MS021642 (gene) Bitter gourd (TR) v1

Overview


Name	MS021642
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem I assembly protein Ycf4
Location	scaffold348: 9586 .. 9762 (-)
RNA-Seq Expression	MS021642
Synteny	MS021642

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCAGTCCATTAGAATAGAAGTTAAAGAGGGTATTTATGCACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCATTCCCTTGACTCGTACCGATCAGAATCTGACCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGTT

mRNA sequence

ATTCAGTCCATTAGAATAGAAGTTAAAGAGGGTATTTATGCACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCATTCCCTTGACTCGTACCGATCAGAATCTGACCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGTT

Coding sequence (CDS)

ATTCAGTCCATTAGAATAGAAGTTAAAGAGGGTATTTATGCACGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGGCCATTCCCTTGACTCGTACCGATCAGAATCTGACCCCACGAGAAATTGAGCAAAAGGCTGCCGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGTT

Protein sequence

IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV

Homology

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BLAST of MS021642 vs. NCBI nr
Match: YP_247610.1 (photosystem I assembly protein Ycf4 [Cucumis sativus] >CAJ00769.1 photosystem I assembly protein Ycf4 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 8.9e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 60
           IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Sbjct: 125 IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 183

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BLAST of MS021642 vs. NCBI nr
Match: YP_009752592.1 (photosystem I assembly protein Ycf4 [Trichosanthes homophylla] >QIT05073.1 photosystem I assembly protein Ycf4 [Trichosanthes kirilowii] >QJD26482.1 Ycf4 [Trichosanthes kirilowii var. japonica] >QJD26656.1 Ycf4 [Trichosanthes rosthornii] >QIT04988.1 photosystem I assembly protein Ycf4 [Trichosanthes homophylla] >QJD26307.1 Ycf4 [Trichosanthes kirilowii])

HSP 1 Score: 116.3 bits (290), Expect = 8.9e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 60
           IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Sbjct: 125 IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 183

[Close]

BLAST of MS021642 vs. NCBI nr
Match: YP_009752086.1 (photosystem I assembly protein Ycf4 [Dendrosicyos socotranus] >YP_009753100.1 photosystem I assembly protein Ycf4 [Corallocarpus boehmii] >QIT05496.1 photosystem I assembly protein Ycf4 [Dendrosicyos socotranus] >QIT06172.1 photosystem I assembly protein Ycf4 [Corallocarpus boehmii])

HSP 1 Score: 116.3 bits (290), Expect = 8.9e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 60
           IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Sbjct: 125 IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 183

[Close]

BLAST of MS021642 vs. NCBI nr
Match: YP_009560846.1 (Ycf4 [Trichosanthes kirilowii] >YP_009752423.1 photosystem I assembly protein Ycf4 [Trichosanthes tricuspidata] >YP_009753631.1 photosystem I assembly protein Ycf4 [Trichosanthes wallichiana] >YP_009753716.1 photosystem I assembly protein Ycf4 [Trichosanthes nervifolia] >QAB33201.1 Ycf4 [Trichosanthes kirilowii] >QIT04650.1 photosystem I assembly protein Ycf4 [Trichosanthes wallichiana] >QIT04819.1 photosystem I assembly protein Ycf4 [Trichosanthes tricuspidata] >QIT05327.1 photosystem I assembly protein Ycf4 [Trichosanthes nervifolia])

HSP 1 Score: 116.3 bits (290), Expect = 8.9e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 60
           IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Sbjct: 125 IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 183

[Close]

BLAST of MS021642 vs. NCBI nr
Match: ASY96369.1 (photosystem I assembly protein Ycf4 [Cucumis melo subsp. agrestis])

HSP 1 Score: 116.3 bits (290), Expect = 8.9e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 60
           IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Sbjct: 125 IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 183

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BLAST of MS021642 vs. ExPASy Swiss-Prot
Match: Q2QD78 (Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-25
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 60
           IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Sbjct: 125 IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 183

[Close]

BLAST of MS021642 vs. ExPASy Swiss-Prot
Match: A0ZZ46 (Photosystem I assembly protein Ycf4 OS=Gossypium barbadense OX=3634 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.4e-25
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 60
           IQSIRIEVKEGIYARRVLYMEIRGQGA+PLTRTD+NLTPREIEQKAAELAYFLRVPIEV
Sbjct: 125 IQSIRIEVKEGIYARRVLYMEIRGQGAVPLTRTDENLTPREIEQKAAELAYFLRVPIEV 183

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BLAST of MS021642 vs. ExPASy Swiss-Prot
Match: Q2L913 (Photosystem I assembly protein Ycf4 OS=Gossypium hirsutum OX=3635 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.4e-25
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 60
           IQSIRIEVKEGIYARRVLYMEIRGQGA+PLTRTD+NLTPREIEQKAAELAYFLRVPIEV
Sbjct: 125 IQSIRIEVKEGIYARRVLYMEIRGQGAVPLTRTDENLTPREIEQKAAELAYFLRVPIEV 183

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BLAST of MS021642 vs. ExPASy Swiss-Prot
Match: Q14FE6 (Photosystem I assembly protein Ycf4 OS=Populus alba OX=43335 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 7.5e-25
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1   IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 60
           IQSIRIEVKEG YARRVLYMEIRGQGAIPLTRTD+NLTPREIEQKAAELAYFLRVPIEV
Sbjct: 125 IQSIRIEVKEGFYARRVLYMEIRGQGAIPLTRTDENLTPREIEQKAAELAYFLRVPIEV 183

[Close]

BLAST of MS021642 vs. ExPASy Swiss-Prot
Match: A4GYS2 (Photosystem I assembly protein Ycf4 OS=Populus trichocarpa OX=3694 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 7.5e-25
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1   IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 60
           IQSIRIEVKEG YARRVLYMEIRGQGAIPLTRTD+NLTPREIEQKAAELAYFLRVPIEV
Sbjct: 125 IQSIRIEVKEGFYARRVLYMEIRGQGAIPLTRTDENLTPREIEQKAAELAYFLRVPIEV 183

[Close]

BLAST of MS021642 vs. ExPASy TrEMBL
Match: A0A218KG38 (Photosystem I assembly protein Ycf4 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.3e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 60
           IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Sbjct: 125 IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 183

[Close]

BLAST of MS021642 vs. ExPASy TrEMBL
Match: A0A6H0ESZ3 (Photosystem I assembly protein Ycf4 OS=Trichosanthes kirilowii OX=3677 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.3e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 60
           IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Sbjct: 125 IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 183

[Close]

BLAST of MS021642 vs. ExPASy TrEMBL
Match: A0A1X9Q1L1 (Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.3e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 60
           IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Sbjct: 125 IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 183

[Close]

BLAST of MS021642 vs. ExPASy TrEMBL
Match: A0A1S4EU22 (Photosystem I assembly protein Ycf4 OS=Cucumis melo OX=3656 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.3e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 60
           IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Sbjct: 125 IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 183

[Close]

BLAST of MS021642 vs. ExPASy TrEMBL
Match: A0A249S031 (Photosystem I assembly protein Ycf4 OS=Cucumis melo var. cantalupensis OX=3658 GN=ycf4 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.3e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1   IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 60
           IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV
Sbjct: 125 IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 183

[Close]

BLAST of MS021642 vs. TAIR 10
Match: ATCG00520.1 (unfolded protein binding )

HSP 1 Score: 104.4 bits (259), Expect = 3.2e-23
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1   IQSIRIEVKEGIYARRVLYMEIRGQGAIPLTRTDQNLTPREIEQKAAELAYFLRVPIEV 60
           IQSIRIEVKEG+ ARRVLYMEIRGQGAIPL RTD+N T REIEQKAAELAYFLRVPIEV
Sbjct: 125 IQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVPIEV 183

The following BLAST results are available for this feature:

BLAST of MS021642 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_247610.1	8.9e-23	100.00	photosystem I assembly protein Ycf4 [Cucumis sativus] >CAJ00769.1 photosystem I ...	[more]
YP_009752592.1	8.9e-23	100.00	photosystem I assembly protein Ycf4 [Trichosanthes homophylla] >QIT05073.1 photo...	[more]
YP_009752086.1	8.9e-23	100.00	photosystem I assembly protein Ycf4 [Dendrosicyos socotranus] >YP_009753100.1 ph...	[more]
YP_009560846.1	8.9e-23	100.00	Ycf4 [Trichosanthes kirilowii] >YP_009752423.1 photosystem I assembly protein Yc...	[more]
ASY96369.1	8.9e-23	100.00	photosystem I assembly protein Ycf4 [Cucumis melo subsp. agrestis]	[more]

BLAST of MS021642 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD78	1.2e-25	100.00	Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1	[more]
A0ZZ46	3.4e-25	96.61	Photosystem I assembly protein Ycf4 OS=Gossypium barbadense OX=3634 GN=ycf4 PE=3...	[more]
Q2L913	3.4e-25	96.61	Photosystem I assembly protein Ycf4 OS=Gossypium hirsutum OX=3635 GN=ycf4 PE=3 S...	[more]
Q14FE6	7.5e-25	96.61	Photosystem I assembly protein Ycf4 OS=Populus alba OX=43335 GN=ycf4 PE=3 SV=1	[more]
A4GYS2	7.5e-25	96.61	Photosystem I assembly protein Ycf4 OS=Populus trichocarpa OX=3694 GN=ycf4 PE=3 ...	[more]

BLAST of MS021642 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG38	4.3e-23	100.00	Photosystem I assembly protein Ycf4 OS=Cucumis sativus var. hardwickii OX=319220...	[more]
A0A6H0ESZ3	4.3e-23	100.00	Photosystem I assembly protein Ycf4 OS=Trichosanthes kirilowii OX=3677 GN=ycf4 P...	[more]
A0A1X9Q1L1	4.3e-23	100.00	Photosystem I assembly protein Ycf4 OS=Cucumis sativus OX=3659 GN=ycf4 PE=3 SV=1	[more]
A0A1S4EU22	4.3e-23	100.00	Photosystem I assembly protein Ycf4 OS=Cucumis melo OX=3656 GN=ycf4 PE=3 SV=1	[more]
A0A249S031	4.3e-23	100.00	Photosystem I assembly protein Ycf4 OS=Cucumis melo var. cantalupensis OX=3658 G...	[more]

BLAST of MS021642 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00520.1	3.2e-23	89.83	unfolded protein binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003359	Photosystem I Ycf4, assembly	PFAM	PF02392	Ycf4	coord: 1..58 e-value: 1.6E-20 score: 73.4
None	No IPR available	PANTHER	PTHR33288:SF4	PHOTOSYSTEM I ASSEMBLY PROTEIN YCF4	coord: 1..59
None	No IPR available	PANTHER	PTHR33288	FAMILY NOT NAMED	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021642.1	MS021642.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009579	thylakoid