MS021252 (gene) Bitter gourd (TR) v1

Overview


Name	MS021252
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ATP synthase subunit beta, chloroplastic
Location	scaffold358: 492786 .. 492920 (+)
RNA-Seq Expression	MS021252
Synteny	MS021252

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTAGAGCGGTAGCTATGAGTGCTACAAATAGTCTAACGAGAGGAATGGAAGTGATTGACACGAGAGATCCTACAAGTGTTCTAGTTGGCGGGATGACTCTCGACCGAATTTTCAACGTTTTGGGAGATAGTCTT

mRNA sequence

GTTAGAGCGGTAGCTATGAGTGCTACAAATAGTCTAACGAGAGGAATGGAAGTGATTGACACGAGAGATCCTACAAGTGTTCTAGTTGGCGGGATGACTCTCGACCGAATTTTCAACGTTTTGGGAGATAGTCTT

Coding sequence (CDS)

GTTAGAGCGGTAGCTATGAGTGCTACAAATAGTCTAACGAGAGGAATGGAAGTGATTGACACGAGAGATCCTACAAGTGTTCTAGTTGGCGGGATGACTCTCGACCGAATTTTCAACGTTTTGGGAGATAGTCTT

Protein sequence

VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGDSL

Homology

[Close]

BLAST of MS021252 vs. NCBI nr
Match: YP_010043943.1 (ATP synthase CF1 beta subunit [Securigera varia] >QPF22173.1 ATP synthase CF1 beta subunit [Securigera varia])

HSP 1 Score: 67.0 bits (162), Expect = 4.7e-08
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1   VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGDSL 46
           +RAVAMSAT+ LTRGMEVIDTR P SV VGG+TL RIFNVLG+ +
Sbjct: 74  IRAVAMSATDGLTRGMEVIDTRAPLSVPVGGVTLGRIFNVLGEPI 118

[Close]

BLAST of MS021252 vs. NCBI nr
Match: ABU75178.1 (AtpB, partial [Picrolemma sprucei])

HSP 1 Score: 66.2 bits (160), Expect = 8.0e-08
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 1   VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGD 44
           VRAVAMSAT+ LTRGMEVIDTR P SV VGG TL RIFNVLG+
Sbjct: 72  VRAVAMSATDGLTRGMEVIDTRAPLSVPVGGATLGRIFNVLGE 114

[Close]

BLAST of MS021252 vs. NCBI nr
Match: YP_009751997.1 (CF1 subunit beta [Cionosicys macranthus] >QIT05238.1 CF1 subunit beta [Cionosicys macranthus])

HSP 1 Score: 66.2 bits (160), Expect = 8.0e-08
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1   VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGDSL 46
           VRAVAMSAT+ LTRGMEV+DTR P SV VGG TL RIFNVLG+ +
Sbjct: 74  VRAVAMSATDGLTRGMEVVDTRAPLSVPVGGATLGRIFNVLGEPI 118

[Close]

BLAST of MS021252 vs. NCBI nr
Match: Q85V50.1 (RecName: Full=ATP synthase subunit beta, chloroplastic; AltName: Full=ATP synthase F1 sector subunit beta; AltName: Full=F-ATPase subunit beta [Pseudogaltonia clavata] >CAD48094.1 ATP synthase beta subunit [Pseudogaltonia clavata])

HSP 1 Score: 66.2 bits (160), Expect = 8.0e-08
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 1   VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGD 44
           VRAVAMSAT+ LTRGMEVIDTR P SV VGG TL RIFNVLG+
Sbjct: 74  VRAVAMSATDGLTRGMEVIDTRAPLSVPVGGATLGRIFNVLGE 116

[Close]

BLAST of MS021252 vs. NCBI nr
Match: AAD37036.1 (ATP synthase beta subunit, partial [Buxus sempervirens])

HSP 1 Score: 66.2 bits (160), Expect = 8.0e-08
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 1  VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGD 44
          VRAVAMSAT+ LTRGMEVIDTR P SV VGG TL RIFNVLG+
Sbjct: 55 VRAVAMSATDGLTRGMEVIDTRAPLSVPVGGATLGRIFNVLGE 97

[Close]

BLAST of MS021252 vs. ExPASy Swiss-Prot
Match: A6MM43 (ATP synthase subunit beta, chloroplastic OS=Buxus microphylla OX=153571 GN=atpB PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-10
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 1   VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGD 44
           VRAVAMSAT+ LTRGMEVIDTR P SV VGG TL RIFNVLG+
Sbjct: 74  VRAVAMSATDGLTRGMEVIDTRAPLSVPVGGATLGRIFNVLGE 116

[Close]

BLAST of MS021252 vs. ExPASy Swiss-Prot
Match: Q4VZI5 (ATP synthase subunit beta, chloroplastic OS=Cucumis sativus OX=3659 GN=atpB PE=3 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-10
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1   VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGDSL 46
           VRAVAMSAT+ LTRGMEV+DTR P SV VGG TL RIFNVLG+ +
Sbjct: 74  VRAVAMSATDGLTRGMEVVDTRAPLSVPVGGATLGRIFNVLGEPI 118

[Close]

BLAST of MS021252 vs. ExPASy Swiss-Prot
Match: Q85V50 (ATP synthase subunit beta, chloroplastic OS=Pseudogaltonia clavata OX=81790 GN=atpB PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-10
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 1   VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGD 44
           VRAVAMSAT+ LTRGMEVIDTR P SV VGG TL RIFNVLG+
Sbjct: 74  VRAVAMSATDGLTRGMEVIDTRAPLSVPVGGATLGRIFNVLGE 116

[Close]

BLAST of MS021252 vs. ExPASy Swiss-Prot
Match: Q09MH1 (ATP synthase subunit beta, chloroplastic OS=Citrus sinensis OX=2711 GN=atpB PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-10
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 1   VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGD 44
           VRAVAMSAT+ LTRGMEVIDT  P SV VGG+TL RIFNVLG+
Sbjct: 74  VRAVAMSATDGLTRGMEVIDTGAPLSVPVGGVTLGRIFNVLGE 116

[Close]

BLAST of MS021252 vs. ExPASy Swiss-Prot
Match: Q9MRM0 (ATP synthase subunit beta, chloroplastic OS=Canella winterana OX=3426 GN=atpB PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.2e-10
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 1   VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGDSL 46
           VRAVAMSAT+ LTRGMEVIDT  P SV VGG TL RIFNVLG+ +
Sbjct: 74  VRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPI 118

[Close]

BLAST of MS021252 vs. ExPASy TrEMBL
Match: A0A7S8WSA8 (ATP synthase CF1 beta subunit OS=Securigera varia OX=53861 GN=atpB PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-08
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 1   VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGDSL 46
           +RAVAMSAT+ LTRGMEVIDTR P SV VGG+TL RIFNVLG+ +
Sbjct: 74  IRAVAMSATDGLTRGMEVIDTRAPLSVPVGGVTLGRIFNVLGEPI 118

[Close]

BLAST of MS021252 vs. ExPASy TrEMBL
Match: A0A218KG42 (ATP synthase subunit beta, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=atpB PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.9e-08
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1   VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGDSL 46
           VRAVAMSAT+ LTRGMEV+DTR P SV VGG TL RIFNVLG+ +
Sbjct: 74  VRAVAMSATDGLTRGMEVVDTRAPLSVPVGGATLGRIFNVLGEPI 118

[Close]

BLAST of MS021252 vs. ExPASy TrEMBL
Match: A0A1X9Q1E6 (ATP synthase subunit beta, chloroplastic OS=Cucumis sativus OX=3659 GN=atpB PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.9e-08
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 1   VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGDSL 46
           VRAVAMSAT+ LTRGMEV+DTR P SV VGG TL RIFNVLG+ +
Sbjct: 74  VRAVAMSATDGLTRGMEVVDTRAPLSVPVGGATLGRIFNVLGEPI 118

[Close]

BLAST of MS021252 vs. ExPASy TrEMBL
Match: A0A0C5GJL7 (ATP synthase subunit beta (Fragment) OS=Milla magnifica OX=112600 GN=atpB PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.9e-08
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 1   VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGD 44
           VRAVAMSAT+ LTRGMEVIDTR P SV VGG TL RIFNVLG+
Sbjct: 66  VRAVAMSATDGLTRGMEVIDTRAPLSVPVGGATLGRIFNVLGE 108

[Close]

BLAST of MS021252 vs. ExPASy TrEMBL
Match: A0A517LRP6 (ATP synthase subunit beta, chloroplastic OS=Corchorus capsularis OX=210143 GN=atpB PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.9e-08
Identity = 35/43 (81.40%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 1   VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGD 44
           VRAVAMSAT+ LTRGMEVIDTR P SV VGG TL RIFNVLG+
Sbjct: 74  VRAVAMSATDGLTRGMEVIDTRAPLSVPVGGATLGRIFNVLGE 116

[Close]

BLAST of MS021252 vs. TAIR 10
Match: ATCG00480.1 (ATP synthase subunit beta )

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-09
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 1   VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGD 44
           VRAVAMSAT  L RGM+V+D  +P SV VGG TL RIFNVLG+
Sbjct: 74  VRAVAMSATEGLKRGMDVVDMGNPLSVPVGGATLGRIFNVLGE 116

[Close]

BLAST of MS021252 vs. TAIR 10
Match: AT5G08670.1 (ATP synthase alpha/beta family protein )

HSP 1 Score: 43.5 bits (101), Expect = 5.2e-05
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 0


Query: 1   VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGDSL 46
           VR +AM  T  L RG +V++T  P +V VG  TL RI NVLG+ +
Sbjct: 133 VRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPI 177

[Close]

BLAST of MS021252 vs. TAIR 10
Match: AT5G08680.1 (ATP synthase alpha/beta family protein )

HSP 1 Score: 43.5 bits (101), Expect = 5.2e-05
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 0


Query: 1   VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGDSL 46
           VR +AM  T  L RG +V++T  P +V VG  TL RI NVLG+ +
Sbjct: 136 VRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPI 180

[Close]

BLAST of MS021252 vs. TAIR 10
Match: AT5G08690.1 (ATP synthase alpha/beta family protein )

HSP 1 Score: 43.5 bits (101), Expect = 5.2e-05
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 0


Query: 1   VRAVAMSATNSLTRGMEVIDTRDPTSVLVGGMTLDRIFNVLGDSL 46
           VR +AM  T  L RG +V++T  P +V VG  TL RI NVLG+ +
Sbjct: 133 VRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPI 177

The following BLAST results are available for this feature:

BLAST of MS021252 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_010043943.1	4.7e-08	75.56	ATP synthase CF1 beta subunit [Securigera varia] >QPF22173.1 ATP synthase CF1 be...	[more]
ABU75178.1	8.0e-08	81.40	AtpB, partial [Picrolemma sprucei]	[more]
YP_009751997.1	8.0e-08	75.56	CF1 subunit beta [Cionosicys macranthus] >QIT05238.1 CF1 subunit beta [Cionosicy...	[more]
Q85V50.1	8.0e-08	81.40	RecName: Full=ATP synthase subunit beta, chloroplastic; AltName: Full=ATP syntha...	[more]
AAD37036.1	8.0e-08	81.40	ATP synthase beta subunit, partial [Buxus sempervirens]	[more]

BLAST of MS021252 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A6MM43	1.1e-10	81.40	ATP synthase subunit beta, chloroplastic OS=Buxus microphylla OX=153571 GN=atpB ...	[more]
Q4VZI5	1.1e-10	75.56	ATP synthase subunit beta, chloroplastic OS=Cucumis sativus OX=3659 GN=atpB PE=3...	[more]
Q85V50	1.1e-10	81.40	ATP synthase subunit beta, chloroplastic OS=Pseudogaltonia clavata OX=81790 GN=a...	[more]
Q09MH1	4.0e-10	79.07	ATP synthase subunit beta, chloroplastic OS=Citrus sinensis OX=2711 GN=atpB PE=3...	[more]
Q9MRM0	5.2e-10	75.56	ATP synthase subunit beta, chloroplastic OS=Canella winterana OX=3426 GN=atpB PE...	[more]

BLAST of MS021252 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7S8WSA8	2.3e-08	75.56	ATP synthase CF1 beta subunit OS=Securigera varia OX=53861 GN=atpB PE=4 SV=1	[more]
A0A218KG42	3.9e-08	75.56	ATP synthase subunit beta, chloroplastic OS=Cucumis sativus var. hardwickii OX=3...	[more]
A0A1X9Q1E6	3.9e-08	75.56	ATP synthase subunit beta, chloroplastic OS=Cucumis sativus OX=3659 GN=atpB PE=3...	[more]
A0A0C5GJL7	3.9e-08	81.40	ATP synthase subunit beta (Fragment) OS=Milla magnifica OX=112600 GN=atpB PE=3 S...	[more]
A0A517LRP6	3.9e-08	81.40	ATP synthase subunit beta, chloroplastic OS=Corchorus capsularis OX=210143 GN=at...	[more]

BLAST of MS021252 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00480.1	2.0e-09	69.77	ATP synthase subunit beta	[more]
AT5G08670.1	5.2e-05	48.89	ATP synthase alpha/beta family protein	[more]
AT5G08680.1	5.2e-05	48.89	ATP synthase alpha/beta family protein	[more]
AT5G08690.1	5.2e-05	48.89	ATP synthase alpha/beta family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.12240		coord: 1..45 e-value: 6.0E-7 score: 30.4
None	No IPR available	PANTHER	PTHR15184	ATP SYNTHASE	coord: 1..43
None	No IPR available	PANTHER	PTHR15184:SF65	F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT	coord: 1..43
IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	SUPERFAMILY	50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021252.1	MS021252.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:1902600	proton transmembrane transport