MS021987 (gene) Bitter gourd (TR) v1

Overview
NameMS021987
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold110: 872552 .. 872638 (+)
RNA-Seq ExpressionMS021987
SyntenyMS021987
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATATCAACAAATCAGAGTGGCGCAGCGGAAGCGTGGTGGGCCCATAACCCACAGGTCCCAGGATCGAAACCTGGCTCTGATAAAA

mRNA sequence

TTATATCAACAAATCAGAGTGGCGCAGCGGAAGCGTGGTGGGCCCATAACCCACAGGTCCCAGGATCGAAACCTGGCTCTGATAAAA

Coding sequence (CDS)

TTATATCAACAAATCAGAGTGGCGCAGCGGAAGCGTGGTGGGCCCATAACCCACAGGTCCCAGGATCGAAACCTGGCTCTGATAAAA

Protein sequence

LYQQIRVAQRKRGGPITHRSQDRNLALIK
Homology
BLAST of MS021987 vs. NCBI nr
Match: KGN49890.1 (hypothetical protein Csa_000411 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 3.1e-05
Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 0

Query: 1  LYQQIRVAQRKRGGPITHRSQDRNLALIK 30
          ++QQIRVAQRKRGGPITHRSQDRNLALI+
Sbjct: 1  MFQQIRVAQRKRGGPITHRSQDRNLALIE 29

BLAST of MS021987 vs. NCBI nr
Match: XP_007150631.1 (hypothetical protein PHAVU_005G168400g [Phaseolus vulgaris] >ESW22625.1 hypothetical protein PHAVU_005G168400g [Phaseolus vulgaris])

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0

Query: 4  QIRVAQRKRGGPITHRSQDRNLALIK 30
          QIRVAQRKRGGPITHRSQDRNLALIK
Sbjct: 25 QIRVAQRKRGGPITHRSQDRNLALIK 50

BLAST of MS021987 vs. ExPASy TrEMBL
Match: A0A0A0KJI7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139680 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-05
Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 0

Query: 1  LYQQIRVAQRKRGGPITHRSQDRNLALIK 30
          ++QQIRVAQRKRGGPITHRSQDRNLALI+
Sbjct: 1  MFQQIRVAQRKRGGPITHRSQDRNLALIE 29

BLAST of MS021987 vs. ExPASy TrEMBL
Match: V7BZY9 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G168400g PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.5e-05
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0

Query: 4  QIRVAQRKRGGPITHRSQDRNLALIK 30
          QIRVAQRKRGGPITHRSQDRNLALIK
Sbjct: 25 QIRVAQRKRGGPITHRSQDRNLALIK 50

BLAST of MS021987 vs. ExPASy TrEMBL
Match: A0A1R3G5G8 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_28770 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.4e-04
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0

Query: 4  QIRVAQRKRGGPITHRSQDRNLALIK 30
          + RVAQRKRGGPITHRSQDRNLALIK
Sbjct: 6  EARVAQRKRGGPITHRSQDRNLALIK 31

BLAST of MS021987 vs. ExPASy TrEMBL
Match: A0A7I8KTM8 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_08011795 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.4e-04
Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = 0

Query: 4  QIRVAQRKRGGPITHRSQDRNLALIK 30
          +IRVAQRKRGGPITHRSQDRNLALI+
Sbjct: 26 KIRVAQRKRGGPITHRSQDRNLALIQ 51

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49890.13.1e-0589.66hypothetical protein Csa_000411 [Cucumis sativus][more]
XP_007150631.11.6e-04100.00hypothetical protein PHAVU_005G168400g [Phaseolus vulgaris] >ESW22625.1 hypothet... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KJI71.5e-0589.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139680 PE=4 SV=1[more]
V7BZY97.5e-05100.00Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G168400g PE=4 ... [more]
A0A1R3G5G86.4e-0492.31Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_28770 PE=4 ... [more]
A0A7I8KTM86.4e-0492.31Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_08011795 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..29

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021987.1MS021987.1mRNA