MS021362 (gene) Bitter gourd (TR) v1

Overview


Name	MS021362
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	glycine-rich RNA-binding protein 4, mitochondrial
Location	scaffold358: 1411780 .. 1412610 (+)
RNA-Seq Expression	MS021362
Synteny	MS021362

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTCAGATCGGCGGCGGCGGCGGCTCCTCGGAGTTTGAGGCGGCTTCTTTCTCGTACTTCAACTTTTACTCCATCGATGATCTCGCACTCTATTCGGGATTGGGAGAAACCGGAGCCGAGCGCGAATTCCTTCGTTTCTGGCCGGCTGTTCTCCGGCGCTTCAACCTCCAGTTTCATTCCTCCGCCGCTCCCTCCGTCCGCTCAGCAGCGTGAGAAGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGTAACTCAATTCTTTCTTAATCTTGATACCTTTCGATTATTTGTTTTACTGTATCTCGGGTGTGCGTTTTATTATTCGCTCATTTTCTGGTCGTGAATCTGTTAATATTGTGTTTCAAGGTTCTGTTTTGATAGTATGAGGTGGCTATCCGTGCTCCGAGAAGGGCGTTGGCCTCCTCTGCTTGCAAGGGAAATTTTGCTGTGAATGTGTTGAACTGCCTGATTGTTTATAAGTGCAGTTTATTGTTGTTGCCAACAAAGAACTCTGTTTTTCATGTGATGTCGATATTTTATCTTCTTTCAGGCCTCAGTAAACGCACTACTACCGAAAAGCTTCATGAAACCTTCGCACAGTTTGGTGAAGTTGTTCATGGTCTGTACAATTGTTCGTTCTCTCTGCTCCGCGTTTGTTTGATTTGTGTGTTAGGCCTTATATGAGTTTATTCTTTAACTTTTCCCCTTCTGTTTTCAGCTAGAGTTGTGACTGATCGAGTGACAGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCAATTTGGAAGATGCGGCTAAAGGCATAGAGGGTATGGATGGAAAG

mRNA sequence

ATGGCTCTCAGATCGGCGGCGGCGGCGGCTCCTCGGAGTTTGAGGCGGCTTCTTTCTCGTACTTCAACTTTTACTCCATCGATGATCTCGCACTCTATTCGGGATTGGGAGAAACCGGAGCCGAGCGCGAATTCCTTCGTTTCTGGCCGGCTGTTCTCCGGCGCTTCAACCTCCAGTTTCATTCCTCCGCCGCTCCCTCCGTCCGCTCAGCAGCGTGAGAAGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACTACCGAAAAGCTTCATGAAACCTTCGCACAGTTTGGTGAAGTTGTTCATGCTAGAGTTGTGACTGATCGAGTGACAGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCAATTTGGAAGATGCGGCTAAAGGCATAGAGGGTATGGATGGAAAG

Coding sequence (CDS)

ATGGCTCTCAGATCGGCGGCGGCGGCGGCTCCTCGGAGTTTGAGGCGGCTTCTTTCTCGTACTTCAACTTTTACTCCATCGATGATCTCGCACTCTATTCGGGATTGGGAGAAACCGGAGCCGAGCGCGAATTCCTTCGTTTCTGGCCGGCTGTTCTCCGGCGCTTCAACCTCCAGTTTCATTCCTCCGCCGCTCCCTCCGTCCGCTCAGCAGCGTGAGAAGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACTACCGAAAAGCTTCATGAAACCTTCGCACAGTTTGGTGAAGTTGTTCATGCTAGAGTTGTGACTGATCGAGTGACAGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCAATTTGGAAGATGCGGCTAAAGGCATAGAGGGTATGGATGGAAAG

Protein sequence

MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK

Homology

[Close]

BLAST of MS021362 vs. NCBI nr
Match: XP_022139714.1 (organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia])

HSP 1 Score: 271.6 bits (693), Expect = 4.0e-69
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSF 60
           MALRSAAAAAPRSLRRLLSRTSTFTPS ISHSIRDWEKPEPSANSFVS RLFSGASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSTISHSIRDWEKPEPSANSFVSVRLFSGASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 144
           GFGFVKYANLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYANLEDAAKGIEGMDGK 143

[Close]

BLAST of MS021362 vs. NCBI nr
Match: XP_038896843.1 (organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 238.4 bits (607), Expect = 3.8e-59
Identity = 124/143 (86.71%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSF 60
           MALRSAAAAAPRSLRRL++ TST T  +IS +I DWEK EPS N+F+SGRLFS ASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISQTIHDWEKLEPSTNAFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE+PEPSTNLFVSGLSKRTTTEKLHE FA+FGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 144
           GFGFVKYA LEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of MS021362 vs. NCBI nr
Match: XP_004151968.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KGN57946.1 hypothetical protein Csa_009766 [Cucumis sativus])

HSP 1 Score: 233.4 bits (594), Expect = 1.2e-57
Identity = 121/143 (84.62%), Postives = 130/143 (90.91%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSF 60
           MALRSAAA+APRSLR+L++RTST T  +IS +I DWEKPEPS  +F+SGRLFS ASTSSF
Sbjct: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHE FA+FGEV HARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 144
           GFGFVKYA LEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of MS021362 vs. NCBI nr
Match: XP_022976594.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 230.7 bits (587), Expect = 7.8e-57
Identity = 121/143 (84.62%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSF 60
           MALRSAAAAAPRSLRRL++ TS  T  M   +I D EKP P+ N+FVSGRLFS ASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPMFLQAIHDCEKPTPNTNAFVSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSA QRE+PEPSTNLFVSGLSKRTTTEKLHETFA+FGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAHQREQPEPSTNLFVSGLSKRTTTEKLHETFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 144
           GFGFVKYA LEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of MS021362 vs. NCBI nr
Match: XP_008454580.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 228.4 bits (581), Expect = 3.9e-56
Identity = 118/143 (82.52%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSF 60
           MALRSAAA+APRSLR+L++ TST T  +IS +I DWEKP PS NSF+ GRLFS ASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           +PPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHE F++FGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 144
           GFGFVKYA LEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of MS021362 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-26
Identity = 65/95 (68.42%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 50  RLF-SGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHA 109
           RLF S AS  SF+ P        R + EPSTNLFVSGLSKRTT+E L   FAQFGEV  A
Sbjct: 26  RLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADA 85

Query: 110 RVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK 144
           +VVTDRV+GYSKGFGFV+YA LED+AKGI GMDGK
Sbjct: 86  KVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGK 120

[Close]

BLAST of MS021362 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 43/98 (43.88%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 47  VSGRLFSGA-STSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEV 106
           + G L S   ST S   PP   S        P T L+VSGLS RTT + L +TF QFG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 107 VHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK 144
           +H  +V D+V    KGF F++Y   E+A K I+GM GK
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGK 141

[Close]

BLAST of MS021362 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.7e-10
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 78  STNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGI 137
           ST LF+ GLS  T    L + FA FG+VV A+V+ DR TG S+GFGFV + +   A   I
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 138 EGMDGK 144
             MDGK
Sbjct: 94  SEMDGK 99

[Close]

BLAST of MS021362 vs. ExPASy Swiss-Prot
Match: Q9LU44 (Splicing factor-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=SF1 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.7e-10
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 63  PPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGF 122
           P  PPS +  E     TNL++  L      + L   F+ FGE+V A+V+ DRVTG SKG+
Sbjct: 469 PTKPPSKEYDE-----TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGY 528

Query: 123 GFVKYANLEDAAKGIEGMDG 143
           GFVKYA+++ A   ++ M+G
Sbjct: 529 GFVKYADVQMANTAVQAMNG 543

[Close]

BLAST of MS021362 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-09
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 82  FVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMD 141
           FV GL+  T  E L + FA FG+V+ ++V+TDR TG S+GFGFV +++ +     IE M+
Sbjct: 11  FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70

Query: 142 GK 144
           GK
Sbjct: 71  GK 72

[Close]

BLAST of MS021362 vs. ExPASy TrEMBL
Match: A0A6J1CDT1 (organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111010565 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.9e-69
Identity = 141/143 (98.60%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSF 60
           MALRSAAAAAPRSLRRLLSRTSTFTPS ISHSIRDWEKPEPSANSFVS RLFSGASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSTISHSIRDWEKPEPSANSFVSVRLFSGASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 144
           GFGFVKYANLEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYANLEDAAKGIEGMDGK 143

[Close]

BLAST of MS021362 vs. ExPASy TrEMBL
Match: A0A0A0LD10 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G403980 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.8e-58
Identity = 121/143 (84.62%), Postives = 130/143 (90.91%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSF 60
           MALRSAAA+APRSLR+L++RTST T  +IS +I DWEKPEPS  +F+SGRLFS ASTSSF
Sbjct: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHE FA+FGEV HARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 144
           GFGFVKYA LEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of MS021362 vs. ExPASy TrEMBL
Match: A0A6J1INZ4 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111476943 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.8e-57
Identity = 121/143 (84.62%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSF 60
           MALRSAAAAAPRSLRRL++ TS  T  M   +I D EKP P+ N+FVSGRLFS ASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPMFLQAIHDCEKPTPNTNAFVSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSA QRE+PEPSTNLFVSGLSKRTTTEKLHETFA+FGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAHQREQPEPSTNLFVSGLSKRTTTEKLHETFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 144
           GFGFVKYA LEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of MS021362 vs. ExPASy TrEMBL
Match: A0A5D3DR24 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold668G00050 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.9e-56
Identity = 118/143 (82.52%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSF 60
           MALRSAAA+APRSLR+L++ TST T  +IS +I DWEKP PS NSF+ GRLFS ASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           +PPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHE F++FGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 144
           GFGFVKYA LEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of MS021362 vs. ExPASy TrEMBL
Match: A0A1S3C066 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494967 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.9e-56
Identity = 118/143 (82.52%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLLSRTSTFTPSMISHSIRDWEKPEPSANSFVSGRLFSGASTSSF 60
           MALRSAAA+APRSLR+L++ TST T  +IS +I DWEKP PS NSF+ GRLFS ASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSK 120
           +PPPLPPSAQQRE  EPSTNLFVSGLSKRTTTEKLHE F++FGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYANLEDAAKGIEGMDGK 144
           GFGFVKYA LEDAAKGIEGMDGK
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGK 143

[Close]

BLAST of MS021362 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 120.9 bits (302), Expect = 8.1e-28
Identity = 65/95 (68.42%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 50  RLF-SGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEVVHA 109
           RLF S AS  SF+ P        R + EPSTNLFVSGLSKRTT+E L   FAQFGEV  A
Sbjct: 26  RLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADA 85

Query: 110 RVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK 144
           +VVTDRV+GYSKGFGFV+YA LED+AKGI GMDGK
Sbjct: 86  KVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGK 120

[Close]

BLAST of MS021362 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 77.8 bits (190), Expect = 7.9e-15
Identity = 48/99 (48.48%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 45  SFVSGRLFSGASTSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGE 104
           +FVS      A +SS +    P    +R     S  LFVSGLS+ TT EKL + FA FG+
Sbjct: 2   AFVSSFRRLVAGSSSLLSS--PSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQ 61

Query: 105 VVHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK 144
           +V ARV+TDR +G SKGFGFV YA +EDA K    M+ K
Sbjct: 62  LVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAK 98

[Close]

BLAST of MS021362 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 74.3 bits (181), Expect = 8.7e-14
Identity = 43/98 (43.88%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 47  VSGRLFSGA-STSSFIPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLHETFAQFGEV 106
           + G L S   ST S   PP   S        P T L+VSGLS RTT + L +TF QFG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 107 VHARVVTDRVTGYSKGFGFVKYANLEDAAKGIEGMDGK 144
           +H  +V D+V    KGF F++Y   E+A K I+GM GK
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGK 141

[Close]

BLAST of MS021362 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-11
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 78  STNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGI 137
           ST LF+ GLS  T    L + FA FG+VV A+V+ DR TG S+GFGFV + +   A   I
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 138 EGMDGK 144
             MDGK
Sbjct: 94  SEMDGK 99

[Close]

BLAST of MS021362 vs. TAIR 10
Match: AT4G13850.2 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 64.7 bits (156), Expect = 6.9e-11
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 78  STNLFVSGLSKRTTTEKLHETFAQFGEVVHARVVTDRVTGYSKGFGFVKYANLEDAAKGI 137
           ST LF+ GLS  T    L + FA FG+VV A+V+ DR TG S+GFGFV + +   A   I
Sbjct: 34  STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93

Query: 138 EGMDGK 144
             MDGK
Sbjct: 94  SEMDGK 99

The following BLAST results are available for this feature:

BLAST of MS021362 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139714.1	4.0e-69	98.60	organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia]	[more]
XP_038896843.1	3.8e-59	86.71	organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]	[more]
XP_004151968.1	1.2e-57	84.62	organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KGN5...	[more]
XP_022976594.1	7.8e-57	84.62	organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita maxima]	[more]
XP_008454580.1	3.9e-56	82.52	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]

BLAST of MS021362 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	1.1e-26	68.42	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FX45	1.2e-12	43.88	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9SVM8	9.7e-10	50.00	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9LU44	9.7e-10	42.50	Splicing factor-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=SF1 PE=1 SV=1	[more]
Q99070	1.7e-09	46.77	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]

BLAST of MS021362 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CDT1	1.9e-69	98.60	organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia ...	[more]
A0A0A0LD10	5.8e-58	84.62	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G403980 PE=4 SV...	[more]
A0A6J1INZ4	3.8e-57	84.62	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxim...	[more]
A0A5D3DR24	1.9e-56	82.52	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C066	1.9e-56	82.52	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of MS021362 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54580.1	8.1e-28	68.42	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	7.9e-15	48.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	8.7e-14	43.88	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G13850.1	6.9e-11	50.00	glycine-rich RNA-binding protein 2	[more]
AT4G13850.2	6.9e-11	50.00	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 80..143 e-value: 3.6E-13 score: 59.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 81..143 e-value: 1.4E-18 score: 66.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 79..143 score: 17.165293
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 35..143 e-value: 2.7E-24 score: 87.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..79
None	No IPR available	PANTHER	PTHR15241:SF280	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE	coord: 1..49
None	No IPR available	PANTHER	PTHR15241:SF280	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE	coord: 50..143
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 50..143 coord: 1..49
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 61..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021362.1	MS021362.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding