MS021934 (gene) Bitter gourd (TR) v1

Overview


Name	MS021934
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	transcription factor MYC4-like
Location	scaffold110: 313907 .. 314314 (+)
RNA-Seq Expression	MS021934
Synteny	MS021934

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAGCTCCCTCCGTGCCCTACTCCCAAACGTCTCCGAAGCGGACAATGCAGCTGCAGTTCTTTTCCACGCTGTCTCATACATCAACGACCTCCGAACGAAGATCCAGCAATTGGAGTCTCAACTTCCGAACGAGGAAGAAGTGACGTCCAAAGGAGTGGAAGTAGAAGTGGTGGTAGAAGTGGAGATCGTGGGAGGAGATAAGGCAGTTGTTAGAGTTGAGACCCAGGGCGTGAGGTATGCAGAAGCTAGGGTCATGGAGGCCCTTAGGGACTTGGAGTTGAAGCTTCACCATGCCACAATCTCAAACTTGAACAATGTCACATGCCAACGTCTAGTCGTTGGCCTTCCTTCACCACAACAAACTACACAAAAAGGTATTCAAGCATCACTTCTCAAGATATTGCAC

mRNA sequence

TTCAGCTCCCTCCGTGCCCTACTCCCAAACGTCTCCGAAGCGGACAATGCAGCTGCAGTTCTTTTCCACGCTGTCTCATACATCAACGACCTCCGAACGAAGATCCAGCAATTGGAGTCTCAACTTCCGAACGAGGAAGAAGTGACGTCCAAAGGAGTGGAAGTAGAAGTGGTGGTAGAAGTGGAGATCGTGGGAGGAGATAAGGCAGTTGTTAGAGTTGAGACCCAGGGCGTGAGGTATGCAGAAGCTAGGGTCATGGAGGCCCTTAGGGACTTGGAGTTGAAGCTTCACCATGCCACAATCTCAAACTTGAACAATGTCACATGCCAACGTCTAGTCGTTGGCCTTCCTTCACCACAACAAACTACACAAAAAGGTATTCAAGCATCACTTCTCAAGATATTGCAC

Coding sequence (CDS)

TTCAGCTCCCTCCGTGCCCTACTCCCAAACGTCTCCGAAGCGGACAATGCAGCTGCAGTTCTTTTCCACGCTGTCTCATACATCAACGACCTCCGAACGAAGATCCAGCAATTGGAGTCTCAACTTCCGAACGAGGAAGAAGTGACGTCCAAAGGAGTGGAAGTAGAAGTGGTGGTAGAAGTGGAGATCGTGGGAGGAGATAAGGCAGTTGTTAGAGTTGAGACCCAGGGCGTGAGGTATGCAGAAGCTAGGGTCATGGAGGCCCTTAGGGACTTGGAGTTGAAGCTTCACCATGCCACAATCTCAAACTTGAACAATGTCACATGCCAACGTCTAGTCGTTGGCCTTCCTTCACCACAACAAACTACACAAAAAGGTATTCAAGCATCACTTCTCAAGATATTGCAC

Protein sequence

FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLESQLPNEEEVTSKGVEVEVVVEVEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHHATISNLNNVTCQRLVVGLPSPQQTTQKGIQASLLKILH

Homology

[Close]

BLAST of MS021934 vs. NCBI nr
Match: XP_022144465.1 (transcription factor MYC4-like [Momordica charantia])

HSP 1 Score: 236.5 bits (602), Expect = 1.4e-58
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLESQLPNEEEVTSKGVEVEVVVE 60
           FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLESQLPNEEEVTSKGVEVEVVVE
Sbjct: 22  FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLESQLPNEEEVTSKGVEVEVVVE 81

Query: 61  VEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHHATISNLNNVTCQRLVVGLPSPQ 120
           VEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHHATISNLNNVTCQRLVVGLPSPQ
Sbjct: 82  VEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHHATISNLNNVTCQRLVVGLPSPQ 141

Query: 121 QTTQKG 127
           QTTQKG
Sbjct: 142 QTTQKG 147

[Close]

BLAST of MS021934 vs. NCBI nr
Match: XP_022144464.1 (transcription factor bHLH14-like [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-26
Identity = 78/142 (54.93%), Postives = 104/142 (73.24%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNA-AAVLFHAVSYINDLRTKIQQLESQLP-----NEEEVTS--KG 60
           FSSLR+LLPN S +DN+ AAVL  AVSYIN+L+ K++ LES L       E+E TS  K 
Sbjct: 23  FSSLRSLLPNASNSDNSEAAVLSDAVSYINELQVKMEDLESHLDVKKSNPEDEATSGAKK 82

Query: 61  VEVEVVVEVEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHHATISNLNNVTCQRL 120
             +EV VEV+I+G D+AVVR++T+ + YA AR+MEALRDLELK+HHAT+ N N++T Q L
Sbjct: 83  SVMEVEVEVKIIGLDRAVVRIQTKNMSYAVARLMEALRDLELKVHHATMCNSNDITLQDL 142

Query: 121 VVGLPSPQQTTQKGIQASLLKI 135
           V+GLP   +TT++     LLK+
Sbjct: 143 VIGLPPQVETTEEDQNEELLKL 164

[Close]

BLAST of MS021934 vs. NCBI nr
Match: XP_038890552.1 (transcription factor MYC3-like [Benincasa hispida])

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-19
Identity = 61/126 (48.41%), Postives = 96/126 (76.19%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLESQL-------PNEEEVTSKGV 60
           F+SLR+++P+VS  D  A++L +A+SYIN+L+ KI ++ES++         EEE +S+  
Sbjct: 184 FNSLRSVVPSVSRMDK-ASLLSNAISYINELQKKISEMESRVLKKKGVEEMEEEASSRDE 243

Query: 61  EVEVV-VEVEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHHATISNLNNVTCQRL 119
             +V+ ++V+I+GGD+AV+RV+T+ V YA A++MEALRDLELK+ HA++SNL ++T Q L
Sbjct: 244 REKVIEIDVKIIGGDQAVIRVQTKNVSYAVAKLMEALRDLELKVRHASMSNLQDLTLQDL 303

[Close]

BLAST of MS021934 vs. NCBI nr
Match: XP_031736394.1 (transcription factor bHLH14-like [Cucumis sativus] >KGN61317.1 hypothetical protein Csa_005925 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 4.7e-19
Identity = 65/151 (43.05%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLESQLPNEEEVTSKGV------- 60
           F+SLR+++PNVS  D  A++L  AVSYIN+L  KI ++ES++  E++    GV       
Sbjct: 163 FNSLRSVVPNVSRMDK-ASLLSDAVSYINELEMKISEMESRVLKEKKEKKNGVDENEMEE 222

Query: 61  --------EVEVVVEVEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHHATISNLN 120
                   E  + ++V+I+GGD+AV+RVE++ + YA A++MEALRDLELK+ H ++ NL 
Sbjct: 223 EASSRDRRERGIEIDVKIIGGDRAVIRVESRNLSYAVAKLMEALRDLELKVEHGSMWNLK 282

Query: 121 NVTCQRLVVGLPSPQ-QTTQKGIQASLLKIL 136
           ++T Q LVV +PS    ++ +GI+ +LL IL
Sbjct: 283 DLTLQDLVVRVPSGHGYSSDEGIKKALLAIL 312

[Close]

BLAST of MS021934 vs. NCBI nr
Match: XP_008441948.1 (PREDICTED: transcription factor MYC3-like [Cucumis melo] >KAA0061409.1 transcription factor MYC3-like [Cucumis melo var. makuwa] >TYK28669.1 transcription factor MYC3-like [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 9.8e-17
Identity = 64/149 (42.95%), Postives = 98/149 (65.77%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLESQLPN------------EEEV 60
           F+SLR ++PNVS  D  A++L  AVSYIN+L  KI ++ES++              EEE 
Sbjct: 162 FNSLRIVVPNVSRMDK-ASLLSDAVSYINELEMKISEMESRVSKKKKKNGVDENEMEEEA 221

Query: 61  TSKG-VEVEVVVEVEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHHATISNLNNV 120
           +S+   E  + ++V+I+GGD+AV+RVE++ + YA A++MEALRDL LK+ H ++ N  ++
Sbjct: 222 SSRDRRERGIEIDVKIIGGDRAVIRVESRNLSYAVAKLMEALRDLGLKVEHGSMWNWKDL 281

Query: 121 TCQRLVVGLPSPQ-QTTQKGIQASLLKIL 136
           T Q LVV +PS     + +GI+ +LL IL
Sbjct: 282 TLQDLVVRVPSGHGYCSDEGIKRALLAIL 309

[Close]

BLAST of MS021934 vs. ExPASy Swiss-Prot
Match: A0A060KY90 (Transcription factor MYC1 OS=Solanum lycopersicum OX=4081 GN=MYC1 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.4e-11
Identity = 47/140 (33.57%), Postives = 87/140 (62.14%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQ-------QLESQLP-NEEEVTSKG 60
           F +LRA++PNVS+ D  A++L  A++YIN+L++K+Q       +L SQ+    +E+T+KG
Sbjct: 473 FYALRAVVPNVSKMDK-ASLLGDAIAYINELKSKVQNSDLDKEELRSQIECLRKELTNKG 532

Query: 61  VE--------------VEVVVEVEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHH 119
                           V++ ++V+++G D A++R++     +  AR+M AL+DL+L +HH
Sbjct: 533 SSNYSASPPLNQDVKIVDMDIDVKVIGWD-AMIRIQCSKKNHPAARLMAALKDLDLDVHH 592

[Close]

BLAST of MS021934 vs. ExPASy Swiss-Prot
Match: A0A3Q7HRZ6 (Transcription factor MYC2 OS=Solanum lycopersicum OX=4081 GN=MYC2 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 49/150 (32.67%), Postives = 85/150 (56.67%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLESQL------------------ 60
           F +LRA++PNVS+ D  A++L  A+SYIN+L++K+Q  ES                    
Sbjct: 529 FYALRAVVPNVSKMDK-ASLLGDAISYINELKSKLQNTESDKEDLKSQIEDLKKESRRPG 588

Query: 61  ----PNEEEVTSK---GVEVEVVVEVEIVGGDKAVVRVETQGVRYAEARVMEALRDLELK 120
               PN++   S    G  V+V ++V+I+G D A++R++     +  AR+M AL +L+L 
Sbjct: 589 PPPPPNQDLKMSSHTGGKIVDVDIDVKIIGWD-AMIRIQCNKKNHPAARLMAALMELDLD 648

Query: 121 LHHATISNLNNVTCQRLVVGLPSPQQTTQK 126
           +HHA++S +N++  Q+  V + S   T ++
Sbjct: 649 VHHASVSVVNDLMIQQATVKMGSRHYTEEQ 676

[Close]

BLAST of MS021934 vs. ExPASy Swiss-Prot
Match: O49687 (Transcription factor MYC4 OS=Arabidopsis thaliana OX=3702 GN=MYC4 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-10
Identity = 50/153 (32.68%), Postives = 94/153 (61.44%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLES---QLPNEEEVTSK------ 60
           F SLRA++PNVS+ D  A++L  A+SYI++L++K+Q+ ES   +L  + +V +K      
Sbjct: 432 FYSLRAVVPNVSKMDK-ASLLGDAISYISELKSKLQKAESDKEELQKQIDVMNKEAGNAK 491

Query: 61  -------------GVEVEVVVEVEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHH 120
                         V +E+ V+V+I+G D A++R++     +  A+ MEAL++L+L+++H
Sbjct: 492 SSVKDRKCLNQESSVLIEMEVDVKIIGWD-AMIRIQCSKRNHPGAKFMEALKELDLEVNH 551

Query: 121 ATISNLNNVTCQRLVVGLPSPQQTTQKGIQASL 132
           A++S +N++  Q+  V + + Q  TQ  ++ +L
Sbjct: 552 ASLSVVNDLMIQQATVKMGN-QFFTQDQLKVAL 581

[Close]

