MS021660 (gene) Bitter gourd (TR) v1

Overview


Name	MS021660
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold348: 145347 .. 145568 (+)
RNA-Seq Expression	MS021660
Synteny	MS021660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGATTGATGAGAGAGATGGGCGGTGGTAATGGAAGTTTTGGTGTCGCCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCCACCATAATTTTCTCTTGCTCCGACGGCATGTCCAAGGAGAGGACTAATTCCACGGCGGACGTCGAGCTTTACGGCGGCGGTTGCGCCGCCGGGTGTGGCGCTGGATGTGGTGCA

mRNA sequence

ATGGCGAGATTGATGAGAGAGATGGGCGGTGGTAATGGAAGTTTTGGTGTCGCCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCCACCATAATTTTCTCTTGCTCCGACGGCATGTCCAAGGAGAGGACTAATTCCACGGCGGACGTCGAGCTTTACGGCGGCGGTTGCGCCGCCGGGTGTGGCGCTGGATGTGGTGCA

Coding sequence (CDS)

ATGGCGAGATTGATGAGAGAGATGGGCGGTGGTAATGGAAGTTTTGGTGTCGCCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGCATAATCTCCACCATAATTTTCTCTTGCTCCGACGGCATGTCCAAGGAGAGGACTAATTCCACGGCGGACGTCGAGCTTTACGGCGGCGGTTGCGCCGCCGGGTGTGGCGCTGGATGTGGTGCA

Protein sequence

MARLMREMGGGNGSFGVAGDIYLLFWAALFTLCIISTIIFSCSDGMSKERTNSTADVELYGGGCAAGCGAGCGA

Homology

[Close]

BLAST of MS021660 vs. NCBI nr
Match: KAG6584341.1 (hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.2 bits (326), Expect = 7.4e-27
Identity = 65/74 (87.84%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 1  MARLMREMGGGNGSFGVAGDIYLLFWAALFTLCIISTIIFSCSDGMSKERTNSTADVELY 60
          MARLMRE G  NGSFG+AGDIYLLFWAALFTLCIISTIIFSCSDGMS +  NSTADVELY
Sbjct: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60

Query: 61 GGGCAAGCGAGCGA 75
          G GCAAGCGAGCGA
Sbjct: 61 GAGCAAGCGAGCGA 74

[Close]

BLAST of MS021660 vs. NCBI nr
Match: KAE8652552.1 (hypothetical protein Csa_013579 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 5.0e-23
Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1   MARLMREMGGGNGSFGVA-GDIYLLFWAALFTLCIISTIIFSCSDGMSKERTNSTADVEL 60
           MARLMRE+   NGSFG+A G+ Y LFW ALFTLCIIST+IFSCSDGMSK+R NST DVEL
Sbjct: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDR-NSTVDVEL 88

Query: 61  YGGGCAAGCGAGCGA 75
           YGGGCAAGCGAGCGA
Sbjct: 89  YGGGCAAGCGAGCGA 102

[Close]

BLAST of MS021660 vs. NCBI nr
Match: KAG6572949.1 (hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 5.7e-19
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MARLMREMGGGNGSFGVAGDIYLLFWAALFTLCIISTIIFSCSDGMSKERTNSTADVELY 60
          MARL+ E+G  +GSFG++GDI  LF AALFTLCIIS I FSCSDG+SKER NSTADVELY
Sbjct: 1  MARLIGEIGSVDGSFGLSGDISCLFLAALFTLCIISLITFSCSDGISKER-NSTADVELY 60

Query: 61 GGGCAAGCGA 71
          GGGCAAGCGA
Sbjct: 61 GGGCAAGCGA 69

[Close]

BLAST of MS021660 vs. NCBI nr
Match: XP_015882794.1 (uncharacterized protein LOC107418606 [Ziziphus jujuba])

HSP 1 Score: 87.0 bits (214), Expect = 7.2e-14
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 1  MARLMREMGGGNGSFGVAGDIYLLFWAALFTLCIISTIIFSCSDGMSKERTNSTADVELY 60
          M RL R++   +GS G AG  +++ W AL  +CIIS IIFSC+DG+SKE+T STAD ELY
Sbjct: 1  MVRLWRDLASVHGS-GSAG--FVVLWLALLGVCIISAIIFSCADGVSKEKT-STADTELY 60

Query: 61 GGGCAAGCGAGCGA 75
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 70

[Close]

BLAST of MS021660 vs. NCBI nr
Match: PON38946.1 (hypothetical protein PanWU01x14_308610 [Parasponia andersonii])

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 47/75 (62.67%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1  MARLMREMGGGNGSFGV--AGDIYLLFWAALFTLCIISTIIFSCSDGMSKERTNSTADVE 60
          M RL RE  G +G  G   +G   + F   L TLCI+STIIFSC+DG+SKE+T S AD E
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKT-SQADTE 60

Query: 61 LYGGGCAAGCGAGCG 74
          LYGGGCAAGCGAGCG
Sbjct: 61 LYGGGCAAGCGAGCG 74

[Close]

BLAST of MS021660 vs. ExPASy TrEMBL
Match: A0A0A0LQU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.4e-23
Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1  MARLMREMGGGNGSFGVA-GDIYLLFWAALFTLCIISTIIFSCSDGMSKERTNSTADVEL 60
          MARLMRE+   NGSFG+A G+ Y LFW ALFTLCIIST+IFSCSDGMSK+R NST DVEL
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMSKDR-NSTVDVEL 60

Query: 61 YGGGCAAGCGAGCGA 75
          YGGGCAAGCGAGCGA
Sbjct: 61 YGGGCAAGCGAGCGA 74

[Close]

BLAST of MS021660 vs. ExPASy TrEMBL
Match: A0A6P3ZT85 (uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC107418606 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.5e-14
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 1  MARLMREMGGGNGSFGVAGDIYLLFWAALFTLCIISTIIFSCSDGMSKERTNSTADVELY 60
          M RL R++   +GS G AG  +++ W AL  +CIIS IIFSC+DG+SKE+T STAD ELY
Sbjct: 1  MVRLWRDLASVHGS-GSAG--FVVLWLALLGVCIISAIIFSCADGVSKEKT-STADTELY 60

Query: 61 GGGCAAGCGAGCGA 75
          GGGCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 70

[Close]

BLAST of MS021660 vs. ExPASy TrEMBL
Match: A0A2P5AQX4 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 47/75 (62.67%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1  MARLMREMGGGNGSFGV--AGDIYLLFWAALFTLCIISTIIFSCSDGMSKERTNSTADVE 60
          M RL RE  G +G  G   +G   + F   L TLCI+STIIFSC+DG+SKE+T S AD E
Sbjct: 1  MVRLWREAAGVDGGVGSSHSGTFLVFFLGLLVTLCILSTIIFSCTDGVSKEKT-SQADTE 60

Query: 61 LYGGGCAAGCGAGCG 74
          LYGGGCAAGCGAGCG
Sbjct: 61 LYGGGCAAGCGAGCG 74

[Close]

BLAST of MS021660 vs. ExPASy TrEMBL
Match: A0A803R005 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1  MARLMREMGGGNGSFGVAGDIYLLFWAA-LFTLCIISTIIFSCSDGMSKERTNSTADVEL 60
          M RL RE+   +G  G     +L+F    L TLCI+STIIFSC+DG+SKE+T S  D EL
Sbjct: 1  MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKT-SQGDTEL 60

Query: 61 YGGGCAAGCGAGCGA 75
          YGGGCAAGCGAGCGA
Sbjct: 61 YGGGCAAGCGAGCGA 74

[Close]

BLAST of MS021660 vs. ExPASy TrEMBL
Match: A0A803R004 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 1  MARLMREMGGGNGSFGVAGDIYLLFWAA-LFTLCIISTIIFSCSDGMSKERTNSTADVEL 60
          M RL RE+   +G  G     +L+F    L TLCI+STIIFSC+DG+SKE+T S  D EL
Sbjct: 1  MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVSKEKT-SQGDTEL 60

Query: 61 YGGGCAAGCGAGCGA 75
          YGGGCAAGCGAGCGA
Sbjct: 61 YGGGCAAGCGAGCGA 74

[Close]

BLAST of MS021660 vs. TAIR 10
Match: AT1G68238.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 1.8e-07
Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 19 GDIYLLFWAALFTLCIISTIIFSCSDGMSKERTNSTADVELYGGGCAAGCGAGCG 74
          G++ L  WAA+    +I+ +IFSCSD  SK  TN     ++ G  CAAGCG GCG
Sbjct: 14 GEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHTND----DVNGSSCAAGCGGGCG 64

[Close]

BLAST of MS021660 vs. TAIR 10
Match: AT3G18250.1 (Putative membrane lipoprotein )

HSP 1 Score: 43.9 bits (102), Expect = 6.5e-05
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 18 AGDIYLLFWAALFTLCIISTIIFSCSDGMSKERTNSTADVELYGGGC-AAGCGAGCG 74
          A  ++ + + A+   CI+S ++FSC+DG+S  R  +T+     GGGC  AGCG GCG
Sbjct: 21 ASYLFHVVFLAVIGCCILSALLFSCADGVSDNR--ATSGTSTGGGGCGGAGCGGGCG 75

The following BLAST results are available for this feature:

BLAST of MS021660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584341.1	7.4e-27	87.84	hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652552.1	5.0e-23	81.33	hypothetical protein Csa_013579 [Cucumis sativus]	[more]
KAG6572949.1	5.7e-19	78.57	hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_015882794.1	7.2e-14	64.86	uncharacterized protein LOC107418606 [Ziziphus jujuba]	[more]
PON38946.1	2.7e-13	62.67	hypothetical protein PanWU01x14_308610 [Parasponia andersonii]	[more]

BLAST of MS021660 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS021660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQU7	2.4e-23	81.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1	[more]
A0A6P3ZT85	3.5e-14	64.86	uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC10741860...	[more]
A0A2P5AQX4	1.3e-13	62.67	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308610 PE...	[more]
A0A803R005	1.7e-13	61.33	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803R004	1.7e-13	61.33	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of MS021660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68238.1	1.8e-07	47.27	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G18250.1	6.5e-05	42.11	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37199	TRANSMEMBRANE PROTEIN	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021660.1	MS021660.1	mRNA