MS021500 (gene) Bitter gourd (TR) v1

Overview


Name	MS021500
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	HMG-Y-related protein A
Location	scaffold208: 155026 .. 155508 (-)
RNA-Seq Expression	MS021500
Synteny	MS021500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGATGATTATGTCGGCGATCGACGCCATCAACGACAAAAACGGGGCGAACAAATCGGCGATAACGAAGCAAATCGAGTCCACCTACGGCGATCTACCGCCGGCTTTCACCACTCTCCTCTCCCACCACTTAGACGTGATGAAGCAGACCGGGCAGCTCCTCTTCCTCAAAAACAACTACATGAGGCCAGATCCCAACGCGCCGCCCAAGCGCGGCCGCGGCCGCCCCCCCAAGCCCAAAGTCCCCCTCCCGCCGGGCACCGTCGTGTCTCCGCCGCGCCCACGTGGCCGCCCGCCCAAGCCCAAGGACCCCTTCGCCCCCATTTCGCAGCCCAAGAAGAAAACCTCCTCGGGCAGTGGAAGGCCACGCGGCCGCCCGCCGAAGTACCCCAAGCCGGCTCCGACGTCGGCTCCGGTCGCCGGCCCGCCCAGAGGCAGAGGCCGGCCGCCCAAGGTAAAGCCGGCCGTCGCCCCAATTGGGTGC

mRNA sequence

CAGATGATTATGTCGGCGATCGACGCCATCAACGACAAAAACGGGGCGAACAAATCGGCGATAACGAAGCAAATCGAGTCCACCTACGGCGATCTACCGCCGGCTTTCACCACTCTCCTCTCCCACCACTTAGACGTGATGAAGCAGACCGGGCAGCTCCTCTTCCTCAAAAACAACTACATGAGGCCAGATCCCAACGCGCCGCCCAAGCGCGGCCGCGGCCGCCCCCCCAAGCCCAAAGTCCCCCTCCCGCCGGGCACCGTCGTGTCTCCGCCGCGCCCACGTGGCCGCCCGCCCAAGCCCAAGGACCCCTTCGCCCCCATTTCGCAGCCCAAGAAGAAAACCTCCTCGGGCAGTGGAAGGCCACGCGGCCGCCCGCCGAAGTACCCCAAGCCGGCTCCGACGTCGGCTCCGGTCGCCGGCCCGCCCAGAGGCAGAGGCCGGCCGCCCAAGGTAAAGCCGGCCGTCGCCCCAATTGGGTGC

Coding sequence (CDS)

CAGATGATTATGTCGGCGATCGACGCCATCAACGACAAAAACGGGGCGAACAAATCGGCGATAACGAAGCAAATCGAGTCCACCTACGGCGATCTACCGCCGGCTTTCACCACTCTCCTCTCCCACCACTTAGACGTGATGAAGCAGACCGGGCAGCTCCTCTTCCTCAAAAACAACTACATGAGGCCAGATCCCAACGCGCCGCCCAAGCGCGGCCGCGGCCGCCCCCCCAAGCCCAAAGTCCCCCTCCCGCCGGGCACCGTCGTGTCTCCGCCGCGCCCACGTGGCCGCCCGCCCAAGCCCAAGGACCCCTTCGCCCCCATTTCGCAGCCCAAGAAGAAAACCTCCTCGGGCAGTGGAAGGCCACGCGGCCGCCCGCCGAAGTACCCCAAGCCGGCTCCGACGTCGGCTCCGGTCGCCGGCCCGCCCAGAGGCAGAGGCCGGCCGCCCAAGGTAAAGCCGGCCGTCGCCCCAATTGGGTGC

Protein sequence

QMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTSSGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPIGC

Homology

[Close]

BLAST of MS021500 vs. NCBI nr
Match: XP_004150116.1 (HMG-Y-related protein A [Cucumis sativus] >KGN51483.1 hypothetical protein Csa_008586 [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 7.7e-77
Identity = 150/162 (92.59%), Postives = 160/162 (98.77%), Query Frame = 0


Query: 1   QMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNY 60
           +MIM+AID++NDKNG +KSAITKQIESTYGDLPPAFTTLL+HHLDVMKQTGQLLF+KNNY
Sbjct: 25  EMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNY 84

Query: 61  MRPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTSSGSG 120
           M+PDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKT+SGSG
Sbjct: 85  MKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSG 144

Query: 121 RPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPIGC 162
           RPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPAVAP+GC
Sbjct: 145 RPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPVGC 186

[Close]

BLAST of MS021500 vs. NCBI nr
Match: XP_008466945.1 (PREDICTED: HMG-Y-related protein A [Cucumis melo] >KAA0046335.1 HMG-Y-related protein A [Cucumis melo var. makuwa] >TYK30498.1 HMG-Y-related protein A [Cucumis melo var. makuwa])

HSP 1 Score: 297.0 bits (759), Expect = 1.0e-76
Identity = 150/162 (92.59%), Postives = 160/162 (98.77%), Query Frame = 0


Query: 1   QMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNY 60
           +MIM+AID++NDKNG +KSAITKQIESTYGDLPPAFTTLL+HHLDVMKQTGQLLF+KNNY
Sbjct: 25  EMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNY 84

Query: 61  MRPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTSSGSG 120
           M+PDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKT+SGSG
Sbjct: 85  MKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSG 144

Query: 121 RPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPIGC 162
           RPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPAVAP+GC
Sbjct: 145 RPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPVGC 186

[Close]

BLAST of MS021500 vs. NCBI nr
Match: XP_038906720.1 (HMG-Y-related protein A-like [Benincasa hispida])

HSP 1 Score: 296.6 bits (758), Expect = 1.3e-76
Identity = 147/161 (91.30%), Postives = 159/161 (98.76%), Query Frame = 0


Query: 1   QMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNY 60
           +MIM+AI+++NDKNG +KSAITKQIESTYGDLPPAF+TLL+HHLDVMKQTGQLLF+KNNY
Sbjct: 25  EMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAFSTLLTHHLDVMKQTGQLLFVKNNY 84

Query: 61  MRPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTSSGSG 120
           M+PDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKT+ GSG
Sbjct: 85  MKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTTPGSG 144

Query: 121 RPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPIGC 162
           RPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAP+GC
Sbjct: 145 RPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPVGC 185

[Close]

BLAST of MS021500 vs. NCBI nr
Match: XP_023545599.1 (HMG-Y-related protein B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292.0 bits (746), Expect = 3.2e-75
Identity = 145/161 (90.06%), Postives = 155/161 (96.27%), Query Frame = 0


Query: 1   QMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNY 60
           +MIMSAIDA+NDKNG +KS +TKQIESTYGDLPPAFTTLL+HHLDVMKQTGQLLF+KNNY
Sbjct: 25  EMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNY 84

Query: 61  MRPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTSSGSG 120
           M+PDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPK +DPFAPISQPKKK SSGSG
Sbjct: 85  MKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSG 144

Query: 121 RPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPIGC 162
           RPRGRPPKYPKPAPTS PVA PPRGRGRPPK+KPAVAP+GC
Sbjct: 145 RPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC 185

[Close]

BLAST of MS021500 vs. NCBI nr
Match: XP_022953026.1 (HMG-Y-related protein B-like [Cucurbita moschata] >XP_022990103.1 HMG-Y-related protein B-like [Cucurbita maxima] >KAG6601871.1 HMG-Y-related protein A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032572.1 HMG-Y-related protein A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.0 bits (746), Expect = 3.2e-75
Identity = 145/161 (90.06%), Postives = 155/161 (96.27%), Query Frame = 0


