dehydrogenase subunit 5, mitochondrial-like OS=Cucurbita maxima OX=366... [more]
BLAST of MS022021 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G47420.13.1e-5854.75succinate dehydrogenase 5 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025397Succinate dehydrogenase subunit 5, mitochondrialPFAMPF14290DUF4370coord: 1..224
e-value: 1.6E-94
score: 316.2
IPR025397Succinate dehydrogenase subunit 5, mitochondrialPANTHERPTHR36139SUCCINATE DEHYDROGENASE SUBUNIT 5, MITOCHONDRIALcoord: 1..224
NoneNo IPR availablePANTHERPTHR36139:SF1SUCCINATE DEHYDROGENASE SUBUNIT 5, MITOCHONDRIALcoord: 1..224

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS022021.1MS022021.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006099 tricarboxylic acid cycle
cellular_component GO:0045273 respiratory chain complex II