BLAST of MS021934 vs. ExPASy Swiss-Prot
Match: Q39204 (Transcription factor MYC2 OS=Arabidopsis thaliana OX=3702 GN=MYC2 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 4.2e-10
Identity = 55/155 (35.48%), Postives = 94/155 (60.65%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLES---QLPNE-EEV-------- 60
           F +LRA++PNVS+ D  A++L  A++YIN+L++K+ + ES   Q+ N+ EEV        
Sbjct: 468 FYALRAVVPNVSKMDK-ASLLGDAIAYINELKSKVVKTESEKLQIKNQLEEVKLELAGRK 527

Query: 61  -----------TSKGVEVEVVVEVEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLH 120
                       S    V + +EV+I+G D A++RVE+    +  AR+M AL DLEL+++
Sbjct: 528 ASASGGDMSSSCSSIKPVGMEIEVKIIGWD-AMIRVESSKRNHPAARLMSALMDLELEVN 587

Query: 121 HATISNLNNVTCQRLVVGLPSPQQTTQKGIQASLL 133
           HA++S +N++  Q+  V +   +  TQ+ ++ASL+
Sbjct: 588 HASMSVVNDLMIQQATVKM-GFRIYTQEQLRASLI 619

[Close]

BLAST of MS021934 vs. ExPASy Swiss-Prot
Match: Q9FIP9 (Transcription factor MYC3 OS=Arabidopsis thaliana OX=3702 GN=MYC3 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.1e-10
Identity = 48/147 (32.65%), Postives = 84/147 (57.14%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLESQLPNEEEVTSK--------- 60
           F SLRA++PNVS+ D  A++L  A+SYIN+L++K+QQ ES   ++EE+  K         
Sbjct: 431 FYSLRAVVPNVSKMDK-ASLLGDAISYINELKSKLQQAES---DKEEIQKKLDGMSKEGN 490

Query: 61  --------------------GVEVEVVVEVEIVGGDKAVVRVETQGVRYAEARVMEALRD 119
                                  +E+ ++V+I+G D  ++RV+     +  AR MEAL++
Sbjct: 491 NGKGCGSRAKERKSSNQDSTASSIEMEIDVKIIGWD-VMIRVQCGKKDHPGARFMEALKE 550

[Close]

BLAST of MS021934 vs. ExPASy TrEMBL
Match: A0A6J1CRP5 (transcription factor MYC4-like OS=Momordica charantia OX=3673 GN=LOC111014145 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 6.6e-59
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLESQLPNEEEVTSKGVEVEVVVE 60
           FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLESQLPNEEEVTSKGVEVEVVVE
Sbjct: 22  FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLESQLPNEEEVTSKGVEVEVVVE 81

Query: 61  VEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHHATISNLNNVTCQRLVVGLPSPQ 120
           VEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHHATISNLNNVTCQRLVVGLPSPQ
Sbjct: 82  VEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHHATISNLNNVTCQRLVVGLPSPQ 141

Query: 121 QTTQKG 127
           QTTQKG
Sbjct: 142 QTTQKG 147

[Close]

BLAST of MS021934 vs. ExPASy TrEMBL
Match: A0A6J1CSD3 (transcription factor bHLH14-like OS=Momordica charantia OX=3673 GN=LOC111014144 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 8.7e-27
Identity = 78/142 (54.93%), Postives = 104/142 (73.24%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNA-AAVLFHAVSYINDLRTKIQQLESQLP-----NEEEVTS--KG 60
           FSSLR+LLPN S +DN+ AAVL  AVSYIN+L+ K++ LES L       E+E TS  K 
Sbjct: 23  FSSLRSLLPNASNSDNSEAAVLSDAVSYINELQVKMEDLESHLDVKKSNPEDEATSGAKK 82

Query: 61  VEVEVVVEVEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHHATISNLNNVTCQRL 120
             +EV VEV+I+G D+AVVR++T+ + YA AR+MEALRDLELK+HHAT+ N N++T Q L
Sbjct: 83  SVMEVEVEVKIIGLDRAVVRIQTKNMSYAVARLMEALRDLELKVHHATMCNSNDITLQDL 142

Query: 121 VVGLPSPQQTTQKGIQASLLKI 135
           V+GLP   +TT++     LLK+
Sbjct: 143 VIGLPPQVETTEEDQNEELLKL 164

[Close]

BLAST of MS021934 vs. ExPASy TrEMBL
Match: A0A0A0LKN8 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G080170 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.3e-19
Identity = 65/151 (43.05%), Postives = 101/151 (66.89%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLESQLPNEEEVTSKGV------- 60
           F+SLR+++PNVS  D  A++L  AVSYIN+L  KI ++ES++  E++    GV       
Sbjct: 163 FNSLRSVVPNVSRMDK-ASLLSDAVSYINELEMKISEMESRVLKEKKEKKNGVDENEMEE 222

Query: 61  --------EVEVVVEVEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHHATISNLN 120
                   E  + ++V+I+GGD+AV+RVE++ + YA A++MEALRDLELK+ H ++ NL 
Sbjct: 223 EASSRDRRERGIEIDVKIIGGDRAVIRVESRNLSYAVAKLMEALRDLELKVEHGSMWNLK 282

Query: 121 NVTCQRLVVGLPSPQ-QTTQKGIQASLLKIL 136
           ++T Q LVV +PS    ++ +GI+ +LL IL
Sbjct: 283 DLTLQDLVVRVPSGHGYSSDEGIKKALLAIL 312

[Close]

BLAST of MS021934 vs. ExPASy TrEMBL
Match: A0A5A7V6X0 (Transcription factor MYC3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold165G00380 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.8e-17
Identity = 64/149 (42.95%), Postives = 98/149 (65.77%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLESQLPN------------EEEV 60
           F+SLR ++PNVS  D  A++L  AVSYIN+L  KI ++ES++              EEE 
Sbjct: 162 FNSLRIVVPNVSRMDK-ASLLSDAVSYINELEMKISEMESRVSKKKKKNGVDENEMEEEA 221

Query: 61  TSKG-VEVEVVVEVEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHHATISNLNNV 120
           +S+   E  + ++V+I+GGD+AV+RVE++ + YA A++MEALRDL LK+ H ++ N  ++
Sbjct: 222 SSRDRRERGIEIDVKIIGGDRAVIRVESRNLSYAVAKLMEALRDLGLKVEHGSMWNWKDL 281

Query: 121 TCQRLVVGLPSPQ-QTTQKGIQASLLKIL 136
           T Q LVV +PS     + +GI+ +LL IL
Sbjct: 282 TLQDLVVRVPSGHGYCSDEGIKRALLAIL 309

[Close]

BLAST of MS021934 vs. ExPASy TrEMBL
Match: A0A1S3B4K7 (transcription factor MYC3-like OS=Cucumis melo OX=3656 GN=LOC103485944 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.8e-17
Identity = 64/149 (42.95%), Postives = 98/149 (65.77%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLESQLPN------------EEEV 60
           F+SLR ++PNVS  D  A++L  AVSYIN+L  KI ++ES++              EEE 
Sbjct: 162 FNSLRIVVPNVSRMDK-ASLLSDAVSYINELEMKISEMESRVSKKKKKNGVDENEMEEEA 221

Query: 61  TSKG-VEVEVVVEVEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHHATISNLNNV 120
           +S+   E  + ++V+I+GGD+AV+RVE++ + YA A++MEALRDL LK+ H ++ N  ++
Sbjct: 222 SSRDRRERGIEIDVKIIGGDRAVIRVESRNLSYAVAKLMEALRDLGLKVEHGSMWNWKDL 281

Query: 121 TCQRLVVGLPSPQ-QTTQKGIQASLLKIL 136
           T Q LVV +PS     + +GI+ +LL IL
Sbjct: 282 TLQDLVVRVPSGHGYCSDEGIKRALLAIL 309

[Close]

BLAST of MS021934 vs. TAIR 10
Match: AT4G17880.1 (Basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11
Identity = 50/153 (32.68%), Postives = 94/153 (61.44%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLES---QLPNEEEVTSK------ 60
           F SLRA++PNVS+ D  A++L  A+SYI++L++K+Q+ ES   +L  + +V +K      
Sbjct: 432 FYSLRAVVPNVSKMDK-ASLLGDAISYISELKSKLQKAESDKEELQKQIDVMNKEAGNAK 491

Query: 61  -------------GVEVEVVVEVEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHH 120
                         V +E+ V+V+I+G D A++R++     +  A+ MEAL++L+L+++H
Sbjct: 492 SSVKDRKCLNQESSVLIEMEVDVKIIGWD-AMIRIQCSKRNHPGAKFMEALKELDLEVNH 551

Query: 121 ATISNLNNVTCQRLVVGLPSPQQTTQKGIQASL 132
           A++S +N++  Q+  V + + Q  TQ  ++ +L
Sbjct: 552 ASLSVVNDLMIQQATVKMGN-QFFTQDQLKVAL 581

[Close]

BLAST of MS021934 vs. TAIR 10
Match: AT1G32640.1 (Basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 65.9 bits (159), Expect = 3.0e-11
Identity = 55/155 (35.48%), Postives = 94/155 (60.65%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLES---QLPNE-EEV-------- 60
           F +LRA++PNVS+ D  A++L  A++YIN+L++K+ + ES   Q+ N+ EEV        
Sbjct: 468 FYALRAVVPNVSKMDK-ASLLGDAIAYINELKSKVVKTESEKLQIKNQLEEVKLELAGRK 527

Query: 61  -----------TSKGVEVEVVVEVEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLH 120
                       S    V + +EV+I+G D A++RVE+    +  AR+M AL DLEL+++
Sbjct: 528 ASASGGDMSSSCSSIKPVGMEIEVKIIGWD-AMIRVESSKRNHPAARLMSALMDLELEVN 587

Query: 121 HATISNLNNVTCQRLVVGLPSPQQTTQKGIQASLL 133
           HA++S +N++  Q+  V +   +  TQ+ ++ASL+
Sbjct: 588 HASMSVVNDLMIQQATVKM-GFRIYTQEQLRASLI 619

[Close]

BLAST of MS021934 vs. TAIR 10
Match: AT5G46760.1 (Basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 65.1 bits (157), Expect = 5.0e-11
Identity = 48/147 (32.65%), Postives = 84/147 (57.14%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLESQLPNEEEVTSK--------- 60
           F SLRA++PNVS+ D  A++L  A+SYIN+L++K+QQ ES   ++EE+  K         
Sbjct: 431 FYSLRAVVPNVSKMDK-ASLLGDAISYINELKSKLQQAES---DKEEIQKKLDGMSKEGN 490

Query: 61  --------------------GVEVEVVVEVEIVGGDKAVVRVETQGVRYAEARVMEALRD 119
                                  +E+ ++V+I+G D  ++RV+     +  AR MEAL++
Sbjct: 491 NGKGCGSRAKERKSSNQDSTASSIEMEIDVKIIGWD-VMIRVQCGKKDHPGARFMEALKE 550

[Close]

BLAST of MS021934 vs. TAIR 10
Match: AT5G46830.1 (NACL-inducible gene 1 )

HSP 1 Score: 62.8 bits (151), Expect = 2.5e-10
Identity = 45/131 (34.35%), Postives = 78/131 (59.54%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLE--------------------S 60
           F +LRA++PNVS+ D   ++L  AV YIN+L++K + +E                    +
Sbjct: 359 FYALRAVVPNVSKMDK-TSLLEDAVCYINELKSKAENVELEKHAIEIQFNELKEIAGQRN 418

Query: 61  QLPNEEEVTSKGVEVEVVVEVEIVGGDKAVVRVETQGVRYAEARVMEALRDLELKLHHAT 112
            +P+  +   K  E+ + +EV+I+  D A+VRVE++   +  AR+M AL DLEL+++HA+
Sbjct: 419 AIPSVCKYEEKASEM-MKIEVKIMESDDAMVRVESRKDHHPGARLMNALMDLELEVNHAS 478

[Close]

BLAST of MS021934 vs. TAIR 10
Match: AT4G00870.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 7.3e-10
Identity = 51/160 (31.87%), Postives = 88/160 (55.00%), Query Frame = 0


Query: 1   FSSLRALLPNVSEADNAAAVLFHAVSYINDLRTKIQQLESQ-----------LPNEEEVT 60
           F +LRA++P VS  D  A++L  AVSYI  L++KI  LE++           L N    T
Sbjct: 265 FYALRAIVPKVSRMDK-ASLLSDAVSYIESLKSKIDDLETEIKKMKMTETDKLDNSSSNT 324

Query: 61  S-KGVEVEV-------------VVEVEIVGGDKAVVRVETQGVRYAEARVMEALRDLELK 120
           S   VE +V              V+V+IV G++A++RV+T+ V +  + +M AL +++ +
Sbjct: 325 SPSSVEYQVNQKPSKSNRGSDLEVQVKIV-GEEAIIRVQTENVNHPTSALMSALMEMDCR 384

Query: 121 LHHATISNLNNVTCQRLVVGLPSPQQTTQKGIQASLLKIL 136
           + HA  S L+ V  Q +VV +P   ++  + ++ +L++ L
Sbjct: 385 VQHANASRLSQVMVQDVVVLVPEGLRSEDR-LRTTLVRTL 421

The following BLAST results are available for this feature:

BLAST of MS021934 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144465.1	1.4e-58	100.00	transcription factor MYC4-like [Momordica charantia]	[more]
XP_022144464.1	1.8e-26	54.93	transcription factor bHLH14-like [Momordica charantia]	[more]
XP_038890552.1	1.2e-19	48.41	transcription factor MYC3-like [Benincasa hispida]	[more]
XP_031736394.1	4.7e-19	43.05	transcription factor bHLH14-like [Cucumis sativus] >KGN61317.1 hypothetical prot...	[more]
XP_008441948.1	9.8e-17	42.95	PREDICTED: transcription factor MYC3-like [Cucumis melo] >KAA0061409.1 transcrip...	[more]

BLAST of MS021934 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A060KY90	6.4e-11	33.57	Transcription factor MYC1 OS=Solanum lycopersicum OX=4081 GN=MYC1 PE=1 SV=1	[more]
A0A3Q7HRZ6	1.1e-10	32.67	Transcription factor MYC2 OS=Solanum lycopersicum OX=4081 GN=MYC2 PE=1 SV=1	[more]
O49687	2.4e-10	32.68	Transcription factor MYC4 OS=Arabidopsis thaliana OX=3702 GN=MYC4 PE=1 SV=1	[more]
Q39204	4.2e-10	35.48	Transcription factor MYC2 OS=Arabidopsis thaliana OX=3702 GN=MYC2 PE=1 SV=2	[more]
Q9FIP9	7.1e-10	32.65	Transcription factor MYC3 OS=Arabidopsis thaliana OX=3702 GN=MYC3 PE=1 SV=1	[more]

BLAST of MS021934 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CRP5	6.6e-59	100.00	transcription factor MYC4-like OS=Momordica charantia OX=3673 GN=LOC111014145 PE...	[more]
A0A6J1CSD3	8.7e-27	54.93	transcription factor bHLH14-like OS=Momordica charantia OX=3673 GN=LOC111014144 ...	[more]
A0A0A0LKN8	2.3e-19	43.05	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G080170 PE=4 S...	[more]
A0A5A7V6X0	4.8e-17	42.95	Transcription factor MYC3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B4K7	4.8e-17	42.95	transcription factor MYC3-like OS=Cucumis melo OX=3656 GN=LOC103485944 PE=4 SV=1	[more]

BLAST of MS021934 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17880.1	1.7e-11	32.68	Basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT1G32640.1	3.0e-11	35.48	Basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G46760.1	5.0e-11	32.65	Basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G46830.1	2.5e-10	34.35	NACL-inducible gene 1	[more]
AT4G00870.1	7.3e-10	31.88	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 28..48
None	No IPR available	PANTHER	PTHR11514:SF40	TRANSCRIPTION FACTOR BHLH14	coord: 1..135
IPR045084	Transcription factor AIB/MYC-like	PANTHER	PTHR11514	MYC	coord: 1..135
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021934.1	MS021934.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity