MS021369 (gene) Bitter gourd (TR) v1

Overview
NameMS021369
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold358: 1461839 .. 1462030 (-)
RNA-Seq ExpressionMS021369
SyntenyMS021369
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGAAATCTCTCTGGAAACACAACCGCCGAGAAAAAGCAAGGAATTTTCCCCCACCGTGTGGTCGGCGGTCTTCCGCCGTCAAGTTATCCCAAACCTCCGTCAAATCCCGCGGTACAACAACGACCTTCCCGCCGTTACCGTTAAATCCCACAAGAACAATAAAAACCCTCCATTTCTCTCAACCTTTTCC

mRNA sequence

AGAGAAATCTCTCTGGAAACACAACCGCCGAGAAAAAGCAAGGAATTTTCCCCCACCGTGTGGTCGGCGGTCTTCCGCCGTCAAGTTATCCCAAACCTCCGTCAAATCCCGCGGTACAACAACGACCTTCCCGCCGTTACCGTTAAATCCCACAAGAACAATAAAAACCCTCCATTTCTCTCAACCTTTTCC

Coding sequence (CDS)

AGAGAAATCTCTCTGGAAACACAACCGCCGAGAAAAAGCAAGGAATTTTCCCCCACCGTGTGGTCGGCGGTCTTCCGCCGTCAAGTTATCCCAAACCTCCGTCAAATCCCGCGGTACAACAACGACCTTCCCGCCGTTACCGTTAAATCCCACAAGAACAATAAAAACCCTCCATTTCTCTCAACCTTTTCC

Protein sequence

REISLETQPPRKSKEFSPTVWSAVFRRQVIPNLRQIPRYNNDLPAVTVKSHKNNKNPPFLSTFS
Homology
BLAST of MS021369 vs. NCBI nr
Match: KAE8650678.1 (hypothetical protein Csa_010607, partial [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 7.4e-07
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 3  ISLETQPPRKSKEFSPT----VWSAVFRRQVIPNLRQIPRYNNDLPAVTVKSHKNNKNP- 62
          +  + Q  RK++EFS +    V   VFRRQV+ NLR  PRYNNDL +VTV S +NNK P 
Sbjct: 4  VKKKRQYSRKNQEFSDSFPHRVVGEVFRRQVLSNLRHSPRYNNDLLSVTVNSRQNNKTPL 63

Query: 63 PFLSTFS 65
          PF+S FS
Sbjct: 64 PFISIFS 70

BLAST of MS021369 vs. NCBI nr
Match: KAG7015226.1 (hypothetical protein SDJN02_22859, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.5 bits (145), Expect = 6.3e-06
Identity = 31/50 (62.00%), Postives = 34/50 (68.00%), Query Frame = 0

Query: 16 FSPTVWSAVFRRQVIPNLRQIPRYNNDLPAVTVKSHKNNKN-PPFLSTFS 65
          F   V     RRQV+   RQ P+YNNDLPAVTVKSHKNNK  PPF+  FS
Sbjct: 4  FPHRVVGEAIRRQVLSQHRQTPQYNNDLPAVTVKSHKNNKTPPPFIVPFS 53

BLAST of MS021369 vs. ExPASy TrEMBL
Match: A0A0A0LBC3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G405520 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.6e-07
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 3  ISLETQPPRKSKEFSPT----VWSAVFRRQVIPNLRQIPRYNNDLPAVTVKSHKNNKNP- 62
          +  + Q  RK++EFS +    V   VFRRQV+ NLR  PRYNNDL +VTV S +NNK P 
Sbjct: 4  VKKKRQYSRKNQEFSDSFPHRVVGEVFRRQVLSNLRHSPRYNNDLLSVTVNSRQNNKTPL 63

Query: 63 PFLSTFS 65
          PF+S FS
Sbjct: 64 PFISIFS 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650678.17.4e-0753.73hypothetical protein Csa_010607, partial [Cucumis sativus][more]
KAG7015226.16.3e-0662.00hypothetical protein SDJN02_22859, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LBC33.6e-0753.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G405520 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021369.1MS021369.1mRNA