MS021445 (gene) Bitter gourd (TR) v1

Overview
NameMS021445
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold381: 31974 .. 32195 (+)
RNA-Seq ExpressionMS021445
SyntenyMS021445
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGAAAATGAATGCATAATTGGAAGGATTGGGGAAGAAGAAGAAACTCATTTCGAAATCTATGTGAATCCAAAAAAATTTTTCTATCTTTTGCCAGCTCGTTCGAAGAGGGTATGGTTTTTCAAGTCACTTGAATATTCAACTGGCAGCGTGGGTACTATAATCGCTGCCCCTATTGGACTGTATGCTCAAATGTGGGTATTTTTCCCCCACGAAACCCCT

mRNA sequence

CAGGAAAATGAATGCATAATTGGAAGGATTGGGGAAGAAGAAGAAACTCATTTCGAAATCTATGTGAATCCAAAAAAATTTTTCTATCTTTTGCCAGCTCGTTCGAAGAGGGTATGGTTTTTCAAGTCACTTGAATATTCAACTGGCAGCGTGGGTACTATAATCGCTGCCCCTATTGGACTGTATGCTCAAATGTGGGTATTTTTCCCCCACGAAACCCCT

Coding sequence (CDS)

CAGGAAAATGAATGCATAATTGGAAGGATTGGGGAAGAAGAAGAAACTCATTTCGAAATCTATGTGAATCCAAAAAAATTTTTCTATCTTTTGCCAGCTCGTTCGAAGAGGGTATGGTTTTTCAAGTCACTTGAATATTCAACTGGCAGCGTGGGTACTATAATCGCTGCCCCTATTGGACTGTATGCTCAAATGTGGGTATTTTTCCCCCACGAAACCCCT

Protein sequence

QENECIIGRIGEEEETHFEIYVNPKKFFYLLPARSKRVWFFKSLEYSTGSVGTIIAAPIGLYAQMWVFFPHETP
Homology
BLAST of MS021445 vs. NCBI nr
Match: XP_022156121.1 (uncharacterized protein LOC111023086 [Momordica charantia])

HSP 1 Score: 159.5 bits (402), Expect = 1.1e-35
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1   QENECIIGRIGEEEETHFEIYVNPKKFFYLLPARSKRVWFFKSLEYSTGSVGTIIAAPIG 60
           +ENECIIGRIGEEEETHFEIYVNPKKFFYLLPARSKRVWFFKSLEYSTGSVGTIIAAPIG
Sbjct: 218 EENECIIGRIGEEEETHFEIYVNPKKFFYLLPARSKRVWFFKSLEYSTGSVGTIIAAPIG 277

Query: 61  LYAQMWVFFPHETP 75
           LYAQMWVFFPHETP
Sbjct: 278 LYAQMWVFFPHETP 291

BLAST of MS021445 vs. NCBI nr
Match: XP_031744051.1 (uncharacterized protein LOC116404769 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 0

Query: 3   NECIIGRIGEEEETHFEIYVNPKKFFYLLPARSKRVWFFKSLEYSTGSVGTIIAAPIGLY 62
           +ECIIG + +EEE+ F +Y+NPK  F  L  +S+R+W FKS      +  +II APIGLY
Sbjct: 186 DECIIGGVADEEESRFFVYLNPKILFRDLANKSERIWMFKS-----PNSYSIIVAPIGLY 245

Query: 63  AQMWVFFP 71
           AQ  V+FP
Sbjct: 246 AQFCVYFP 248

BLAST of MS021445 vs. NCBI nr
Match: KGN45641.1 (hypothetical protein Csa_005727 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 0

Query: 3   NECIIGRIGEEEETHFEIYVNPKKFFYLLPARSKRVWFFKSLEYSTGSVGTIIAAPIGLY 62
           +ECIIG + +EEE+ F +Y+NPK  F  L  +S+R+W FKS      +  +II APIGLY
Sbjct: 97  DECIIGGVADEEESRFFVYLNPKILFRDLANKSERIWMFKS-----PNSYSIIVAPIGLY 156

Query: 63  AQMWVFFP 71
           AQ  V+FP
Sbjct: 157 AQFCVYFP 159

BLAST of MS021445 vs. NCBI nr
Match: XP_031744098.1 (uncharacterized protein LOC116404778 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 0

Query: 1   QENECIIGRIGEEEETHFEIYVNPKKFFYLLPARSKRVWFFKSLEYSTGSVGTIIAAPIG 60
           +EN+C+IG + E EE  F I V+P  FF  L ++SKRVWF    ++S      I+  P+G
Sbjct: 142 EENQCVIGGVEEGEEFRFIITVHPLVFFLDLSSQSKRVWFLMQRDFS-----CIMILPLG 201

Query: 61  LYAQMWVFFPHE 73
           L+ Q WV+FP +
Sbjct: 202 LWQQFWVYFPSQ 208

BLAST of MS021445 vs. NCBI nr
Match: XP_008458679.1 (PREDICTED: uncharacterized protein LOC103498007 [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 8.6e-07
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 1   QENECIIGRIGEEEETHFEIYVNPKKFFYLLPARSKRVWFFKSLEYSTGSVGTIIAAPIG 60
           +E+EC+IG + E EE  F I VNP  FF  L  +SKRVWF    ++S      ++  P+G
Sbjct: 181 EEDECVIGGVEEGEEFRFIITVNPLVFFLDLSNQSKRVWFLMQSDFS-----CMMVLPLG 240

Query: 61  LYAQMWVFFPHE 73
           ++ Q W++FP +
Sbjct: 241 MWHQFWIYFPSQ 247

BLAST of MS021445 vs. ExPASy TrEMBL
Match: A0A6J1DTW1 (uncharacterized protein LOC111023086 OS=Momordica charantia OX=3673 GN=LOC111023086 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.5e-36
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0

Query: 1   QENECIIGRIGEEEETHFEIYVNPKKFFYLLPARSKRVWFFKSLEYSTGSVGTIIAAPIG 60
           +ENECIIGRIGEEEETHFEIYVNPKKFFYLLPARSKRVWFFKSLEYSTGSVGTIIAAPIG
Sbjct: 218 EENECIIGRIGEEEETHFEIYVNPKKFFYLLPARSKRVWFFKSLEYSTGSVGTIIAAPIG 277

Query: 61  LYAQMWVFFPHETP 75
           LYAQMWVFFPHETP
Sbjct: 278 LYAQMWVFFPHETP 291

BLAST of MS021445 vs. ExPASy TrEMBL
Match: A0A0A0KCY3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002350 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.5e-09
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 0

Query: 3   NECIIGRIGEEEETHFEIYVNPKKFFYLLPARSKRVWFFKSLEYSTGSVGTIIAAPIGLY 62
           +ECIIG + +EEE+ F +Y+NPK  F  L  +S+R+W FKS      +  +II APIGLY
Sbjct: 97  DECIIGGVADEEESRFFVYLNPKILFRDLANKSERIWMFKS-----PNSYSIIVAPIGLY 156

Query: 63  AQMWVFFP 71
           AQ  V+FP
Sbjct: 157 AQFCVYFP 159

BLAST of MS021445 vs. ExPASy TrEMBL
Match: A0A0A0K9W8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002330 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.3e-08
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = 0

Query: 1   QENECIIGRIGEEEETHFEIYVNPKKFFYLLPARSKRVWFFKSLEYSTGSVGTIIAAPIG 60
           +EN+C+IG + E EE  F I V+P  FF  L ++SKRVWF    ++S      I+  P+G
Sbjct: 181 EENQCVIGGVEEGEEFRFIITVHPLVFFLDLSSQSKRVWFLMQRDFS-----CIMILPLG 240

Query: 61  LYAQMWVFFPHE 73
           L+ Q WV+FP +
Sbjct: 241 LWQQFWVYFPSQ 247

BLAST of MS021445 vs. ExPASy TrEMBL
Match: A0A1S3C901 (uncharacterized protein LOC103498007 OS=Cucumis melo OX=3656 GN=LOC103498007 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.1e-07
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 1   QENECIIGRIGEEEETHFEIYVNPKKFFYLLPARSKRVWFFKSLEYSTGSVGTIIAAPIG 60
           +E+EC+IG + E EE  F I VNP  FF  L  +SKRVWF    ++S      ++  P+G
Sbjct: 181 EEDECVIGGVEEGEEFRFIITVNPLVFFLDLSNQSKRVWFLMQSDFS-----CMMVLPLG 240

Query: 61  LYAQMWVFFPHE 73
           ++ Q W++FP +
Sbjct: 241 MWHQFWIYFPSQ 247

BLAST of MS021445 vs. ExPASy TrEMBL
Match: A0A6J1HJS7 (uncharacterized protein LOC111464207 OS=Cucurbita moschata OX=3662 GN=LOC111464207 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.1e-07
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 0

Query: 1   QENECIIGRIGEEEETHFEIYVNPKKFFYLLPARSKRVWFFKSLEYSTGSVGTIIAAPIG 60
           ++ +CIIG + E++E  F I + P  FF+ L  +S RVW FKS   S+  +      P+G
Sbjct: 181 RKKQCIIGDVSEKDEIKFVITLQPTMFFHDLSHQSARVWLFKSSNSSSAMI-----VPVG 240

Query: 61  LYAQMWVFFP 71
           +Y Q WV+FP
Sbjct: 241 MYTQFWVYFP 245

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156121.11.1e-3598.65uncharacterized protein LOC111023086 [Momordica charantia][more]
XP_031744051.11.6e-0850.00uncharacterized protein LOC116404769 [Cucumis sativus][more]
KGN45641.11.6e-0850.00hypothetical protein Csa_005727 [Cucumis sativus][more]
XP_031744098.11.7e-0743.06uncharacterized protein LOC116404778 [Cucumis sativus][more]
XP_008458679.18.6e-0740.28PREDICTED: uncharacterized protein LOC103498007 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DTW15.5e-3698.65uncharacterized protein LOC111023086 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A0A0KCY37.5e-0950.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002350 PE=4 SV=1[more]
A0A0A0K9W88.3e-0843.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G002330 PE=4 SV=1[more]
A0A1S3C9014.1e-0740.28uncharacterized protein LOC103498007 OS=Cucumis melo OX=3656 GN=LOC103498007 PE=... [more]
A0A6J1HJS77.1e-0740.00uncharacterized protein LOC111464207 OS=Cucurbita moschata OX=3662 GN=LOC1114642... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021445.1MS021445.1mRNA