Query: 1   QMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNY 60
           +MIMSAIDA+NDKNG +KS +TKQIESTYGDLPPAFTTLL+HHLDVMKQTGQLLF+KNNY
Sbjct: 25  EMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNY 84

Query: 61  MRPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTSSGSG 120
           M+PDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPK +DPFAPISQPKKK SSGSG
Sbjct: 85  MKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSG 144

Query: 121 RPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPIGC 162
           RPRGRPPKYPKPAPTS PVA PPRGRGRPPK+KPAVAP+GC
Sbjct: 145 RPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC 185

[Close]

BLAST of MS021500 vs. ExPASy Swiss-Prot
Match: Q00423 (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.2e-44
Identity = 100/160 (62.50%), Postives = 121/160 (75.62%), Query Frame = 0


Query: 1   QMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNY 60
           +MI+  ++A+N+ NG+NKSAI+K IE+TYG+LP A  T+L  HL+ MK +G+L F +NNY
Sbjct: 17  EMIVKTLEALNEPNGSNKSAISKYIETTYGELPDA--TVLGSHLNKMKDSGELSFKQNNY 76

Query: 61  MRPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTSSGSG 120
           M+ DPNAPPKRGRGRPPKPK PLPPGTVVSPPRPRGRP  PKDP AP   PK K + GSG
Sbjct: 77  MKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRGRP--PKDPNAPPKSPKAKATPGSG 136

Query: 121 RPRGRPPKYPKPAPTSAPVA-GPPRGRGRPPKVKPAVAPI 160
           RPRGRP K P+    +AP A    R RGRPPKVKP +  +
Sbjct: 137 RPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQLTEV 172

[Close]

BLAST of MS021500 vs. ExPASy Swiss-Prot
Match: Q43386 (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.9e-42
Identity = 107/181 (59.12%), Postives = 126/181 (69.61%), Query Frame = 0


Query: 1   QMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNY 60
           QMIM AI+++NDKNG NK+ I K IEST   LPP+  TLLS+HL+ MK+TGQL+ +KNNY
Sbjct: 28  QMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIMVKNNY 87

Query: 61  MRPDPNAPPKRGRGRPPKPK---------VPLPPGTVVS--PPRPRGRPPKPKDPFAPIS 120
           M+PDP+APPKRGRGRPPK K           +   TVVS  PPR RGRPPKPKDP  P  
Sbjct: 88  MKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPKPKDPSEP-- 147

Query: 121 QPKKKTSSGSGRPRGRPPKYPK--------PAPTSAPVAGPPRGRGRPPKVKP-AVAPIG 162
            P++K  +GSGRPRGRPPK P+        P P +A   G  RGRGRPPKVKP  VAP+G
Sbjct: 148 -PQEKVITGSGRPRGRPPKRPRTDSETVAAPEP-AAQATGERRGRGRPPKVKPTVVAPVG 204

[Close]

BLAST of MS021500 vs. ExPASy Swiss-Prot
Match: Q10370 (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.7e-39
Identity = 94/152 (61.84%), Postives = 113/152 (74.34%), Query Frame = 0


Query: 9   AINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNYMRPDPNAP 68
           A+N+ +G+NKSAI+K IE+TYG+LP    T+L  HL+ MK++G+L F +NNYM+ DPNAP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELPD--ETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 69  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTSSGSGRPRGRPPK 128
           PKRGRGRPPKPKVPLPPGTVVSPPRPRGRP  PKDP AP   PK K +  +GRPRGRP K
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRP--PKDPNAPPKSPKAKATPATGRPRGRPKK 120

Query: 129 YPK-PAPTSAPVAGPPRGRGRPPKVKPAVAPI 160
             + PA  S       R RGRPPKVKP +  +
Sbjct: 121 VARSPAVPSPTAVSTGRPRGRPPKVKPQLTEV 148

[Close]

BLAST of MS021500 vs. ExPASy Swiss-Prot
Match: Q9FYS5 (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-30
Identity = 90/173 (52.02%), Postives = 114/173 (65.90%), Query Frame = 0


Query: 1   QMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNY 60
           +MI++AI+ ++DK+G+NKSAI+K IE  YG LPPA  +LL+ HL  MK++G+L+FLKNNY
Sbjct: 17  EMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHLARMKESGELVFLKNNY 76

Query: 61  MRPD-PNAPPKRGRGRPPK---PKVPLP-PGTVVSPPRPRGRPPKPKDPFAPISQPKKKT 120
            R   P+APPKRGRGRPPK   P  P P P +  S  R RGRPPK K   +P+    K+ 
Sbjct: 77  FRAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSSTGRGRGRPPKAK---SPLEAAVKQA 136

Query: 121 SSGSGRPRGRPPK----------YPKPAPTSAPVAGPP--RGRGRPPKVKPAV 157
           ++G  +PRGRPPK           P PAP  A     P  RGRGRPPKV+PAV
Sbjct: 137 TAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGSTPGKRGRGRPPKVRPAV 186

[Close]

BLAST of MS021500 vs. ExPASy TrEMBL
Match: A0A0A0KPG4 (H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G568810 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.7e-77
Identity = 150/162 (92.59%), Postives = 160/162 (98.77%), Query Frame = 0


Query: 1   QMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNY 60
           +MIM+AID++NDKNG +KSAITKQIESTYGDLPPAFTTLL+HHLDVMKQTGQLLF+KNNY
Sbjct: 25  EMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNY 84

Query: 61  MRPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTSSGSG 120
           M+PDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKT+SGSG
Sbjct: 85  MKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSG 144

Query: 121 RPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPIGC 162
           RPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPAVAP+GC
Sbjct: 145 RPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPVGC 186

[Close]

BLAST of MS021500 vs. ExPASy TrEMBL
Match: A0A5D3E3W3 (HMG-Y-related protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00410 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 4.8e-77
Identity = 150/162 (92.59%), Postives = 160/162 (98.77%), Query Frame = 0


Query: 1   QMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNY 60
           +MIM+AID++NDKNG +KSAITKQIESTYGDLPPAFTTLL+HHLDVMKQTGQLLF+KNNY
Sbjct: 25  EMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNY 84

Query: 61  MRPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTSSGSG 120
           M+PDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKT+SGSG
Sbjct: 85  MKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSG 144

Query: 121 RPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPIGC 162
           RPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPAVAP+GC
Sbjct: 145 RPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPVGC 186

[Close]

BLAST of MS021500 vs. ExPASy TrEMBL
Match: A0A1S3CSD8 (HMG-Y-related protein A OS=Cucumis melo OX=3656 GN=LOC103504324 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 4.8e-77
Identity = 150/162 (92.59%), Postives = 160/162 (98.77%), Query Frame = 0


Query: 1   QMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNY 60
           +MIM+AID++NDKNG +KSAITKQIESTYGDLPPAFTTLL+HHLDVMKQTGQLLF+KNNY
Sbjct: 25  EMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNY 84

Query: 61  MRPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTSSGSG 120
           M+PDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKT+SGSG
Sbjct: 85  MKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTTSGSG 144

Query: 121 RPRGRPPKYPKPAPTSA-PVAGPPRGRGRPPKVKPAVAPIGC 162
           RPRGRPPKYPKPAPTSA PVAGPPRGRGRPPKVKPAVAP+GC
Sbjct: 145 RPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPAVAPVGC 186

[Close]

BLAST of MS021500 vs. ExPASy TrEMBL
Match: A0A6J1JSA2 (HMG-Y-related protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111487099 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.6e-75
Identity = 145/161 (90.06%), Postives = 155/161 (96.27%), Query Frame = 0


Query: 1   QMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNY 60
           +MIMSAIDA+NDKNG +KS +TKQIESTYGDLPPAFTTLL+HHLDVMKQTGQLLF+KNNY
Sbjct: 25  EMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNY 84

Query: 61  MRPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTSSGSG 120
           M+PDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPK +DPFAPISQPKKK SSGSG
Sbjct: 85  MKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSG 144

Query: 121 RPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPIGC 162
           RPRGRPPKYPKPAPTS PVA PPRGRGRPPK+KPAVAP+GC
Sbjct: 145 RPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC 185

[Close]

BLAST of MS021500 vs. ExPASy TrEMBL
Match: A0A6J1GLV6 (HMG-Y-related protein B-like OS=Cucurbita moschata OX=3662 GN=LOC111455542 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.6e-75
Identity = 145/161 (90.06%), Postives = 155/161 (96.27%), Query Frame = 0


Query: 1   QMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNY 60
           +MIMSAIDA+NDKNG +KS +TKQIESTYGDLPPAFTTLL+HHLDVMKQTGQLLF+KNNY
Sbjct: 25  EMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNY 84

Query: 61  MRPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKTSSGSG 120
           M+PDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPK +DPFAPISQPKKK SSGSG
Sbjct: 85  MKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSG 144

Query: 121 RPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAVAPIGC 162
           RPRGRPPKYPKPAPTS PVA PPRGRGRPPK+KPAVAP+GC
Sbjct: 145 RPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC 185

[Close]

BLAST of MS021500 vs. TAIR 10
Match: AT1G14900.1 (high mobility group A )

HSP 1 Score: 172.2 bits (435), Expect = 3.5e-43
Identity = 107/181 (59.12%), Postives = 126/181 (69.61%), Query Frame = 0


Query: 1   QMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNY 60
           QMIM AI+++NDKNG NK+ I K IEST   LPP+  TLLS+HL+ MK+TGQL+ +KNNY
Sbjct: 28  QMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIMVKNNY 87

Query: 61  MRPDPNAPPKRGRGRPPKPK---------VPLPPGTVVS--PPRPRGRPPKPKDPFAPIS 120
           M+PDP+APPKRGRGRPPK K           +   TVVS  PPR RGRPPKPKDP  P  
Sbjct: 88  MKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPKPKDPSEP-- 147

Query: 121 QPKKKTSSGSGRPRGRPPKYPK--------PAPTSAPVAGPPRGRGRPPKVKP-AVAPIG 162
            P++K  +GSGRPRGRPPK P+        P P +A   G  RGRGRPPKVKP  VAP+G
Sbjct: 148 -PQEKVITGSGRPRGRPPKRPRTDSETVAAPEP-AAQATGERRGRGRPPKVKPTVVAPVG 204

[Close]

BLAST of MS021500 vs. TAIR 10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-07
Identity = 61/183 (33.33%), Postives = 86/183 (46.99%), Query Frame = 0


Query: 1   QMIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNY 60
           +MI +AI A+N+ +G++K AI++ IE  Y  L  A   LL+HHL  +K +G L  +K +Y
Sbjct: 70  EMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMVKKSY 129

Query: 61  MRPDPNAPP--------KRGRGRP-PKPKV-------PLPPGTVVSP-PRPRGRPPKPKD 120
                + PP           +G   P+ ++       P+  G+   P  R RGRPPKPK 
Sbjct: 130 KIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMASGSASQPLKRGRGRPPKPKP 189

Query: 121 PF--APISQ-PKKKTSSGSGRPRGRPPKYPKPAPTSAPVA-GPPRGRGRPPK---VKPAV 160
                P+ Q P       +G+P     +   P P   PV     RG GRP K     PA 
Sbjct: 190 ESQPQPLQQLPPTNQVQANGQPIWEQQQVQSPVPVPTPVTESAKRGPGRPRKNGSAAPAT 249

[Close]

BLAST of MS021500 vs. TAIR 10
Match: AT1G48620.1 (high mobility group A5 )

HSP 1 Score: 50.8 bits (120), Expect = 1.2e-06
Identity = 70/234 (29.91%), Postives = 98/234 (41.88%), Query Frame = 0


Query: 2   MIMSAIDAINDKNGANKSAITKQIESTYGDLPPAFTTLLSHHLDVMKQTGQLLFLKNNY- 61
           MI +AI A+N+ +G++K AI++ IE  Y  +P A   LL+HHL  +K +G L+ +K +Y 
Sbjct: 81  MICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILVMVKKSYK 140

Query: 62  MRPDPNAPP------------------------------------KRGRGRPPKPK---- 121
           +   P  PP                                    KRGRGRPPK K    
Sbjct: 141 LASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPDPVLASSTPQTIKRGRGRPPKAKPDVV 200

Query: 122 ----------------VPL---------PPGTVVSPPRPRGRPP-KP-KDPFAPISQPKK 153
                           +P+         PP   + P +P  RPP +P KD  +P  +P  
Sbjct: 201 QPQPLTNGKLTWEQSELPVSRPEEIQIQPPQLPLQPQQPVKRPPGRPRKDGTSPTVKPAA 260

The following BLAST results are available for this feature:

BLAST of MS021500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150116.1	7.7e-77	92.59	HMG-Y-related protein A [Cucumis sativus] >KGN51483.1 hypothetical protein Csa_0...	[more]
XP_008466945.1	1.0e-76	92.59	PREDICTED: HMG-Y-related protein A [Cucumis melo] >KAA0046335.1 HMG-Y-related pr...	[more]
XP_038906720.1	1.3e-76	91.30	HMG-Y-related protein A-like [Benincasa hispida]	[more]
XP_023545599.1	3.2e-75	90.06	HMG-Y-related protein B-like [Cucurbita pepo subsp. pepo]	[more]
XP_022953026.1	3.2e-75	90.06	HMG-Y-related protein B-like [Cucurbita moschata] >XP_022990103.1 HMG-Y-related ...	[more]

BLAST of MS021500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q00423	5.2e-44	62.50	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q43386	4.9e-42	59.12	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]
Q10370	1.7e-39	61.84	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q9FYS5	1.1e-30	52.02	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]

BLAST of MS021500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPG4	3.7e-77	92.59	H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G568810 PE=4 SV...	[more]
A0A5D3E3W3	4.8e-77	92.59	HMG-Y-related protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CSD8	4.8e-77	92.59	HMG-Y-related protein A OS=Cucumis melo OX=3656 GN=LOC103504324 PE=4 SV=1	[more]
A0A6J1JSA2	1.6e-75	90.06	HMG-Y-related protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111487099 PE=4 SV...	[more]
A0A6J1GLV6	1.6e-75	90.06	HMG-Y-related protein B-like OS=Cucurbita moschata OX=3662 GN=LOC111455542 PE=4 ...	[more]

BLAST of MS021500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14900.1	3.5e-43	59.12	high mobility group A	[more]
AT3G18035.1	1.8e-07	33.33	winged-helix DNA-binding transcription factor family protein	[more]
AT1G48620.1	1.2e-06	29.91	high mobility group A5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 70..80 score: 77.27 coord: 90..101 score: 65.97 coord: 118..128 score: 69.32
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 143..155 e-value: 1.1 score: 15.1 coord: 120..132 e-value: 2.2 score: 13.3 coord: 70..82 e-value: 11.0 score: 9.3 coord: 92..104 e-value: 23.0 score: 7.6
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 83..94 score: 41.67 coord: 68..80 score: 65.93 coord: 109..128 score: 45.71 coord: 94..105 score: 50.0
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 1..59 e-value: 2.7E-10 score: 50.2
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 1..57 e-value: 4.4E-6 score: 27.0
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 1..64 score: 18.063643
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..73 e-value: 1.9E-9 score: 39.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..149
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 1..158
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF103	HMG-Y-RELATED PROTEIN A	coord: 1..158
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021500.1	MS021500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000785	chromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding