MS021330 (gene) Bitter gourd (TR) v1

Overview


Name	MS021330
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NAC domain protein
Location	scaffold358: 1116827 .. 1117078 (+)
RNA-Seq Expression	MS021330
Synteny	MS021330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTACAATCTTCGAACAGCAGCCTGGCCGGAGGTCTAACCGCGGCGGCAGATCCACTTGCAGGAGCTTGAGTTTTGGGGGGGTGCTTAGGGGTGCCCGGAATTTGACGGCGGCCGGAGACAAGTGCCGGCGGAATCAGGGGAGCAGAGAGGTGTTGCGAAGGGCGTTGGCGCCGCCGAGCCGGAGACCCACTCTCCGGTGGCTCAATTTCCGGCCCACTCCCAGTCGCCTTTCGAATATGTCCAAGGCT

mRNA sequence

ATGCCTACAATCTTCGAACAGCAGCCTGGCCGGAGGTCTAACCGCGGCGGCAGATCCACTTGCAGGAGCTTGAGTTTTGGGGGGGTGCTTAGGGGTGCCCGGAATTTGACGGCGGCCGGAGACAAGTGCCGGCGGAATCAGGGGAGCAGAGAGGTGTTGCGAAGGGCGTTGGCGCCGCCGAGCCGGAGACCCACTCTCCGGTGGCTCAATTTCCGGCCCACTCCCAGTCGCCTTTCGAATATGTCCAAGGCT

Coding sequence (CDS)

ATGCCTACAATCTTCGAACAGCAGCCTGGCCGGAGGTCTAACCGCGGCGGCAGATCCACTTGCAGGAGCTTGAGTTTTGGGGGGGTGCTTAGGGGTGCCCGGAATTTGACGGCGGCCGGAGACAAGTGCCGGCGGAATCAGGGGAGCAGAGAGGTGTTGCGAAGGGCGTTGGCGCCGCCGAGCCGGAGACCCACTCTCCGGTGGCTCAATTTCCGGCCCACTCCCAGTCGCCTTTCGAATATGTCCAAGGCT

Protein sequence

MPTIFEQQPGRRSNRGGRSTCRSLSFGGVLRGARNLTAAGDKCRRNQGSREVLRRALAPPSRRPTLRWLNFRPTPSRLSNMSKA

Homology

[Close]

BLAST of MS021330 vs. NCBI nr
Match: KGN60027.2 (hypothetical protein Csa_001878 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 5.1e-24
Identity = 66/96 (68.75%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 1  MPTIFEQQPGRR-----------SNRGGRSTCRSLSFGGVLRGARNLTA-AGDKCRRNQG 60
          MPTIF+ QP  R            NR  RSTCRS SFGG++RG RNL A  GD+CRRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALAPPSRRPTLRWLNFRPTPSRLSNMSKA 85
          SREVLRRAL PPSRRPTLRW+NFRPTPSRLS MS A
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 96

[Close]

BLAST of MS021330 vs. NCBI nr
Match: KAA0036871.1 (uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ95931.1 uncharacterized protein E5676_scaffold110G002460 [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 5.1e-24
Identity = 67/96 (69.79%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 1  MPTIFEQQP---------GRRS--NRGGRSTCRSLSFGGVLRGARNLTA-AGDKCRRNQG 60
          MPTIF+ QP         GR +   R  RSTCRSLSFGG++RG RNL A  GD+CRRNQG
Sbjct: 1  MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALAPPSRRPTLRWLNFRPTPSRLSNMSKA 85
          SREVLRRAL PPSRRPTLRW+NFRPTPSRLS MS A
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMA 96

[Close]

BLAST of MS021330 vs. NCBI nr
Match: XP_011652880.1 (uncharacterized protein LOC105435142 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 5.1e-24
Identity = 66/96 (68.75%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 1  MPTIFEQQPGRR-----------SNRGGRSTCRSLSFGGVLRGARNLTA-AGDKCRRNQG 60
          MPTIF+ QP  R            NR  RSTCRS SFGG++RG RNL A  GD+CRRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALAPPSRRPTLRWLNFRPTPSRLSNMSKA 85
          SREVLRRAL PPSRRPTLRW+NFRPTPSRLS MS A
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 96

[Close]

BLAST of MS021330 vs. NCBI nr
Match: KAG6607862.1 (hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037392.1 hypothetical protein SDJN02_01017, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.3 bits (290), Expect = 1.3e-22
Identity = 65/97 (67.01%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 1  MPTIF--EQQPGRRSNRGG-----------RSTCRSLSFGGVLRGARNLTAAGDKCRRNQ 60
          MPTIF  +QQP  R +  G           RS CRSLSFGGV RG RN+TAAGDK RR Q
Sbjct: 1  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTAAGDKLRRLQ 60

Query: 61 GSREVLRRALAPPSRRPTLRWLNFRPTPSRLSNMSKA 85
          G RE+LRRAL PP+RRPTLRWLNFR TPSRLSNMS A
Sbjct: 61 GRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 97

[Close]

BLAST of MS021330 vs. NCBI nr
Match: KAG7024857.1 (hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.3 bits (290), Expect = 1.3e-22
Identity = 63/97 (64.95%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 1  MPTIFEQQP------------GRRSNRGGRSTCRSLSFGGVLRGARN-LTAAGDKCRRNQ 60
          MPTIF+ QP            GR  +R  RSTCRS SF G++R  RN +TA GDK RRNQ
Sbjct: 1  MPTIFQSQPQPDRRPSLAAAAGREPSRSIRSTCRSFSFSGMVRSGRNVMTAGGDKFRRNQ 60

Query: 61 GSREVLRRALAPPSRRPTLRWLNFRPTPSRLSNMSKA 85
          G REVLRRAL PP+R+PTLRWLNFRPTPSRLSNMS A
Sbjct: 61 GRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMA 97

[Close]

BLAST of MS021330 vs. ExPASy TrEMBL
Match: A0A5A7T5L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002460 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.5e-24
Identity = 67/96 (69.79%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 1  MPTIFEQQP---------GRRS--NRGGRSTCRSLSFGGVLRGARNLTA-AGDKCRRNQG 60
          MPTIF+ QP         GR +   R  RSTCRSLSFGG++RG RNL A  GD+CRRNQG
Sbjct: 1  MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALAPPSRRPTLRWLNFRPTPSRLSNMSKA 85
          SREVLRRAL PPSRRPTLRW+NFRPTPSRLS MS A
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMA 96

[Close]

BLAST of MS021330 vs. ExPASy TrEMBL
Match: A0A0A0LD23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.5e-24
Identity = 66/96 (68.75%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 1  MPTIFEQQPGRR-----------SNRGGRSTCRSLSFGGVLRGARNLTA-AGDKCRRNQG 60
          MPTIF+ QP  R            NR  RSTCRS SFGG++RG RNL A  GD+CRRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALAPPSRRPTLRWLNFRPTPSRLSNMSKA 85
          SREVLRRAL PPSRRPTLRW+NFRPTPSRLS MS A
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 96

[Close]

BLAST of MS021330 vs. ExPASy TrEMBL
Match: A0A6N2MHB8 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358945 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.1e-11
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 1   MPTIFEQQPG-----RRSNR------GGRSTCRSLSFGGVLRGARN-LTAAGDKCRRNQG 60
           +P    Q PG     RR+N+      G RSTC   +  G +R +++      D+ RR+Q 
Sbjct: 13  LPIPARQSPGEGIRARRNNQAASISPGPRSTCTCSNRPGSVRCSKHGYLVPSDRLRRHQA 72

Query: 61  SREVLRRALAPPSRRPTLRWLNFRPTPSRLSNMSKA 85
           +RE+LRRALAPP+RR TLRW NF+PTPSRLSNMS A
Sbjct: 73  NREILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

[Close]

BLAST of MS021330 vs. ExPASy TrEMBL
Match: B9N1L2 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G404500 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.5e-10
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 18  RSTCRSLSFGGVLRGARN-LTAAGDKCRRNQGSREVLRRALAPPSRRPTLRWLNFRPTPS 77
           RSTC   +  G +R +++      DK RRNQ + E+LRRALAPP+RR TLRW NF+PTPS
Sbjct: 41  RSTCTCSNRPGSVRCSKHGYLVPSDKLRRNQANTEILRRALAPPNRRLTLRWFNFQPTPS 100

Query: 78  RLSNMSKA 85
           RLSNMS A
Sbjct: 101 RLSNMSMA 108

[Close]

BLAST of MS021330 vs. ExPASy TrEMBL
Match: A0A4U5P590 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000228140 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.5e-10
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 18  RSTCRSLSFGGVLRGARN-LTAAGDKCRRNQGSREVLRRALAPPSRRPTLRWLNFRPTPS 77
           RSTC   +  G +R +++      DK RRNQ + E+LRRALAPP+RR TLRW NF+PTPS
Sbjct: 41  RSTCTCSNRPGSVRCSKHGYLVPSDKLRRNQANTEILRRALAPPNRRLTLRWFNFQPTPS 100

Query: 78  RLSNMSKA 85
           RLSNMS A
Sbjct: 101 RLSNMSMA 108

[Close]

BLAST of MS021330 vs. TAIR 10
Match: AT3G15518.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-09
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 44  RRNQGSREVLRRALAPPSRRPTLRWLNFRPTPSRLSNMS 83
           + + GSREVLRRAL PP RR  LRWLNFRPTPSRL  MS
Sbjct: 66  KASDGSREVLRRALTPPIRRMNLRWLNFRPTPSRLCKMS 104

The following BLAST results are available for this feature:

BLAST of MS021330 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60027.2	5.1e-24	68.75	hypothetical protein Csa_001878 [Cucumis sativus]	[more]
KAA0036871.1	5.1e-24	69.79	uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ9...	[more]
XP_011652880.1	5.1e-24	68.75	uncharacterized protein LOC105435142 [Cucumis sativus]	[more]
KAG6607862.1	1.3e-22	67.01	hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7024857.1	1.3e-22	64.95	hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MS021330 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS021330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5L7	2.5e-24	69.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LD23	2.5e-24	68.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1	[more]
A0A6N2MHB8	4.1e-11	48.96	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358945 PE=4 SV=...	[more]
B9N1L2	3.5e-10	58.82	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G404500 PE=4 ...	[more]
A0A4U5P590	3.5e-10	58.82	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000228140 PE=4 SV=1	[more]

BLAST of MS021330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15518.1	1.7e-09	74.36	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021330.1	MS021330.1	mRNA