MS021914 (gene) Bitter gourd (TR) v1

Overview


Name	MS021914
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	phospholipase A(1) LCAT3
Location	scaffold110: 71091 .. 71279 (-)
RNA-Seq Expression	MS021914
Synteny	MS021914

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTTGGTTGAATGTCCTTCAGTTTATGAGATGCGGACAAATCTAGGATTCAAATGGCATGCACAACCACAGATTCAAGTTTGGCAAAAAAGTACTGTTGATTTGAATTCATATGGTCCAACTGAAAGTTTTGCTTTATTTGCAGAAGCATTAAGAAATAACAAGGTACTATATTCAAACTTTACATTG

mRNA sequence

TTGTTGGTTGAATGTCCTTCAGTTTATGAGATGCGGACAAATCTAGGATTCAAATGGCATGCACAACCACAGATTCAAGTTTGGCAAAAAAGTACTGTTGATTTGAATTCATATGGTCCAACTGAAAGTTTTGCTTTATTTGCAGAAGCATTAAGAAATAACAAGGTACTATATTCAAACTTTACATTG

Coding sequence (CDS)

TTGTTGGTTGAATGTCCTTCAGTTTATGAGATGCGGACAAATCTAGGATTCAAATGGCATGCACAACCACAGATTCAAGTTTGGCAAAAAAGTACTGTTGATTTGAATTCATATGGTCCAACTGAAAGTTTTGCTTTATTTGCAGAAGCATTAAGAAATAACAAGGTACTATATTCAAACTTTACATTG

Protein sequence

LLVECPSVYEMRTNLGFKWHAQPQIQVWQKSTVDLNSYGPTESFALFAEALRNNKVLYSNFTL

Homology

[Close]

BLAST of MS021914 vs. NCBI nr
Match: XP_022144495.1 (phospholipase A(1) LCAT3 [Momordica charantia])

HSP 1 Score: 106.7 bits (265), Expect = 7.5e-20
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1   LLVECPSVYEMRTNLGFKWHAQPQIQVWQKSTVD------LNSYGPTESFALFAEALRNN 60
           LLVECPSVYEM TNLGFKWHAQPQIQVWQK++VD      L SYGPTESFALFAEALRNN
Sbjct: 244 LLVECPSVYEMLTNLGFKWHAQPQIQVWQKNSVDGKTSVGLKSYGPTESFALFAEALRNN 303

Query: 61  KVLYSNFTL 64
           ++ +   T+
Sbjct: 304 EIQFKGKTV 312

[Close]

BLAST of MS021914 vs. NCBI nr
Match: XP_022973913.1 (phospholipase A(1) LCAT3 [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 4.6e-17
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 1   LLVECPSVYEMRTNLGFKWHAQPQIQVWQKSTVD------LNSYGPTESFALFAEALRNN 60
           LLVECPS+YEM  NLGF WHAQPQIQVWQKS+VD      L SYGPT+S ALF EALRNN
Sbjct: 250 LLVECPSIYEMLGNLGFNWHAQPQIQVWQKSSVDGKTSVQLRSYGPTDSIALFEEALRNN 309

Query: 61  KVLYSNFTL 64
           ++ +   T+
Sbjct: 310 QIKFHGKTI 318

[Close]

BLAST of MS021914 vs. NCBI nr
Match: XP_023546771.1 (phospholipase A(1) LCAT3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.4 bits (241), Expect = 4.6e-17
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 1   LLVECPSVYEMRTNLGFKWHAQPQIQVWQKSTVD------LNSYGPTESFALFAEALRNN 60
           LLVECPS+YEM  NLGF WHAQPQIQVWQKS+VD      L SYGPT+S ALF EALRNN
Sbjct: 252 LLVECPSIYEMLGNLGFNWHAQPQIQVWQKSSVDGKTSVELKSYGPTDSIALFEEALRNN 311

Query: 61  KVLYSNFTL 64
           ++ +   T+
Sbjct: 312 QIKFHGKTI 320

[Close]

BLAST of MS021914 vs. NCBI nr
Match: XP_022933151.1 (phospholipase A(1) LCAT3 [Cucurbita moschata])

HSP 1 Score: 97.4 bits (241), Expect = 4.6e-17
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 1   LLVECPSVYEMRTNLGFKWHAQPQIQVWQKSTVD------LNSYGPTESFALFAEALRNN 60
           LLVECPS+YEM  NLGF WHAQPQIQVWQKS+VD      L SYGPT+S ALF EALRNN
Sbjct: 253 LLVECPSIYEMLGNLGFNWHAQPQIQVWQKSSVDGKTSVELKSYGPTDSIALFEEALRNN 312

Query: 61  KVLYSNFTL 64
           ++ +   T+
Sbjct: 313 QIKFHGKTI 321

[Close]

BLAST of MS021914 vs. NCBI nr
Match: KAG6598962.1 (Phospholipase A(1) LCAT3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.4 bits (241), Expect = 4.6e-17
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 1   LLVECPSVYEMRTNLGFKWHAQPQIQVWQKSTVD------LNSYGPTESFALFAEALRNN 60
           LLVECPS+YEM  NLGF WHAQPQIQVWQKS+VD      L SYGPT+S ALF EALRNN
Sbjct: 252 LLVECPSIYEMLGNLGFNWHAQPQIQVWQKSSVDGKTSVELKSYGPTDSIALFEEALRNN 311

Query: 61  KVLYSNFTL 64
           ++ +   T+
Sbjct: 312 QIKFHGKTI 320

[Close]

BLAST of MS021914 vs. ExPASy Swiss-Prot
Match: Q93V61 (Phospholipase A(1) LCAT3 OS=Arabidopsis thaliana OX=3702 GN=LCAT3 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.8e-12
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 1   LLVECPSVYEMRTNLGFKWHAQPQIQVWQK-------STVDLNSYGPTESFALFAEALRN 59
           LLVECPS+YEM  N  FKW  QP+I+VW+K       ++V+L S+G  ES  LF +AL+N
Sbjct: 243 LLVECPSIYEMMANPDFKWKKQPEIRVWRKKSENDVDTSVELESFGLIESIDLFNDALKN 302

[Close]

BLAST of MS021914 vs. ExPASy Swiss-Prot
Match: Q71N54 (Lecithin-cholesterol acyltransferase-like 4 OS=Arabidopsis thaliana OX=3702 GN=LCAT4 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-05
Identity = 25/67 (37.31%), Postives = 36/67 (53.73%), Query Frame = 0


Query: 1   LLVECPSVYEMRTNLGFKWHAQPQIQVWQK---------STVDLNSYGPTESFALFAEAL 59
           LL+ECPS+YE+     FKW   P +++W++         S V L SY   ES  +F ++L
Sbjct: 248 LLIECPSIYELMCCPYFKWELPPVLELWREKESNDGVGTSYVVLESYCSLESLEVFTKSL 307

[Close]

BLAST of MS021914 vs. ExPASy TrEMBL
Match: A0A6J1CRS5 (phospholipase A(1) LCAT3 OS=Momordica charantia OX=3673 GN=LOC111014171 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.6e-20
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1   LLVECPSVYEMRTNLGFKWHAQPQIQVWQKSTVD------LNSYGPTESFALFAEALRNN 60
           LLVECPSVYEM TNLGFKWHAQPQIQVWQK++VD      L SYGPTESFALFAEALRNN
Sbjct: 244 LLVECPSVYEMLTNLGFKWHAQPQIQVWQKNSVDGKTSVGLKSYGPTESFALFAEALRNN 303

Query: 61  KVLYSNFTL 64
           ++ +   T+
Sbjct: 304 EIQFKGKTV 312

[Close]

BLAST of MS021914 vs. ExPASy TrEMBL
Match: A0A6J1IEK6 (phospholipase A(1) LCAT3 OS=Cucurbita maxima OX=3661 GN=LOC111472543 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-17
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 1   LLVECPSVYEMRTNLGFKWHAQPQIQVWQKSTVD------LNSYGPTESFALFAEALRNN 60
           LLVECPS+YEM  NLGF WHAQPQIQVWQKS+VD      L SYGPT+S ALF EALRNN
Sbjct: 250 LLVECPSIYEMLGNLGFNWHAQPQIQVWQKSSVDGKTSVQLRSYGPTDSIALFEEALRNN 309

Query: 61  KVLYSNFTL 64
           ++ +   T+
Sbjct: 310 QIKFHGKTI 318

[Close]

BLAST of MS021914 vs. ExPASy TrEMBL
Match: A0A6J1EYB8 (phospholipase A(1) LCAT3 OS=Cucurbita moschata OX=3662 GN=LOC111439951 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-17
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 1   LLVECPSVYEMRTNLGFKWHAQPQIQVWQKSTVD------LNSYGPTESFALFAEALRNN 60
           LLVECPS+YEM  NLGF WHAQPQIQVWQKS+VD      L SYGPT+S ALF EALRNN
Sbjct: 253 LLVECPSIYEMLGNLGFNWHAQPQIQVWQKSSVDGKTSVELKSYGPTDSIALFEEALRNN 312

Query: 61  KVLYSNFTL 64
           ++ +   T+
Sbjct: 313 QIKFHGKTI 321

[Close]

BLAST of MS021914 vs. ExPASy TrEMBL
Match: A0A0A0LHR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093800 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.9e-16
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   LLVECPSVYEMRTNLGFKWHAQPQIQVWQKSTVD------LNSYGPTESFALFAEALRNN 60
           LLVECPS+YEM  +LGF WHAQP IQVWQKS+VD      L SYGPT+S ALF EALRNN
Sbjct: 245 LLVECPSIYEMLASLGFNWHAQPHIQVWQKSSVDGETSVNLKSYGPTDSIALFEEALRNN 304

Query: 61  KVLYSNFTL 64
           ++ +   T+
Sbjct: 305 EIKFHGKTI 313

[Close]

BLAST of MS021914 vs. ExPASy TrEMBL
Match: A0A5A7U650 (Phospholipase A(1) LCAT3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00130 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.3e-16
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 1   LLVECPSVYEMRTNLGFKWHAQPQIQVWQKS------TVDLNSYGPTESFALFAEALRNN 60
           LLVECPS+YEM  +LGF WHAQP IQVWQKS      +VDL SYGPT+S  LF EALRNN
Sbjct: 174 LLVECPSIYEMLASLGFNWHAQPHIQVWQKSSVDGETSVDLKSYGPTDSIDLFKEALRNN 233

Query: 61  KVLYSNFTL 64
           ++ +   T+
Sbjct: 234 EIKFHGKTI 242

[Close]

BLAST of MS021914 vs. TAIR 10
Match: AT3G03310.1 (lecithin:cholesterol acyltransferase 3 )

HSP 1 Score: 70.5 bits (171), Expect = 5.6e-13
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 1   LLVECPSVYEMRTNLGFKWHAQPQIQVWQK-------STVDLNSYGPTESFALFAEALRN 59
           LLVECPS+YEM  N  FKW  QP+I+VW+K       ++V+L S+G  ES  LF +AL+N
Sbjct: 243 LLVECPSIYEMMANPDFKWKKQPEIRVWRKKSENDVDTSVELESFGLIESIDLFNDALKN 302

[Close]

BLAST of MS021914 vs. TAIR 10
Match: AT4G19860.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 1.3e-06
Identity = 25/67 (37.31%), Postives = 36/67 (53.73%), Query Frame = 0


Query: 1   LLVECPSVYEMRTNLGFKWHAQPQIQVWQK---------STVDLNSYGPTESFALFAEAL 59
           LL+ECPS+YE+     FKW   P +++W++         S V L SY   ES  +F ++L
Sbjct: 248 LLIECPSIYELMCCPYFKWELPPVLELWREKESNDGVGTSYVVLESYCSLESLEVFTKSL 307

The following BLAST results are available for this feature:

BLAST of MS021914 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144495.1	7.5e-20	73.91	phospholipase A(1) LCAT3 [Momordica charantia]	[more]
XP_022973913.1	4.6e-17	66.67	phospholipase A(1) LCAT3 [Cucurbita maxima]	[more]
XP_023546771.1	4.6e-17	66.67	phospholipase A(1) LCAT3 [Cucurbita pepo subsp. pepo]	[more]
XP_022933151.1	4.6e-17	66.67	phospholipase A(1) LCAT3 [Cucurbita moschata]	[more]
KAG6598962.1	4.6e-17	66.67	Phospholipase A(1) LCAT3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MS021914 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93V61	7.8e-12	50.77	Phospholipase A(1) LCAT3 OS=Arabidopsis thaliana OX=3702 GN=LCAT3 PE=1 SV=1	[more]
Q71N54	1.9e-05	37.31	Lecithin-cholesterol acyltransferase-like 4 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]

BLAST of MS021914 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CRS5	3.6e-20	73.91	phospholipase A(1) LCAT3 OS=Momordica charantia OX=3673 GN=LOC111014171 PE=4 SV=...	[more]
A0A6J1IEK6	2.2e-17	66.67	phospholipase A(1) LCAT3 OS=Cucurbita maxima OX=3661 GN=LOC111472543 PE=4 SV=1	[more]
A0A6J1EYB8	2.2e-17	66.67	phospholipase A(1) LCAT3 OS=Cucurbita moschata OX=3662 GN=LOC111439951 PE=4 SV=1	[more]
A0A0A0LHR5	1.9e-16	63.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093800 PE=4 SV=1	[more]
A0A5A7U650	9.3e-16	62.32	Phospholipase A(1) LCAT3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of MS021914 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03310.1	5.6e-13	50.77	lecithin:cholesterol acyltransferase 3	[more]
AT4G19860.1	1.3e-06	37.31	alpha/beta-Hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11440	LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED	coord: 1..58
None	No IPR available	PANTHER	PTHR11440:SF53	PHOSPHOLIPASE A(1) LCAT3	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021914.1	MS021914.1	mRNA