MS021949 (gene) Bitter gourd (TR) v1

Overview


Name	MS021949
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic
Location	scaffold110: 527099 .. 527206 (+)
RNA-Seq Expression	MS021949
Synteny	MS021949

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTCTATGGTTCTAGTTGTTGCTTCATCGAATTTGCTTGTTCACGATTTGACTTTGATCGTTATAGACCAATACCAAGATCTAGTCCTAGACAGACATGCTTAATT

mRNA sequence

CTTCTCTATGGTTCTAGTTGTTGCTTCATCGAATTTGCTTGTTCACGATTTGACTTTGATCGTTATAGACCAATACCAAGATCTAGTCCTAGACAGACATGCTTAATT

Coding sequence (CDS)

CTTCTCTATGGTTCTAGTTGTTGCTTCATCGAATTTGCTTGTTCACGATTTGACTTTGATCGTTATAGACCAATACCAAGATCTAGTCCTAGACAGACATGCTTAATT

Protein sequence

LLYGSSCCFIEFACSRFDFDRYRPIPRSSPRQTCLI

Homology

[Close]

BLAST of MS021949 vs. NCBI nr
Match: YP_009258725.1 (27 kDa subunit of NADH-ubiquinone oxidoreductase [Cylindrocystis brebissonii] >ANI25847.1 27 kDa subunit of NADH-ubiquinone oxidoreductase [Cylindrocystis brebissonii])

HSP 1 Score: 62.8 bits (151), Expect = 7.1e-07
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  LLYGSSCCFIEFAC---SRFDFDRYRPIPRSSPRQTCLI 37
          LLYG+SCCFIEFAC   SRFDFDRY  +PRSSPRQ  LI
Sbjct: 41 LLYGTSCCFIEFACLIGSRFDFDRYGLVPRSSPRQADLI 79

[Close]

BLAST of MS021949 vs. NCBI nr
Match: QKQ14607.1 (27 kDa subunit of NADH-ubiquinone [Zygnema circumcarinatum])

HSP 1 Score: 62.8 bits (151), Expect = 7.1e-07
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  LLYGSSCCFIEFAC---SRFDFDRYRPIPRSSPRQTCLI 37
          LLYG+SCCFIEFAC   SRFDFDRY  +PRSSPRQ  LI
Sbjct: 41 LLYGTSCCFIEFACLIGSRFDFDRYGLVPRSSPRQADLI 79

[Close]

BLAST of MS021949 vs. NCBI nr
Match: YP_009258368.1 (27 kDa subunit of NADH-ubiquinone oxidoreductase [Spirogyra maxima] >ANI25277.1 27 kDa subunit of NADH-ubiquinone oxidoreductase [Spirogyra maxima])

HSP 1 Score: 62.8 bits (151), Expect = 7.1e-07
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1   LLYGSSCCFIEFAC---SRFDFDRYRPIPRSSPRQTCLI 37
           LLYG+SCCFIEFAC   SRFDFDRY  +PRSSPRQ  LI
Sbjct: 69  LLYGTSCCFIEFACLLGSRFDFDRYGLVPRSSPRQADLI 107

[Close]

BLAST of MS021949 vs. NCBI nr
Match: KAF3772306.1 (NAD(P)H-quinone oxidoreductase subunit K [Nymphaea thermarum])

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-06
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  LLYGSSCCFIEFAC---SRFDFDRYRPIPRSSPRQTCLI 37
          LLYG+SCCFIEFA    SRFDFDRYR +PRSSPRQ  LI
Sbjct: 37 LLYGTSCCFIEFASLIGSRFDFDRYRLVPRSSPRQADLI 75

[Close]

BLAST of MS021949 vs. NCBI nr
Match: TYI05631.1 (hypothetical protein ES332_A10G102700v1 [Gossypium tomentosum])

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-06
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  LLYGSSCCFIEFAC---SRFDFDRYRPIPRSSPRQTCLI 37
          LLYG+SCCFIEFA    SRFDFDRYR +PRSSPRQ  LI
Sbjct: 37 LLYGTSCCFIEFASLIGSRFDFDRYRLVPRSSPRQADLI 75

[Close]

BLAST of MS021949 vs. ExPASy Swiss-Prot
Match: Q9TKY0 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Nephroselmis olivacea OX=31312 GN=ndhK PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-09
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  LLYGSSCCFIEFAC---SRFDFDRYRPIPRSSPRQTCLI 37
          LLYG+SCCFIEFAC   SRFDFDR+  +PRSSPRQ  LI
Sbjct: 49 LLYGTSCCFIEFACLIGSRFDFDRFGLVPRSSPRQADLI 87

[Close]

BLAST of MS021949 vs. ExPASy Swiss-Prot
Match: Q8M9X9 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Chaetosphaeridium globosum OX=96477 GN=ndhK PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-08
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 1  LLYGSSCCFIEFAC---SRFDFDRYRPIPRSSPRQTCLI 37
          LLYG+SCCFIEFA    SRFDFDRY  +PRSSPRQ  LI
Sbjct: 58 LLYGTSCCFIEFAALIGSRFDFDRYGLVPRSSPRQADLI 96

[Close]

BLAST of MS021949 vs. ExPASy Swiss-Prot
Match: A9L9A0 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Lemna minor OX=4472 GN=ndhK PE=3 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-08
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 1  LLYGSSCCFIEFAC---SRFDFDRYRPIPRSSPRQTCLI 37
          LLYG+SCCFIEFA    SRFDFDRY  +PRSSPRQ  LI
Sbjct: 37 LLYGTSCCFIEFAALIGSRFDFDRYGLVPRSSPRQADLI 75

[Close]

BLAST of MS021949 vs. ExPASy Swiss-Prot
Match: Q9MUR0 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Mesostigma viride OX=41882 GN=ndhK PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-08
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 1  LLYGSSCCFIEFAC---SRFDFDRYRPIPRSSPRQTCLI 37
          LLYG+SCCFIEFAC   SRFDFDR+  +PR SPRQ  LI
Sbjct: 58 LLYGTSCCFIEFACLLGSRFDFDRFGLVPRCSPRQADLI 96

[Close]

BLAST of MS021949 vs. ExPASy Swiss-Prot
Match: Q2MII3 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Solanum bulbocastanum OX=147425 GN=ndhK PE=3 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-08
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  LLYGSSCCFIEFAC---SRFDFDRYRPIPRSSPRQTCLI 37
          LLYG+SCCFIEFA    SRFDFDRY  +PRSSPRQ+ LI
Sbjct: 37 LLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQSDLI 75

[Close]

BLAST of MS021949 vs. ExPASy TrEMBL
Match: A0A191T4G1 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Spirogyra maxima OX=3180 GN=ndhK PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1   LLYGSSCCFIEFAC---SRFDFDRYRPIPRSSPRQTCLI 37
           LLYG+SCCFIEFAC   SRFDFDRY  +PRSSPRQ  LI
Sbjct: 69  LLYGTSCCFIEFACLLGSRFDFDRYGLVPRSSPRQADLI 107

[Close]

BLAST of MS021949 vs. ExPASy TrEMBL
Match: A0A191T645 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Cylindrocystis brebissonii OX=102167 GN=ndhK PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  LLYGSSCCFIEFAC---SRFDFDRYRPIPRSSPRQTCLI 37
          LLYG+SCCFIEFAC   SRFDFDRY  +PRSSPRQ  LI
Sbjct: 41 LLYGTSCCFIEFACLIGSRFDFDRYGLVPRSSPRQADLI 79

[Close]

BLAST of MS021949 vs. ExPASy TrEMBL
Match: A0A6N0GXA0 (NADH-quinone oxidoreductase subunit B OS=Zygnema circumcarinatum OX=35869 GN=ndhK PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  LLYGSSCCFIEFAC---SRFDFDRYRPIPRSSPRQTCLI 37
          LLYG+SCCFIEFAC   SRFDFDRY  +PRSSPRQ  LI
Sbjct: 41 LLYGTSCCFIEFACLIGSRFDFDRYGLVPRSSPRQADLI 79

[Close]

BLAST of MS021949 vs. ExPASy TrEMBL
Match: A0A5D2NN84 (Oxidored_q6 domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_A10G102700v1 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.7e-07
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  LLYGSSCCFIEFAC---SRFDFDRYRPIPRSSPRQTCLI 37
          LLYG+SCCFIEFA    SRFDFDRYR +PRSSPRQ  LI
Sbjct: 37 LLYGTSCCFIEFASLIGSRFDFDRYRLVPRSSPRQADLI 75

[Close]

BLAST of MS021949 vs. ExPASy TrEMBL
Match: A0A088CKB8 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Nephroselmis astigmatica OX=259378 GN=ndhK PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-06
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  LLYGSSCCFIEFAC---SRFDFDRYRPIPRSSPRQTCLI 37
          LLYG+SCCFIEFAC   SRFDFDR+  +PRSSPRQ  LI
Sbjct: 61 LLYGTSCCFIEFACLIGSRFDFDRFGLVPRSSPRQADLI 99

[Close]

BLAST of MS021949 vs. TAIR 10
Match: ATCG00430.1 (photosystem II reaction center protein G )

HSP 1 Score: 58.9 bits (141), Expect = 9.6e-10
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 1  LLYGSSCCFIEFAC---SRFDFDRYRPIPRSSPRQTCLI 37
          LLYG+SCCFIEFA    SRFDFDRY  +PRSSPRQ  LI
Sbjct: 37 LLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLI 75

The following BLAST results are available for this feature:

BLAST of MS021949 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009258725.1	7.1e-07	76.92	27 kDa subunit of NADH-ubiquinone oxidoreductase [Cylindrocystis brebissonii] >A...	[more]
QKQ14607.1	7.1e-07	76.92	27 kDa subunit of NADH-ubiquinone [Zygnema circumcarinatum]	[more]
YP_009258368.1	7.1e-07	76.92	27 kDa subunit of NADH-ubiquinone oxidoreductase [Spirogyra maxima] >ANI25277.1 ...	[more]
KAF3772306.1	1.6e-06	76.92	NAD(P)H-quinone oxidoreductase subunit K [Nymphaea thermarum]	[more]
TYI05631.1	1.6e-06	76.92	hypothetical protein ES332_A10G102700v1 [Gossypium tomentosum]	[more]

BLAST of MS021949 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9TKY0	2.7e-09	74.36	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Nephroselmis olivacea...	[more]
Q8M9X9	1.0e-08	74.36	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Chaetosphaeridium glo...	[more]
A9L9A0	1.0e-08	74.36	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Lemna minor OX=4472 G...	[more]
Q9MUR0	1.0e-08	71.79	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Mesostigma viride OX=...	[more]
Q2MII3	1.0e-08	74.36	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Solanum bulbocastanum...	[more]

BLAST of MS021949 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A191T4G1	3.4e-07	76.92	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Spirogyra maxima OX=3...	[more]
A0A191T645	3.4e-07	76.92	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Cylindrocystis brebis...	[more]
A0A6N0GXA0	3.4e-07	76.92	NADH-quinone oxidoreductase subunit B OS=Zygnema circumcarinatum OX=35869 GN=ndh...	[more]
A0A5D2NN84	7.7e-07	76.92	Oxidored_q6 domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_...	[more]
A0A088CKB8	1.0e-06	74.36	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Nephroselmis astigmat...	[more]

BLAST of MS021949 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00430.1	9.6e-10	74.36	photosystem II reaction center protein G	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021949.1	MS021949.1	mRNA