MS021936 (gene) Bitter gourd (TR) v1

Overview


Name	MS021936
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem I reaction center subunit IV
Location	scaffold110: 353400 .. 354494 (+)
RNA-Seq Expression	MS021936
Synteny	MS021936

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGCCATGGCTGCCACTAATCTTTCATGCATTGCTTCTGGAGTTGTGATCCCTTCTTCAGCCACCATATCATCTTCTTCTAGGTTAACTTCTGTGGCCTTCTTCCCCAAGAATCCCAACCCCATTTCTAGAAGATTGGTTATCCGTGCTGCCGCCGATGAAGCCGCTCCCCCGCCGCCTGCTGCCGCCGCCACCGCCGATGCCCCGGTTGAGGAGGCTAAGCCTAAGCCTGCCCCAATTGGCCCCAAGAGAGGTGCCAAGGTATGAATCGTAGATCTAGTTAAAATTGAATAGAGATGGCAAGTTACGATATTTATCTAAGTTTAGAGTTGATGAAATTGACAGGAAAATTGATACTGGTAGAAATTGAATTTTTCCAAAAAAAAAATAAAAATAATAATAAATGATTAGCTCAAATGAAGGAGTAATTTATTTTGTGCCCTTTTATTAAGTTAAGTTATTGTTGATGTTTGATTCTCTTTGAAATCTTATCATTTATTTGAACAGGTGAAGATTCTAAGGAAAGAGTCCTACTGGTACAAAGATGTTGGGTCTGTTGTAACAGTTGATCAGGTTAGACACTTGATAATTTATTCATTTATGAATTCTTTTTTTTTTTTTTTTCATTCTTTCAATTAGTGAGATTTCACACACGCAAAACCAAGTCGCTATCATTATTTTTACTGTTTTTAGTATCGAGTAAAATTTGATTCATAGAATCAACAGGAGATTATCTACTGCTGTTAGACCTTCCACACTAATACAAGTTAAGGATGAATAAACCACCGCCAACCCAAAAGTTTAAGTTGATATTTGCGTATGATGTTTAATTTGACTCTTAAGTTGACGTAAAGAAATTTAAACACAAGATGAGCTCTCTAACATTTAAATTGTTTATGTTGGAACAAATTTGGTGGTATTGGTAATTATTTTGTAAAATAATTTGGAAAAAATGTATGTACTAATGTCTAAGGTGTAAACGATATTTTGCAGGACCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGGTTGAAGAAGTTGCT

mRNA sequence

TTAGCCATGGCTGCCACTAATCTTTCATGCATTGCTTCTGGAGTTGTGATCCCTTCTTCAGCCACCATATCATCTTCTTCTAGGTTAACTTCTGTGGCCTTCTTCCCCAAGAATCCCAACCCCATTTCTAGAAGATTGGTTATCCGTGCTGCCGCCGATGAAGCCGCTCCCCCGCCGCCTGCTGCCGCCGCCACCGCCGATGCCCCGGTTGAGGAGGCTAAGCCTAAGCCTGCCCCAATTGGCCCCAAGAGAGGTGCCAAGGTGAAGATTCTAAGGAAAGAGTCCTACTGGTACAAAGATGTTGGGTCTGTTGTAACAGTTGATCAGGACCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGGTTGAAGAAGTTGCT

Coding sequence (CDS)

TTAGCCATGGCTGCCACTAATCTTTCATGCATTGCTTCTGGAGTTGTGATCCCTTCTTCAGCCACCATATCATCTTCTTCTAGGTTAACTTCTGTGGCCTTCTTCCCCAAGAATCCCAACCCCATTTCTAGAAGATTGGTTATCCGTGCTGCCGCCGATGAAGCCGCTCCCCCGCCGCCTGCTGCCGCCGCCACCGCCGATGCCCCGGTTGAGGAGGCTAAGCCTAAGCCTGCCCCAATTGGCCCCAAGAGAGGTGCCAAGGTGAAGATTCTAAGGAAAGAGTCCTACTGGTACAAAGATGTTGGGTCTGTTGTAACAGTTGATCAGGACCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGGTTGAAGAAGTTGCT

Protein sequence

LAMAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA

Homology

[Close]

BLAST of MS021936 vs. NCBI nr
Match: XP_022144405.1 (photosystem I reaction center subunit IV, chloroplastic-like [Momordica charantia])

HSP 1 Score: 262.3 bits (669), Expect = 2.4e-66
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 3   MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAA 62
           MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAA
Sbjct: 1   MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAA 60

Query: 63  AATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFN 122
           AATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFN
Sbjct: 61  AATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFN 120

Query: 123 KVNYASVSTNNYALDEVEEVA 144
           KVNYASVSTNNYALDEVEEVA
Sbjct: 121 KVNYASVSTNNYALDEVEEVA 141

[Close]

BLAST of MS021936 vs. NCBI nr
Match: XP_023536804.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.4 bits (581), Expect = 3.9e-56
Identity = 126/143 (88.11%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 3   MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPP 62
           MAA+NLSCIASGV+IPSS TISSSSR +SVAFFPKN   ISR  RLV+RAAADEAA PPP
Sbjct: 1   MAASNLSCIASGVIIPSSPTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60

Query: 63  AAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR 122
           AAAATADAP E  KPKPAPIGPKRG KVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPAEAPKPKPAPIGPKRGTKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 123 FNKVNYASVSTNNYALDEVEEVA 144
           FNKVNYASVSTNNYALDE+EEVA
Sbjct: 121 FNKVNYASVSTNNYALDEIEEVA 143

[Close]

BLAST of MS021936 vs. NCBI nr
Match: XP_022937722.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata] >KAG6586174.1 Photosystem I reaction center subunit IV, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021006.1 Photosystem I reaction center subunit IV, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 227.6 bits (579), Expect = 6.6e-56
Identity = 125/143 (87.41%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 3   MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPP 62
           MAA+NLSCIASGV+IPSS TISSSSR +SVAFFPKN   ISR  RLV+RAAADEAA PPP
Sbjct: 1   MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60

Query: 63  AAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR 122
           AAAATADAP E  KPKPAPIGPKRG KVKILR+ESYWYKDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 123 FNKVNYASVSTNNYALDEVEEVA 144
           FNKVNYASVSTNNYALDE+EEVA
Sbjct: 121 FNKVNYASVSTNNYALDEIEEVA 143

[Close]

BLAST of MS021936 vs. NCBI nr
Match: XP_022965997.1 (photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 226.9 bits (577), Expect = 1.1e-55
Identity = 125/143 (87.41%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 3   MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPP 62
           MAA+NLSCIASGV+IPSS TISSSSR +SVAFFPKN   ISR  RLV+RAAADEAA PPP
Sbjct: 1   MAASNLSCIASGVIIPSSPTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60

Query: 63  AAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR 122
           AAAATADAP E  KPKPAPIGPKRG KVKILR+ESYWYKDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPAEVPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 123 FNKVNYASVSTNNYALDEVEEVA 144
           FNKVNYASVSTNNYALDE+EEVA
Sbjct: 121 FNKVNYASVSTNNYALDEIEEVA 143

[Close]

BLAST of MS021936 vs. NCBI nr
Match: XP_008441802.1 (PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis melo])

HSP 1 Score: 219.9 bits (559), Expect = 1.4e-53
Identity = 129/147 (87.76%), Postives = 134/147 (91.16%), Query Frame = 0


Query: 1   LAMAATNLSCIASGVVIPSSATI-SSSSRLTSVAFFPKNPNPISR--RLVIRAAA-DEAA 60
           +AMAA+NLSCIASGVVIPSS TI SSSSRL+S+AFFPKN N ISR  RLVIRAAA DEAA
Sbjct: 1   MAMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAA 60

Query: 61  PPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYP 120
           PPPPAAA  A A  EE KPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYP
Sbjct: 61  PPPPAAAPAA-ATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYP 120

Query: 121 VVVRFNKVNYASVSTNNYALDEVEEVA 144
           VVVRFNKVNYASVSTNNYALDE+EEVA
Sbjct: 121 VVVRFNKVNYASVSTNNYALDEIEEVA 146

[Close]

BLAST of MS021936 vs. ExPASy Swiss-Prot
Match: Q41228 (Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEA PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.7e-35
Identity = 91/143 (63.64%), Postives = 108/143 (75.52%), Query Frame = 0


Query: 3   MAATNLSCIASG--VVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPP 62
           MA+ N++  AS   V  P+ A+ +++SR T + F  KN    + RLV+R AA+EAAPP  
Sbjct: 1   MASCNMASAASNFLVATPNVASNTNTSRTTMLFFSSKNYGSTAPRLVVR-AAEEAAPPAA 60

Query: 63  AAAA-TADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVV 122
           AA A  A+APV+ A  KP PIGPKRG KV+ILRKESYWYK  GSVV  DQDPNTRYPVVV
Sbjct: 61  AATAEPAEAPVKAA--KPPPIGPKRGTKVRILRKESYWYKGTGSVVACDQDPNTRYPVVV 120

Query: 123 RFNKVNYASVSTNNYALDEVEEV 143
           RFNKVNYA+VSTNNYALDE+EEV
Sbjct: 121 RFNKVNYANVSTNNYALDEIEEV 140

[Close]

BLAST of MS021936 vs. ExPASy Swiss-Prot
Match: Q41229 (Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=PSAEB PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.5e-34
Identity = 91/145 (62.76%), Postives = 110/145 (75.86%), Query Frame = 0


Query: 3   MAATNLSCIASG--VVIPSSATISSSSRLTSVAFFPKNPNPISR---RLVIRAAADEAAP 62
           MA+++++  ASG  V  P+ AT +++ R TS+ FF  + N  +    RLV+R AA+EAAP
Sbjct: 1   MASSSMASAASGFMVATPNIATSNTAPR-TSMLFFSSSKNNTTTNFPRLVVR-AAEEAAP 60

Query: 63  PPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPV 122
           P   A A  +AP  +A  KP PIGPKRG KV++LRKESYWYK VGSVV VDQDPNTRYPV
Sbjct: 61  PAATATAEGEAPPAKA-AKPPPIGPKRGTKVRVLRKESYWYKGVGSVVAVDQDPNTRYPV 120

Query: 123 VVRFNKVNYASVSTNNYALDEVEEV 143
           VVRFNKVNYA+VSTNNYALDEVEEV
Sbjct: 121 VVRFNKVNYANVSTNNYALDEVEEV 142

[Close]

BLAST of MS021936 vs. ExPASy Swiss-Prot
Match: P12354 (Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAE-1 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-31
Identity = 75/104 (72.12%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 40  NPISRRLVIRAAADEAAPPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYK 99
           +P S RLV+R AA+EAA  P AA+   +AP  +A  KP PIGPKRG+KV+I+RKESYWYK
Sbjct: 25  SPRSTRLVVR-AAEEAAAAPAAASPEGEAP--KAAAKPPPIGPKRGSKVRIMRKESYWYK 84

Query: 100 DVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEVEEVA 144
            VGSVV VDQDP TRYPVVVRFNKVNYA+VSTNNYALDE++EVA
Sbjct: 85  GVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEVA 125

[Close]

BLAST of MS021936 vs. ExPASy Swiss-Prot
Match: Q9S831 (Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAE1 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-31
Identity = 86/151 (56.95%), Postives = 105/151 (69.54%), Query Frame = 0


Query: 3   MAATNLSCIASGVVIPSSAT--ISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPP 62
           MA T  S +    V+P++ T    +SS  +SV+F P        RLV+RAA D    P P
Sbjct: 1   MAMTTASTV---FVLPANVTSVAGASSSRSSVSFLPM--RNAGSRLVVRAAED----PAP 60

Query: 63  AAAATADAPVEEA--------KPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPN 122
           A++++ D+P   A        KPKP PIGPKRG+KVKILR+ESYW+K+VGSVV VDQDP 
Sbjct: 61  ASSSSKDSPAAAAAPDGATATKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPK 120

Query: 123 TRYPVVVRFNKVNYASVSTNNYALDEVEEVA 144
           TRYPVVVRF KVNYA++STNNYALDEVEEVA
Sbjct: 121 TRYPVVVRFAKVNYANISTNNYALDEVEEVA 142

[Close]

BLAST of MS021936 vs. ExPASy Swiss-Prot
Match: Q9S714 (Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAE2 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-30
Identity = 87/149 (58.39%), Postives = 99/149 (66.44%), Query Frame = 0


Query: 1   LAMAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPP 60
           +  AAT     A+   +P++    SS   T V+F P        RLV+RAA D   PP  
Sbjct: 3   MTSAATGFILTAN---VPAAIGGGSSKSTTIVSFLPM--RSFGSRLVVRAAED--TPPAT 62

Query: 61  AA-------AATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNT 120
           A+       AA A A V  AK KP PIGPKRG+KVKILRKESYWYK+VGSVV VDQDP T
Sbjct: 63  ASSDSSSTTAAAAPAKVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQDPKT 122

Query: 121 RYPVVVRFNKVNYASVSTNNYALDEVEEV 143
           RYPVVVRF KVNYA++STNNYALDEVEEV
Sbjct: 123 RYPVVVRFAKVNYANISTNNYALDEVEEV 144

[Close]

BLAST of MS021936 vs. ExPASy TrEMBL
Match: A0A6J1CRI6 (photosystem I reaction center subunit IV, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111014100 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.2e-66
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 3   MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAA 62
           MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAA
Sbjct: 1   MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPPAA 60

Query: 63  AATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFN 122
           AATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFN
Sbjct: 61  AATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVRFN 120

Query: 123 KVNYASVSTNNYALDEVEEVA 144
           KVNYASVSTNNYALDEVEEVA
Sbjct: 121 KVNYASVSTNNYALDEVEEVA 141

[Close]

BLAST of MS021936 vs. ExPASy TrEMBL
Match: A0A6J1FC09 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111444038 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.2e-56
Identity = 125/143 (87.41%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 3   MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPP 62
           MAA+NLSCIASGV+IPSS TISSSSR +SVAFFPKN   ISR  RLV+RAAADEAA PPP
Sbjct: 1   MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60

Query: 63  AAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR 122
           AAAATADAP E  KPKPAPIGPKRG KVKILR+ESYWYKDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPAEAPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 123 FNKVNYASVSTNNYALDEVEEVA 144
           FNKVNYASVSTNNYALDE+EEVA
Sbjct: 121 FNKVNYASVSTNNYALDEIEEVA 143

[Close]

BLAST of MS021936 vs. ExPASy TrEMBL
Match: A0A6J1HLT8 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111465716 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.5e-56
Identity = 125/143 (87.41%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 3   MAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAPPPP 62
           MAA+NLSCIASGV+IPSS TISSSSR +SVAFFPKN   ISR  RLV+RAAADEAA PPP
Sbjct: 1   MAASNLSCIASGVIIPSSPTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPP 60

Query: 63  AAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPVVVR 122
           AAAATADAP E  KPKPAPIGPKRG KVKILR+ESYWYKDVGSVVTVDQDPNTRYPVVVR
Sbjct: 61  AAAATADAPAEVPKPKPAPIGPKRGTKVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVR 120

Query: 123 FNKVNYASVSTNNYALDEVEEVA 144
           FNKVNYASVSTNNYALDE+EEVA
Sbjct: 121 FNKVNYASVSTNNYALDEIEEVA 143

[Close]

BLAST of MS021936 vs. ExPASy TrEMBL
Match: A0A1S3B3T3 (photosystem I reaction center subunit IV, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103485855 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.7e-54
Identity = 129/147 (87.76%), Postives = 134/147 (91.16%), Query Frame = 0


Query: 1   LAMAATNLSCIASGVVIPSSATI-SSSSRLTSVAFFPKNPNPISR--RLVIRAAA-DEAA 60
           +AMAA+NLSCIASGVVIPSS TI SSSSRL+S+AFFPKN N ISR  RLVIRAAA DEAA
Sbjct: 1   MAMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIRAAASDEAA 60

Query: 61  PPPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYP 120
           PPPPAAA  A A  EE KPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYP
Sbjct: 61  PPPPAAAPAA-ATAEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYP 120

Query: 121 VVVRFNKVNYASVSTNNYALDEVEEVA 144
           VVVRFNKVNYASVSTNNYALDE+EEVA
Sbjct: 121 VVVRFNKVNYASVSTNNYALDEIEEVA 146

[Close]

BLAST of MS021936 vs. ExPASy TrEMBL
Match: A0A0A0LJQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079660 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 4.8e-52
Identity = 125/146 (85.62%), Postives = 132/146 (90.41%), Query Frame = 0


Query: 1   LAMAATNLSCIASGVVIPSSATI-SSSSRLTSVAFFPKNPNPISR--RLVIRAAADEAAP 60
           +AMAA+NLSCIASGVVIPSS TI SSSSRL+S+AFFPKN N ISR  RLVIR A+DEAAP
Sbjct: 77  MAMAASNLSCIASGVVIPSSTTISSSSSRLSSLAFFPKNSNSISRSSRLVIR-ASDEAAP 136

Query: 61  PPPAAAATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPV 120
           PP A A TA A  EE KPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPV
Sbjct: 137 PPAATAPTA-ATTEEPKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNTRYPV 196

Query: 121 VVRFNKVNYASVSTNNYALDEVEEVA 144
           VVRFNKVNYASVSTNNYALDE++EVA
Sbjct: 197 VVRFNKVNYASVSTNNYALDEIQEVA 220

[Close]

BLAST of MS021936 vs. TAIR 10
Match: AT4G28750.1 (Photosystem I reaction centre subunit IV / PsaE protein )

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-32
Identity = 86/151 (56.95%), Postives = 105/151 (69.54%), Query Frame = 0


Query: 3   MAATNLSCIASGVVIPSSAT--ISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPP 62
           MA T  S +    V+P++ T    +SS  +SV+F P        RLV+RAA D    P P
Sbjct: 1   MAMTTASTV---FVLPANVTSVAGASSSRSSVSFLPM--RNAGSRLVVRAAED----PAP 60

Query: 63  AAAATADAPVEEA--------KPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPN 122
           A++++ D+P   A        KPKP PIGPKRG+KVKILR+ESYW+K+VGSVV VDQDP 
Sbjct: 61  ASSSSKDSPAAAAAPDGATATKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPK 120

Query: 123 TRYPVVVRFNKVNYASVSTNNYALDEVEEVA 144
           TRYPVVVRF KVNYA++STNNYALDEVEEVA
Sbjct: 121 TRYPVVVRFAKVNYANISTNNYALDEVEEVA 142

[Close]

BLAST of MS021936 vs. TAIR 10
Match: AT2G20260.1 (photosystem I subunit E-2 )

HSP 1 Score: 133.3 bits (334), Expect = 1.6e-31
Identity = 87/149 (58.39%), Postives = 99/149 (66.44%), Query Frame = 0


Query: 1   LAMAATNLSCIASGVVIPSSATISSSSRLTSVAFFPKNPNPISRRLVIRAAADEAAPPPP 60
           +  AAT     A+   +P++    SS   T V+F P        RLV+RAA D   PP  
Sbjct: 3   MTSAATGFILTAN---VPAAIGGGSSKSTTIVSFLPM--RSFGSRLVVRAAED--TPPAT 62

Query: 61  AA-------AATADAPVEEAKPKPAPIGPKRGAKVKILRKESYWYKDVGSVVTVDQDPNT 120
           A+       AA A A V  AK KP PIGPKRG+KVKILRKESYWYK+VGSVV VDQDP T
Sbjct: 63  ASSDSSSTTAAAAPAKVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQDPKT 122

Query: 121 RYPVVVRFNKVNYASVSTNNYALDEVEEV 143
           RYPVVVRF KVNYA++STNNYALDEVEEV
Sbjct: 123 RYPVVVRFAKVNYANISTNNYALDEVEEV 144

The following BLAST results are available for this feature:

BLAST of MS021936 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144405.1	2.4e-66	100.00	photosystem I reaction center subunit IV, chloroplastic-like [Momordica charanti...	[more]
XP_023536804.1	3.9e-56	88.11	photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022937722.1	6.6e-56	87.41	photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata...	[more]
XP_022965997.1	1.1e-55	87.41	photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita maxima]	[more]
XP_008441802.1	1.4e-53	87.76	PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis...	[more]

BLAST of MS021936 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q41228	6.7e-35	63.64	Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestri...	[more]
Q41229	2.5e-34	62.76	Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestri...	[more]
P12354	2.0e-31	72.12	Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q9S831	2.6e-31	56.95	Photosystem I reaction center subunit IV A, chloroplastic OS=Arabidopsis thalian...	[more]
Q9S714	2.2e-30	58.39	Photosystem I reaction center subunit IV B, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of MS021936 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CRI6	1.2e-66	100.00	photosystem I reaction center subunit IV, chloroplastic-like OS=Momordica charan...	[more]
A0A6J1FC09	3.2e-56	87.41	photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita moscha...	[more]
A0A6J1HLT8	5.5e-56	87.41	photosystem I reaction center subunit IV, chloroplastic-like OS=Cucurbita maxima...	[more]
A0A1S3B3T3	6.7e-54	87.76	photosystem I reaction center subunit IV, chloroplastic-like OS=Cucumis melo OX=...	[more]
A0A0A0LJQ1	4.8e-52	85.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G079660 PE=3 SV=1	[more]

BLAST of MS021936 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28750.1	1.9e-32	56.95	Photosystem I reaction centre subunit IV / PsaE protein	[more]
AT2G20260.1	1.6e-31	58.39	photosystem I subunit E-2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.30.50		coord: 76..143 e-value: 1.4E-36 score: 125.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..83
None	No IPR available	PANTHER	PTHR34549:SF7	PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A	coord: 3..142
IPR003375	Photosystem I PsaE, reaction centre subunit IV	PFAM	PF02427	PSI_PsaE	coord: 83..142 e-value: 1.0E-30 score: 105.2
IPR003375	Photosystem I PsaE, reaction centre subunit IV	PANTHER	PTHR34549	PHOTOSYSTEM I REACTION CENTER SUBUNIT IV A, CHLOROPLASTIC-RELATED	coord: 3..142
IPR008990	Electron transport accessory-like domain superfamily	SUPERFAMILY	50090	Electron transport accessory proteins	coord: 82..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021936.1	MS021936.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009538	photosystem I reaction center