MS021974 (gene) Bitter gourd (TR) v1

Overview
NameMS021974
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpeptidyl-prolyl cis-trans isomerase CYP95 isoform X1
Locationscaffold110: 740124 .. 740237 (-)
RNA-Seq ExpressionMS021974
SyntenyMS021974
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTCGCAATCCCCCAGGAGGACTATCAGAGATAGGTCCAGGTCTCCTTCTGGTAGCCCAGATGGGAAGAAGGGCCTGGTCTCGTATGGCGATGGATCTCCCGATTCAGAGAGG

mRNA sequence

GATTCGCAATCCCCCAGGAGGACTATCAGAGATAGGTCCAGGTCTCCTTCTGGTAGCCCAGATGGGAAGAAGGGCCTGGTCTCGTATGGCGATGGATCTCCCGATTCAGAGAGG

Coding sequence (CDS)

GATTCGCAATCCCCCAGGAGGACTATCAGAGATAGGTCCAGGTCTCCTTCTGGTAGCCCAGATGGGAAGAAGGGCCTGGTCTCGTATGGCGATGGATCTCCCGATTCAGAGAGG

Protein sequence

DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER
Homology
BLAST of MS021974 vs. NCBI nr
Match: XP_022132234.1 (peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Momordica charantia] >XP_022132235.1 peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0

Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER 39
           DSQSPRR IRDRS+SPSGSPDGKKGLVSYGDGSPDSER
Sbjct: 747 DSQSPRRPIRDRSKSPSGSPDGKKGLVSYGDGSPDSER 784

BLAST of MS021974 vs. NCBI nr
Match: XP_022132236.1 (peptidyl-prolyl cis-trans isomerase CYP95 isoform X2 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0

Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER 39
           DSQSPRR IRDRS+SPSGSPDGKKGLVSYGDGSPDSER
Sbjct: 682 DSQSPRRPIRDRSKSPSGSPDGKKGLVSYGDGSPDSER 719

BLAST of MS021974 vs. NCBI nr
Match: XP_022132237.1 (peptidyl-prolyl cis-trans isomerase CYP95 isoform X3 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0

Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER 39
           DSQSPRR IRDRS+SPSGSPDGKKGLVSYGDGSPDSER
Sbjct: 748 DSQSPRRPIRDRSKSPSGSPDGKKGLVSYGDGSPDSER 785

BLAST of MS021974 vs. NCBI nr
Match: XP_038885735.1 (peptidyl-prolyl cis-trans isomerase CYP95 isoform X4 [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 8.0e-09
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0

Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER 39
           DSQSPRRT RD+SRSPSGSP GKKGLVSYGDGSPDSER
Sbjct: 637 DSQSPRRTSRDKSRSPSGSPQGKKGLVSYGDGSPDSER 674

BLAST of MS021974 vs. NCBI nr
Match: XP_038885730.1 (peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Benincasa hispida] >XP_038885731.1 peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 8.0e-09
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0

Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER 39
           DSQSPRRT RD+SRSPSGSP GKKGLVSYGDGSPDSER
Sbjct: 758 DSQSPRRTSRDKSRSPSGSPQGKKGLVSYGDGSPDSER 795

BLAST of MS021974 vs. ExPASy TrEMBL
Match: A0A6J1BRW1 (peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005142 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.8e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0

Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER 39
           DSQSPRR IRDRS+SPSGSPDGKKGLVSYGDGSPDSER
Sbjct: 747 DSQSPRRPIRDRSKSPSGSPDGKKGLVSYGDGSPDSER 784

BLAST of MS021974 vs. ExPASy TrEMBL
Match: A0A6J1BRP7 (peptidyl-prolyl cis-trans isomerase CYP95 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005142 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.8e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0

Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER 39
           DSQSPRR IRDRS+SPSGSPDGKKGLVSYGDGSPDSER
Sbjct: 682 DSQSPRRPIRDRSKSPSGSPDGKKGLVSYGDGSPDSER 719

BLAST of MS021974 vs. ExPASy TrEMBL
Match: A0A6J1BTA6 (peptidyl-prolyl cis-trans isomerase CYP95 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111005142 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.8e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0

Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER 39
           DSQSPRR IRDRS+SPSGSPDGKKGLVSYGDGSPDSER
Sbjct: 748 DSQSPRRPIRDRSKSPSGSPDGKKGLVSYGDGSPDSER 785

BLAST of MS021974 vs. ExPASy TrEMBL
Match: A0A0A0LQ44 (PPIase cyclophilin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G380020 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-08
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER 39
           DSQSPRRT RDRSRSPS SP GKKGLVSYGDGSPDSER
Sbjct: 747 DSQSPRRTSRDRSRSPSASPVGKKGLVSYGDGSPDSER 784

BLAST of MS021974 vs. ExPASy TrEMBL
Match: A0A6J1KB87 (peptidyl-prolyl cis-trans isomerase CYP95-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111491765 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.3e-08
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPD 36
           DSQSPRRT++DRSRSPSGSP+GKKGLVSYGDGSPD
Sbjct: 652 DSQSPRRTLKDRSRSPSGSPEGKKGLVSYGDGSPD 686

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022132234.11.6e-0994.74peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Momordica charantia] >XP_0... [more]
XP_022132236.11.6e-0994.74peptidyl-prolyl cis-trans isomerase CYP95 isoform X2 [Momordica charantia][more]
XP_022132237.11.6e-0994.74peptidyl-prolyl cis-trans isomerase CYP95 isoform X3 [Momordica charantia][more]
XP_038885735.18.0e-0992.11peptidyl-prolyl cis-trans isomerase CYP95 isoform X4 [Benincasa hispida][more]
XP_038885730.18.0e-0992.11peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Benincasa hispida] >XP_038... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BRW17.8e-1094.74peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 OS=Momordica charantia OX=3... [more]
A0A6J1BRP77.8e-1094.74peptidyl-prolyl cis-trans isomerase CYP95 isoform X2 OS=Momordica charantia OX=3... [more]
A0A6J1BTA67.8e-1094.74peptidyl-prolyl cis-trans isomerase CYP95 isoform X3 OS=Momordica charantia OX=3... [more]
A0A0A0LQ441.9e-0892.11PPIase cyclophilin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=... [more]
A0A6J1KB873.3e-0891.43peptidyl-prolyl cis-trans isomerase CYP95-like isoform X3 OS=Cucurbita maxima OX... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021974.1MS021974.1mRNA