MS021398 (gene) Bitter gourd (TR) v1

Overview
NameMS021398
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold358: 1689708 .. 1689989 (+)
RNA-Seq ExpressionMS021398
SyntenyMS021398
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CATGATAATGATGGTGTTCGACGGACCGAATCCTTTGGATATTGTTCAGATCAGGGCTACTCCTTGATGATGGAGAAGCGGCGGCTGTTTCTGAGGAGCTATCAGTTCTGCAGGAAAAGGAGTGTGCCCGAGAAGATCAAGTTTTTCGTCCTCAAACTGAAGAGAATTATATGGGCGAGGCTACGCCCTGCGCTTAGGATCTCCTGCTCCCGCACCCGCCGGAGAAGACCATTTCTTCGCCTCCACCACCGCCGCATTCACTCCCTCTCTTGTTCCCTCTTC

mRNA sequence

CATGATAATGATGGTGTTCGACGGACCGAATCCTTTGGATATTGTTCAGATCAGGGCTACTCCTTGATGATGGAGAAGCGGCGGCTGTTTCTGAGGAGCTATCAGTTCTGCAGGAAAAGGAGTGTGCCCGAGAAGATCAAGTTTTTCGTCCTCAAACTGAAGAGAATTATATGGGCGAGGCTACGCCCTGCGCTTAGGATCTCCTGCTCCCGCACCCGCCGGAGAAGACCATTTCTTCGCCTCCACCACCGCCGCATTCACTCCCTCTCTTGTTCCCTCTTC

Coding sequence (CDS)

CATGATAATGATGGTGTTCGACGGACCGAATCCTTTGGATATTGTTCAGATCAGGGCTACTCCTTGATGATGGAGAAGCGGCGGCTGTTTCTGAGGAGCTATCAGTTCTGCAGGAAAAGGAGTGTGCCCGAGAAGATCAAGTTTTTCGTCCTCAAACTGAAGAGAATTATATGGGCGAGGCTACGCCCTGCGCTTAGGATCTCCTGCTCCCGCACCCGCCGGAGAAGACCATTTCTTCGCCTCCACCACCGCCGCATTCACTCCCTCTCTTGTTCCCTCTTC

Protein sequence

HDNDGVRRTESFGYCSDQGYSLMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPALRISCSRTRRRRPFLRLHHRRIHSLSCSLF
Homology
BLAST of MS021398 vs. NCBI nr
Match: KAG6590523.1 (hypothetical protein SDJN03_15946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 4.1e-14
Identity = 57/98 (58.16%), Postives = 69/98 (70.41%), Query Frame = 0

Query: 1   HDNDGVRRTESFG-YCSDQGY-SLMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIW 60
           H +    R+ES   Y SDQGY S +MEKR+LFLRSYQFC K+SVP+KI   +LK+KR+IW
Sbjct: 14  HHSHVDHRSESLRYYYSDQGYSSTLMEKRQLFLRSYQFCTKKSVPQKINASLLKIKRVIW 73

Query: 61  ARLRPALRISC-----SRTRRRRPFLRLHHRRIHSLSC 92
            RL+  L  SC     SR+RRRR  +RLHH  IHSLSC
Sbjct: 74  VRLKNLLLHSCRLRNASRSRRRRS-VRLHH-PIHSLSC 109

BLAST of MS021398 vs. NCBI nr
Match: XP_031247927.1 (uncharacterized protein LOC116105660 [Pistacia vera])

HSP 1 Score: 77.0 bits (188), Expect = 9.5e-11
Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = 0

Query: 8   RTESFGYCSDQGYSLMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPALRI 67
           R++SFGY      ++MMEKR+LFLRSYQFCRK+SV E+IK  ++++KR++W +LR A +I
Sbjct: 15  RSDSFGYMEQS--NVMMEKRQLFLRSYQFCRKKSVSERIKRSLIRVKRVMWLKLRSARKI 74

Query: 68  S---CSRTR-----RRRPFLR--------LHHRRIHSLSCSLF 95
                SR R     RRR F+R        LHH   HS SCS +
Sbjct: 75  RKLVWSRLRWSFNYRRRRFVRLVNHNYHHLHHHHHHSSSCSFW 115

BLAST of MS021398 vs. NCBI nr
Match: KAE8000029.1 (hypothetical protein FH972_004401 [Carpinus fangiana])

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-10
Identity = 47/82 (57.32%), Postives = 57/82 (69.51%), Query Frame = 0

Query: 8  RTESFGYCSDQGYSLMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPALRI 67
          R ESFGY   +   +MMEKR+LFLRSYQFCRKRS+ E+IK  ++++KR+I  RLR A RI
Sbjct: 14 RNESFGYYIAEQNYMMMEKRQLFLRSYQFCRKRSLSERIKRSLVRVKRVICLRLRSACRI 73

Query: 68 S---CSRTR-----RRRPFLRL 82
              CSR R     RRR FLRL
Sbjct: 74 RKLVCSRLRYGFYYRRRRFLRL 95

BLAST of MS021398 vs. NCBI nr
Match: XP_023885587.1 (uncharacterized protein LOC111997696 [Quercus suber])

HSP 1 Score: 75.5 bits (184), Expect = 2.8e-10
Identity = 49/95 (51.58%), Postives = 65/95 (68.42%), Query Frame = 0

Query: 8   RTESFGYCSDQGYSLMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPALR- 67
           R+ESFGY S+Q Y+ MMEKR+LFLRSYQFCRKRS+ E++K   +++KR+I  RLR A R 
Sbjct: 16  RSESFGYYSEQNYT-MMEKRQLFLRSYQFCRKRSLSERLKGSFIRVKRVICLRLRCARRF 75

Query: 68  --ISCSRTR-----RRRPFLRLHHRRIHSLSCSLF 95
             + CS  R     RRR FLRL + + +  S + F
Sbjct: 76  RKLVCSGLRYGFYYRRRKFLRLVNNKKNYSSSNCF 109

BLAST of MS021398 vs. NCBI nr
Match: XP_017418063.1 (PREDICTED: uncharacterized protein LOC108328681 [Vigna angularis])

HSP 1 Score: 75.5 bits (184), Expect = 2.8e-10
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = 0

Query: 8   RTESFG-YCSDQGYS-LMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPA- 67
           R+ESFG Y  D  +S  MMEKR+LFLRSYQFCRK+S+ E++K  ++++K+I+W RLR A 
Sbjct: 11  RSESFGHYYPDAEHSYTMMEKRQLFLRSYQFCRKKSLKERVKGSLVRVKKILWLRLRSAK 70

Query: 68  ---------LRISCSRTRRRRPFLRL---HHRRIHSLSC 92
                    +RI C    RRR F RL   H+R+I S SC
Sbjct: 71  KLRRLVFSRIRIKCGFYYRRRRFSRLLNAHNRKIDSSSC 109

BLAST of MS021398 vs. ExPASy TrEMBL
Match: A0A0L9U9C1 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g270300 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = 0

Query: 8   RTESFG-YCSDQGYS-LMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPA- 67
           R+ESFG Y  D  +S  MMEKR+LFLRSYQFCRK+S+ E++K  ++++K+I+W RLR A 
Sbjct: 27  RSESFGHYYPDAEHSYTMMEKRQLFLRSYQFCRKKSLKERVKGSLVRVKKILWLRLRSAK 86

Query: 68  ---------LRISCSRTRRRRPFLRL---HHRRIHSLSC 92
                    +RI C    RRR F RL   H+R+I S SC
Sbjct: 87  KLRRLVFSRIRIKCGFYYRRRRFSRLLNAHNRKIDSSSC 125

BLAST of MS021398 vs. ExPASy TrEMBL
Match: A0A0S3S014 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G379100 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 49/99 (49.49%), Postives = 65/99 (65.66%), Query Frame = 0

Query: 8   RTESFG-YCSDQGYS-LMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPA- 67
           R+ESFG Y  D  +S  MMEKR+LFLRSYQFCRK+S+ E++K  ++++K+I+W RLR A 
Sbjct: 27  RSESFGHYYPDAEHSYTMMEKRQLFLRSYQFCRKKSLKERVKGSLVRVKKILWLRLRSAK 86

Query: 68  ---------LRISCSRTRRRRPFLRL---HHRRIHSLSC 92
                    +RI C    RRR F RL   H+R+I S SC
Sbjct: 87  KLRRLVFSRIRIKCGFYYRRRRFSRLLNAHNRKIDSSSC 125

BLAST of MS021398 vs. ExPASy TrEMBL
Match: A0A1S3TPK1 (uncharacterized protein LOC106757494 isoform X1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106757494 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 0

Query: 8   RTESFG-YCSDQGYS-LMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPA- 67
           R+ESFG Y  D  +S  MMEKR+LFLRSYQFCRK+S+ E++K  ++++K+++W RLR A 
Sbjct: 28  RSESFGHYYPDAEHSYTMMEKRQLFLRSYQFCRKKSLKERVKGSLVRVKKVLWLRLRSAK 87

Query: 68  ---------LRISCSRTRRRRPFLRL---HHRRIHSLSC 92
                    +RI C    RRR F RL   H+R+I S SC
Sbjct: 88  KLRRLVFSRIRIKCGFYYRRRRFSRLLNAHNRKIDSSSC 126

BLAST of MS021398 vs. ExPASy TrEMBL
Match: A0A1S3TPD2 (uncharacterized protein LOC106757494 isoform X2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106757494 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 0

Query: 8   RTESFG-YCSDQGYS-LMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPA- 67
           R+ESFG Y  D  +S  MMEKR+LFLRSYQFCRK+S+ E++K  ++++K+++W RLR A 
Sbjct: 11  RSESFGHYYPDAEHSYTMMEKRQLFLRSYQFCRKKSLKERVKGSLVRVKKVLWLRLRSAK 70

Query: 68  ---------LRISCSRTRRRRPFLRL---HHRRIHSLSC 92
                    +RI C    RRR F RL   H+R+I S SC
Sbjct: 71  KLRRLVFSRIRIKCGFYYRRRRFSRLLNAHNRKIDSSSC 109

BLAST of MS021398 vs. ExPASy TrEMBL
Match: V7D0U9 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G220700g PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 0

Query: 8   RTESFG-YCSDQGYS-LMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPA- 67
           R+ESFG Y  D  +S  MMEKR+LFLRSYQFCRK+S+ E++K  ++++K+++W RLR A 
Sbjct: 30  RSESFGHYYPDAEHSYTMMEKRQLFLRSYQFCRKKSLKERVKGSLVRVKKVLWLRLRSAK 89

Query: 68  ---------LRISCSRTRRRRPFLRL---HHRRIHSLSC 92
                    +RI C    RRR F RL   H+R+I S SC
Sbjct: 90  KLRRLVFSRIRIKCGFYYRRRRFSRLLNAHNRKIDSSSC 128

BLAST of MS021398 vs. TAIR 10
Match: AT5G26731.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 6.1e-08
Identity = 40/86 (46.51%), Postives = 49/86 (56.98%), Query Frame = 0

Query: 6  VRRTESFGYCSDQGYSLMMEKRRLFLRSYQFCRKRSVPEKIKFFVLKLKRIIWARLRPA- 65
          V R+ S G      Y   MEKR+LFLRSYQF RK+S  EK+   V ++KR++  RLR A 
Sbjct: 6  VFRSTSGGDYYGAPYGEYMEKRQLFLRSYQFSRKQSFAEKVSRSVTRVKRVVLTRLRSAP 65

Query: 66 --LRISCSRTR-----RRRPFLRLHH 84
             R+  SR R     RRR F RL H
Sbjct: 66 KLKRVVWSRLRSAFYYRRRRFFRLLH 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6590523.14.1e-1458.16hypothetical protein SDJN03_15946, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_031247927.19.5e-1147.57uncharacterized protein LOC116105660 [Pistacia vera][more]
KAE8000029.12.1e-1057.32hypothetical protein FH972_004401 [Carpinus fangiana][more]
XP_023885587.12.8e-1051.58uncharacterized protein LOC111997696 [Quercus suber][more]
XP_017418063.12.8e-1049.49PREDICTED: uncharacterized protein LOC108328681 [Vigna angularis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0L9U9C11.3e-1049.49Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g270300 PE... [more]
A0A0S3S0141.3e-1049.49Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G... [more]
A0A1S3TPK11.7e-1048.48uncharacterized protein LOC106757494 isoform X1 OS=Vigna radiata var. radiata OX... [more]
A0A1S3TPD21.7e-1048.48uncharacterized protein LOC106757494 isoform X2 OS=Vigna radiata var. radiata OX... [more]
V7D0U91.7e-1048.48Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G220700g PE=4 ... [more]
Match NameE-valueIdentityDescription
AT5G26731.16.1e-0846.51unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021398.1MS021398.1mRNA