MS021958 (gene) Bitter gourd (TR) v1

Overview


Name	MS021958
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ribosomal protein S7
Location	scaffold110: 568178 .. 568381 (+)
RNA-Seq Expression	MS021958
Synteny	MS021958

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCCTGGGATTGTAGTCCGGGATCGTCAACAAACCTTAGCTATTCATATCCTTGAAGCAGCTTTCAAACGACGTATAAGCTACAGGATAATGTTCATTTGCTGAGATACTGGATGCTCAGTGAGGGGAATTGCACATAAGAATAGGGAGAATCTTCATAGACTCGCTTCCACCAATCGAAGTTTCGCACATTTCAGATGGTAC

mRNA sequence

GTCCCTGGGATTGTAGTCCGGGATCGTCAACAAACCTTAGCTATTCATATCCTTGAAGCAGCTTTCAAACGACGTATAAGCTACAGGATATGTTCATTTGCTGAGATACTGGATGCTCAGAGGGGAATTGCACATAAGAATAGGGAGAATCTTCATAGACTCGCTTCCACCAATCGAAGTTTCGCACATTTCAGATGGTAC

Coding sequence (CDS)

GTCCCTGGGATTGTAGTCCGGGATCGTCAACAAACCTTAGCTATTCATATCCTTGAAGCAGCTTTCAAACGACGTATAAGCTACAGGATATGTTCATTTGCTGAGATACTGGATGCTCAGAGGGGAATTGCACATAAGAATAGGGAGAATCTTCATAGACTCGCTTCCACCAATCGAAGTTTCGCACATTTCAGATGGTAC

Protein sequence

VPGIVVRDRQQTLAIHILEAAFKRRISYRICSFAEILDAQRGIAHKNRENLHRLASTNRSFAHFRWY

Homology

[Close]

BLAST of MS021958 vs. NCBI nr
Match: CAB4277236.1 (unnamed protein product [Prunus armeniaca] >CAB4277282.1 unnamed protein product [Prunus armeniaca] >CAB4307645.1 unnamed protein product [Prunus armeniaca] >CAB4307688.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-20
Identity = 61/74 (82.43%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  VPGIVVRDRQQTLAIH-ILEAAFKRRISYRI----CSFAEILDA--QRGIAHKNRENLHR 60
          VPGIV RDRQQTLAI  ILEAAFKRRISYRI    CSFAEILDA  +RGIA K RENLHR
Sbjct: 26 VPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYRKRGIARKKRENLHR 85

Query: 61 LASTNRSFAHFRWY 68
          LASTNRSFAHFRW+
Sbjct: 86 LASTNRSFAHFRWW 99

[Close]

BLAST of MS021958 vs. NCBI nr
Match: BBN69458.1 (Tudor/PWWP/MBT superfamily protein [Prunus dulcis])

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-20
Identity = 61/74 (82.43%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1   VPGIVVRDRQQTLAIH-ILEAAFKRRISYRI----CSFAEILDA--QRGIAHKNRENLHR 60
           VPGIV RDRQQTLAI  ILEAAFKRRISYRI    CSFAEILDA  +RGIA K RENLHR
Sbjct: 75  VPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYRKRGIARKKRENLHR 134

Query: 61  LASTNRSFAHFRWY 68
           LASTNRSFAHFRW+
Sbjct: 135 LASTNRSFAHFRWW 148

[Close]

BLAST of MS021958 vs. NCBI nr
Match: YP_009241662.1 (ribosomal protein S7 [Ziziphus jujuba] >YP_009565404.1 ribosomal protein S7 [Morus notabilis] >YP_009913635.1 ribosomal protein S7 [Luffa acutangula] >QWQ49870.1 ribosomal protein S7 [Zelkova schneideriana] >AMP43645.1 ribosomal protein S7 [Ziziphus jujuba] >QBB08761.1 ribosomal protein S7 [Morus notabilis] >QLJ93024.1 ribosomal protein S7 [Luffa acutangula])

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-20
Identity = 61/74 (82.43%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1   VPGIVVRDRQQTLAIH-ILEAAFKRRISYRI----CSFAEILDA--QRGIAHKNRENLHR 60
           VPGIV RDRQQTLAI  ILEAAFKRRISYRI    CSFAEILDA  +RGIA K RENLHR
Sbjct: 75  VPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYRKRGIARKKRENLHR 134

Query: 61  LASTNRSFAHFRWY 68
           LASTNRSFAHFRW+
Sbjct: 135 LASTNRSFAHFRWW 148

[Close]

BLAST of MS021958 vs. NCBI nr
Match: AEN56109.1 (ribosomal protein S7 [Cucumis melo subsp. melo] >AZP40303.1 ribosomal protein S7 [Cucumis melo var. momordica] >TYK27456.1 ribosomal protein S7 [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-20
Identity = 61/74 (82.43%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1   VPGIVVRDRQQTLAIH-ILEAAFKRRISYRI----CSFAEILDA--QRGIAHKNRENLHR 60
           VPGIV RDRQQTLAI  ILEAAFKRRISYRI    CSFAEILDA  +RGIA K RENLHR
Sbjct: 75  VPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYRKRGIARKKRENLHR 134

Query: 61  LASTNRSFAHFRWY 68
           LASTNRSFAHFRW+
Sbjct: 135 LASTNRSFAHFRWW 148

[Close]

BLAST of MS021958 vs. NCBI nr
Match: KAF3452152.1 (hypothetical protein FNV43_RR08250 [Rhamnella rubrinervis])

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-20
Identity = 61/74 (82.43%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1   VPGIVVRDRQQTLAIH-ILEAAFKRRISYRI----CSFAEILDA--QRGIAHKNRENLHR 60
           VPGIV RDRQQTLAI  ILEAAFKRRISYRI    CSFAEILDA  +RGIA K RENLHR
Sbjct: 56  VPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYRKRGIARKKRENLHR 115

Query: 61  LASTNRSFAHFRWY 68
           LASTNRSFAHFRW+
Sbjct: 116 LASTNRSFAHFRWW 129

[Close]

BLAST of MS021958 vs. ExPASy Swiss-Prot
Match: P92557 (Ribosomal protein S7, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS7 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.4e-21
Identity = 58/74 (78.38%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1   VPGIVVRDRQQTLAIH-ILEAAFKRRISYRI----CSFAEILDA--QRGIAHKNRENLHR 60
           VPGIV RDRQQTLAI  ILEAAFKRRISYRI    CSFAEILDA  +RG A + RENLH 
Sbjct: 75  VPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYQKRGSARRKRENLHG 134

Query: 61  LASTNRSFAHFRWY 68
           LASTNRSFAHFRW+
Sbjct: 135 LASTNRSFAHFRWW 148

[Close]

BLAST of MS021958 vs. ExPASy Swiss-Prot
Match: Q01902 (Ribosomal protein S7, mitochondrial OS=Triticum aestivum OX=4565 GN=RPS7 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.4e-21
Identity = 58/74 (78.38%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1   VPGIVVRDRQQTLAIH-ILEAAFKRRISYRI----CSFAEILDA--QRGIAHKNRENLHR 60
           VPGIV RDRQQTLAI  IL AAFKRRISYRI    CSFAEILDA  +RGI+ K RENLH 
Sbjct: 75  VPGIVARDRQQTLAIRWILGAAFKRRISYRISLEKCSFAEILDAYRKRGISRKRRENLHG 134

Query: 61  LASTNRSFAHFRWY 68
           LASTNRSFAHFRW+
Sbjct: 135 LASTNRSFAHFRWW 148

[Close]

BLAST of MS021958 vs. ExPASy Swiss-Prot
Match: Q9MF82 (Ribosomal protein S7, mitochondrial OS=Beta vulgaris OX=161934 GN=RPS7 PE=2 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 6.3e-20
Identity = 56/74 (75.68%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1   VPGIVVRDRQQTLAIH-ILEAAFKRRISYRI----CSFAEILDA--QRGIAHKNRENLHR 60
           VPGIV RDRQQTLAI  ILEAAFKRRISYRI    C F EILDA  +RGI+ K RENLH 
Sbjct: 75  VPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCLFDEILDAYRKRGISRKKRENLHG 134

Query: 61  LASTNRSFAHFRWY 68
           LAS NRSFAHFRW+
Sbjct: 135 LASANRSFAHFRWW 148

[Close]

BLAST of MS021958 vs. ExPASy Swiss-Prot
Match: P26867 (Ribosomal protein S7, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS7 PE=3 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-11
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 1   VPGIVVRDRQQTLAIH-ILEAAFKRR-----ISYRICSFAEILDAQR--GIAHKNRENLH 60
           VP I+  +RQ+TLAI  +LE+A KRR     IS   C +AEIL+A +  GIA K R++LH
Sbjct: 156 VPSIIATNRQETLAIRWMLESAAKRRMGKKSISLDQCLYAEILEASQKMGIARKKRDDLH 215

Query: 61  RLASTNRSFAHFRWY 68
           +LA  NRSF+H+RW+
Sbjct: 216 KLAEANRSFSHYRWW 230

[Close]

BLAST of MS021958 vs. ExPASy Swiss-Prot
Match: A7IFX7 (30S ribosomal protein S7 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) OX=78245 GN=rpsG PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.0e-06
Identity = 32/70 (45.71%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 1   VPGIVVRDRQQTLAIHILEAAFKRRISYRICS--FAEILDA--QRGIAHKNRENLHRLAS 60
           VP  V  +R+QTLAI  L A+ + R    +     AE+LDA   RG A K RE+ HR+A 
Sbjct: 87  VPVEVRNERRQTLAIRWLIASARARNEKTMVERLSAELLDAANNRGAAVKKREDTHRMAE 146

Query: 61  TNRSFAHFRW 67
            NR+F+H+RW
Sbjct: 147 ANRAFSHYRW 156

[Close]

BLAST of MS021958 vs. ExPASy TrEMBL
Match: A0A6J5XA11 (Ribosomal_S7 domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS26787 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 61/74 (82.43%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  VPGIVVRDRQQTLAIH-ILEAAFKRRISYRI----CSFAEILDA--QRGIAHKNRENLHR 60
          VPGIV RDRQQTLAI  ILEAAFKRRISYRI    CSFAEILDA  +RGIA K RENLHR
Sbjct: 26 VPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYRKRGIARKKRENLHR 85

Query: 61 LASTNRSFAHFRWY 68
          LASTNRSFAHFRW+
Sbjct: 86 LASTNRSFAHFRWW 99

[Close]

BLAST of MS021958 vs. ExPASy TrEMBL
Match: A0A142BZ01 (Ribosomal protein S7 OS=Ziziphus jujuba OX=326968 GN=rps7 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 61/74 (82.43%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1   VPGIVVRDRQQTLAIH-ILEAAFKRRISYRI----CSFAEILDA--QRGIAHKNRENLHR 60
           VPGIV RDRQQTLAI  ILEAAFKRRISYRI    CSFAEILDA  +RGIA K RENLHR
Sbjct: 75  VPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYRKRGIARKKRENLHR 134

Query: 61  LASTNRSFAHFRWY 68
           LASTNRSFAHFRW+
Sbjct: 135 LASTNRSFAHFRWW 148

[Close]

BLAST of MS021958 vs. ExPASy TrEMBL
Match: A0A7D6C7C9 (Ribosomal protein S7 OS=Luffa acutangula OX=56866 GN=rps7 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 61/74 (82.43%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1   VPGIVVRDRQQTLAIH-ILEAAFKRRISYRI----CSFAEILDA--QRGIAHKNRENLHR 60
           VPGIV RDRQQTLAI  ILEAAFKRRISYRI    CSFAEILDA  +RGIA K RENLHR
Sbjct: 75  VPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYRKRGIARKKRENLHR 134

Query: 61  LASTNRSFAHFRWY 68
           LASTNRSFAHFRW+
Sbjct: 135 LASTNRSFAHFRWW 148

[Close]

BLAST of MS021958 vs. ExPASy TrEMBL
Match: A0A5D3DUQ4 (Ribosomal protein S7 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold81675G00010 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 61/74 (82.43%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1   VPGIVVRDRQQTLAIH-ILEAAFKRRISYRI----CSFAEILDA--QRGIAHKNRENLHR 60
           VPGIV RDRQQTLAI  ILEAAFKRRISYRI    CSFAEILDA  +RGIA K RENLHR
Sbjct: 75  VPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYRKRGIARKKRENLHR 134

Query: 61  LASTNRSFAHFRWY 68
           LASTNRSFAHFRW+
Sbjct: 135 LASTNRSFAHFRWW 148

[Close]

BLAST of MS021958 vs. ExPASy TrEMBL
Match: G3EU25 (Ribosomal protein S7 OS=Cucumis melo subsp. melo OX=412675 GN=rps7 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 61/74 (82.43%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1   VPGIVVRDRQQTLAIH-ILEAAFKRRISYRI----CSFAEILDA--QRGIAHKNRENLHR 60
           VPGIV RDRQQTLAI  ILEAAFKRRISYRI    CSFAEILDA  +RGIA K RENLHR
Sbjct: 75  VPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYRKRGIARKKRENLHR 134

Query: 61  LASTNRSFAHFRWY 68
           LASTNRSFAHFRW+
Sbjct: 135 LASTNRSFAHFRWW 148

[Close]

BLAST of MS021958 vs. TAIR 10
Match: AT2G07696.1 (Ribosomal protein S7p/S5e family protein )

HSP 1 Score: 101.7 bits (252), Expect = 2.4e-22
Identity = 58/74 (78.38%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1   VPGIVVRDRQQTLAIH-ILEAAFKRRISYRI----CSFAEILDA--QRGIAHKNRENLHR 60
           VPGIV RDRQQTLAI  ILEAAFKRRISYRI    CSFAEILDA  +RG A + RENLH 
Sbjct: 75  VPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYQKRGSARRKRENLHG 134

Query: 61  LASTNRSFAHFRWY 68
           LASTNRSFAHFRW+
Sbjct: 135 LASTNRSFAHFRWW 148

[Close]

BLAST of MS021958 vs. TAIR 10
Match: ATMG01270.1 (mitochondrial ribosomal protein S7 )

HSP 1 Score: 101.7 bits (252), Expect = 2.4e-22
Identity = 58/74 (78.38%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1   VPGIVVRDRQQTLAIH-ILEAAFKRRISYRI----CSFAEILDA--QRGIAHKNRENLHR 60
           VPGIV RDRQQTLAI  ILEAAFKRRISYRI    CSFAEILDA  +RG A + RENLH 
Sbjct: 75  VPGIVARDRQQTLAIRWILEAAFKRRISYRISLEKCSFAEILDAYQKRGSARRKRENLHG 134

Query: 61  LASTNRSFAHFRWY 68
           LASTNRSFAHFRW+
Sbjct: 135 LASTNRSFAHFRWW 148

The following BLAST results are available for this feature:

BLAST of MS021958 vs. NCBI nr


Match Name	E-value	Identity	Description
CAB4277236.1	3.6e-20	82.43	unnamed protein product [Prunus armeniaca] >CAB4277282.1 unnamed protein product...	[more]
BBN69458.1	3.6e-20	82.43	Tudor/PWWP/MBT superfamily protein [Prunus dulcis]	[more]
YP_009241662.1	3.6e-20	82.43	ribosomal protein S7 [Ziziphus jujuba] >YP_009565404.1 ribosomal protein S7 [Mor...	[more]
AEN56109.1	3.6e-20	82.43	ribosomal protein S7 [Cucumis melo subsp. melo] >AZP40303.1 ribosomal protein S7...	[more]
KAF3452152.1	3.6e-20	82.43	hypothetical protein FNV43_RR08250 [Rhamnella rubrinervis]	[more]

BLAST of MS021958 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92557	3.4e-21	78.38	Ribosomal protein S7, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS7 PE=1...	[more]
Q01902	4.4e-21	78.38	Ribosomal protein S7, mitochondrial OS=Triticum aestivum OX=4565 GN=RPS7 PE=3 SV...	[more]
Q9MF82	6.3e-20	75.68	Ribosomal protein S7, mitochondrial OS=Beta vulgaris OX=161934 GN=RPS7 PE=2 SV=2	[more]
P26867	3.2e-11	52.00	Ribosomal protein S7, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS7 PE=...	[more]
A7IFX7	4.0e-06	45.71	30S ribosomal protein S7 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / P...	[more]

BLAST of MS021958 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J5XA11	1.7e-20	82.43	Ribosomal_S7 domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LO...	[more]
A0A142BZ01	1.7e-20	82.43	Ribosomal protein S7 OS=Ziziphus jujuba OX=326968 GN=rps7 PE=3 SV=1	[more]
A0A7D6C7C9	1.7e-20	82.43	Ribosomal protein S7 OS=Luffa acutangula OX=56866 GN=rps7 PE=3 SV=1	[more]
A0A5D3DUQ4	1.7e-20	82.43	Ribosomal protein S7 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
G3EU25	1.7e-20	82.43	Ribosomal protein S7 OS=Cucumis melo subsp. melo OX=412675 GN=rps7 PE=3 SV=1	[more]

BLAST of MS021958 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07696.1	2.4e-22	78.38	Ribosomal protein S7p/S5e family protein	[more]
ATMG01270.1	2.4e-22	78.38	mitochondrial ribosomal protein S7	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036823	Ribosomal protein S7 domain superfamily	GENE3D	1.10.455.10	Ribosomal protein S7 domain	coord: 1..66 e-value: 2.1E-10 score: 42.3
IPR036823	Ribosomal protein S7 domain superfamily	SUPERFAMILY	47973	Ribosomal protein S7	coord: 1..66
None	No IPR available	PANTHER	PTHR11205:SF46	RIBOSOMAL PROTEIN S7	coord: 1..67
IPR000235	Ribosomal protein S5/S7	PANTHER	PTHR11205	RIBOSOMAL PROTEIN S7	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021958.1	MS021958.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation