MS021226 (gene) Bitter gourd (TR) v1

Overview
NameMS021226
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L13
Locationscaffold358: 165763 .. 168527 (+)
RNA-Seq ExpressionMS021226
SyntenyMS021226
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGCTCTGTGCTTCCTCCTCTACAGCCACCTTCTCTTTACATTCCACTCTCAACAATGGGGCCACGAGTAACAGAGGCATTCCCAGAAAGTCACTTGTTGCTGGTTTCCCACTCCCATTTTCGAAATCTTCTTTTCTTCAAACCCAGACCGCGATTACTCTGAACTCCAAGCCGGAGAGTTCGGTCCTTCAAGTGCGGGCTCAGCAGCTCGATCGCGTCCCTTTAGAGCAGCGGTGGATGTTCGAAGGCGACGAACTCGACGGCCCTGTACGTCTGTAAATCTTTCAAAATGTTTGTACCTTTGGGATTATCTGGTAAAGGAAATGTCTTAAATCGCGTTCTTGCATAAGGCGCTAATGGGTTCCAAGCAAACCCACAAATCCTATCGAATTTTGTTATTCTGGAACTTCTCTGTGCCCTCAATCAATCTTGTTCTTTTGGGAGGGGGAGTTGGGATTTTGTTTTTAGCATCTCCACATTGCAATGTACCCTTCCATTGATATTCTGGAGTCGTTTTGTAGAAAATATCAACAAATGGTTGAACATACAAACCTCTTTTTGCTCGTCAGACCAATTTGATGTCCGTTATCTGAATTTTGAATCTTTTTCCTGCCTTTCGAGTTTGTTTCTCTGTAACAAGCCTAGGTTTGAAGTATAGGCTTGCAAAATTGAGTTTGTGTAATATGTGTTTGGATTGCATTAAAGAAAGAATAGGTTATAGAAACTTAAGAAACTTAAGTTTGAGCTTATAAAACGTGGGTTTATGTAGCCGGTTGGACTAACAAATCTATAGCTTCAAATAAATGAACTCACATATTAAACATAAACTCGACATTTTAATACCAAGTTACATAAGCCTACTCACGAGCCAAGTACCCCTTTCAATTTGGATATTTAGCAACCTTGATTCTTTTCCGTGCAGGACATATGGAATACAACATGGTACCCGAAGGCTGCTGATCATGTTAACACAGAAAAAACCTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCAACTATTGCCATTCATATCCGAGGGAAGAATCTACCGACCTACACTCCTAGTGTGGATATGGGGGCTTTTGTGATTGTGGTATGTGGTTGCACTTATACATAATGTTCATTATGGGCAATGCATATGCTTTTGTACACTCACAAATTTCATGATATTTGTTTTCAATATAGTTACTTATTCACTGTTTCCCATAAATCAATACTTATTCTCTTGATCCTATCTAGGTAAATGCAGAAAAAGTCGCTGTGTCTGGTAGAAAGAGGACGGAAAAGCTGTACAGGAGGCATTCGGGGCGACCAGGTGGTATGAAAGTAGAAACTTTTGAGCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGTGGTATGCTTCCCAAAGGGAGGGTAAGTAATTCCTACTACTTAAGTGCCATATGCATGAAAACTGAATTTTTGTGGGTGTAGAGCGATTGCTAAAGTCTTGAGCATCCCTCTGTGTAGGAAAATGATGTCGATAGATTATGCGGATAGTATATTTTCTGCTTTAGTTTGTTGATAAGTCTTTTTAGAAGTTTTAGTTGGTTAACTGAGATAGCTTTTACTGTTCCAAGGGCCTCACATCCTATAAACAATGGATTTTAGCGGATACTGTCCTATAAGAAAACCAAGATAGCTCTGTTCTGGTTGCTGTAGACTGTCAGTAATTATGTTCCATCTATCAGAAGTGTTCTTCTCACTTGTTATCTGTGAAGTTTATGGCTTCTGGTTTCGATATAAGTAGTTAGTTCCAAGGGCCCTTAAATCCTACAAACATTAGATTTTAGAAGCAACAGTTTATGAAAAGAATCTCCAATGATAAAAAAAATACGATTTCTAGTGGCCTTTCAAAATAAGTTGATGTCTACAAGAGGATATCAAAACGTGCGTTGTAGGTAATGGTGTGTAGAATGTGATGAGACCGAGTTACTTGTGGAAAGTTCGGATTGTTTGGGAAACTAACATATGGTCTTTTGCTTACTCCGTGGCTTCTAGAATTCTTTTGCTTACATTTAATAGGCAAAATCTTTGATCCTCTACGGTCATACTGTCACTACCGGAATCCAAGACCTGTACTGTTGATGGAGCCTGGTAACTGCATGTAGGGTGATTTTCTTGGCAGTATCCAGGACCAGGAAAACTAATAATTTTGCTTTAGCTATGTTTTGAAATATTTTGGTTGTCTTTTGAATACTACCATTGATTTGAAAATTGAATCAGACTTTTCATCTGGGTGGCATTTGCACTTGCCGTTTATGATTTTTTTTTTTCACTGGGGGAAGTATAAACACTTCTGTGTCATCCTTTGAAGAATATGTTCGCGATGAACTGGCAGTTGTTTATGTGGTATATTCCGATGTCGATGCTTTGACACGACATGGATGAGATTTTACTTTAGACATCTATTGGGTTGATATGAGGTCTATGTCTTACTAGGACACCTTGCTTGAAATAGTGTAAACTGTCTCCTCACTTCTTATTTACTGTAAACTGCATCATATTGTGGTGTTTAGGAATTTCCCTGTTTCCTGCTTGCATTTATGTTCCTGAAATTTTCTTAGTTGTTAACCATGGCGGTTTATGTGCAGCTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGAGGCACAAAAGCCAGTTGAGCTGCCAATAAGGGACAAAAGGATAAACAAGGAAAGA

mRNA sequence

ATGGCGATGCTCTGTGCTTCCTCCTCTACAGCCACCTTCTCTTTACATTCCACTCTCAACAATGGGGCCACGAGTAACAGAGGCATTCCCAGAAAGTCACTTGTTGCTGGTTTCCCACTCCCATTTTCGAAATCTTCTTTTCTTCAAACCCAGACCGCGATTACTCTGAACTCCAAGCCGGAGAGTTCGGTCCTTCAAGTGCGGGCTCAGCAGCTCGATCGCGTCCCTTTAGAGCAGCGGTGGATGTTCGAAGGCGACGAACTCGACGGCCCTGACATATGGAATACAACATGGTACCCGAAGGCTGCTGATCATGTTAACACAGAAAAAACCTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCAACTATTGCCATTCATATCCGAGGGAAGAATCTACCGACCTACACTCCTAGTGTGGATATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTCGCTGTGTCTGGTAGAAAGAGGACGGAAAAGCTGTACAGGAGGCATTCGGGGCGACCAGGTGGTATGAAAGTAGAAACTTTTGAGCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGTGGTATGCTTCCCAAAGGGAGGCTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGAGGCACAAAAGCCAGTTGAGCTGCCAATAAGGGACAAAAGGATAAACAAGGAAAGA

Coding sequence (CDS)

ATGGCGATGCTCTGTGCTTCCTCCTCTACAGCCACCTTCTCTTTACATTCCACTCTCAACAATGGGGCCACGAGTAACAGAGGCATTCCCAGAAAGTCACTTGTTGCTGGTTTCCCACTCCCATTTTCGAAATCTTCTTTTCTTCAAACCCAGACCGCGATTACTCTGAACTCCAAGCCGGAGAGTTCGGTCCTTCAAGTGCGGGCTCAGCAGCTCGATCGCGTCCCTTTAGAGCAGCGGTGGATGTTCGAAGGCGACGAACTCGACGGCCCTGACATATGGAATACAACATGGTACCCGAAGGCTGCTGATCATGTTAACACAGAAAAAACCTGGTATGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCAACTATTGCCATTCATATCCGAGGGAAGAATCTACCGACCTACACTCCTAGTGTGGATATGGGGGCTTTTGTGATTGTGGTAAATGCAGAAAAAGTCGCTGTGTCTGGTAGAAAGAGGACGGAAAAGCTGTACAGGAGGCATTCGGGGCGACCAGGTGGTATGAAAGTAGAAACTTTTGAGCAGCTACAGCAGAGAATTCCTGAAAGAATTATTGAGCATGCTGTTCGTGGTATGCTTCCCAAAGGGAGGCTTGGAAGAGCACTTTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGAGGCACAAAAGCCAGTTGAGCTGCCAATAAGGGACAAAAGGATAAACAAGGAAAGA

Protein sequence

MAMLCASSSTATFSLHSTLNNGATSNRGIPRKSLVAGFPLPFSKSSFLQTQTAITLNSKPESSVLQVRAQQLDRVPLEQRWMFEGDELDGPDIWNTTWYPKAADHVNTEKTWYVVDATDKILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLYRRHSGRPGGMKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIRDKRINKER
Homology
[Close]
BLAST of MS021226 vs. NCBI nr
Match: XP_022134203.1 (50S ribosomal protein L13, chloroplastic [Momordica charantia])

HSP 1 Score: 491.1 bits (1263), Expect = 5.6e-135
Identity = 244/248 (98.39%), Postives = 247/248 (99.60%), Query Frame = 0 

Query: 1   MAMLCASSSTATFSLHSTLNNGATSNRGIPRKSLVAGFPLPFSKSSFLQTQTAITLNSKP 60
           MAMLCASSSTATF LHST+NNGATSNRGIPRKSLVAGFPLPFSKSSFLQTQTAITLNSKP
Sbjct: 1   MAMLCASSSTATFYLHSTINNGATSNRGIPRKSLVAGFPLPFSKSSFLQTQTAITLNSKP 60

Query: 61  ESSVLQVRAQQLDRVPLEQRWMFEGDELDGPDIWNTTWYPKAADHVNTEKTWYVVDATDK 120
           ESSVLQ+RAQ+LDRVPLEQRWMFEGDELDGPDIWNTTWYPKAADHVNTEKTWYVVDATDK
Sbjct: 61  ESSVLQLRAQELDRVPLEQRWMFEGDELDGPDIWNTTWYPKAADHVNTEKTWYVVDATDK 120

Query: 121 ILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLYRRHSGRPGG 180
           ILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLYRRHSGRPGG 180

Query: 181 MKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of MS021226 vs. NCBI nr
Match: XP_022941245.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 458.0 bits (1177), Expect = 5.2e-125
Identity = 228/248 (91.94%), Postives = 235/248 (94.76%), Query Frame = 0 

Query: 1   MAMLCASSSTATFSLHSTLNNGATSNRGIPRKSLVAGFPLPFSKSSFLQTQTAITLNSKP 60
           MAMLCASSSTATFSLHSTLNN   SNR IPR SLVAGFPLP SKSSFLQTQT ITL SKP
Sbjct: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  ESSVLQVRAQQLDRVPLEQRWMFEGDELDGPDIWNTTWYPKAADHVNTEKTWYVVDATDK 120
           +SSV QVRAQ+LDRVPLEQRWMFEGDE+DGPDIWN TWYPKAADHVNTEK WYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLYRRHSGRPGG 180
           ILGRLASTIA HIRGK+LPTYTPSVDMGAFVIVVNAEKVAVSGRKRT+KLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           M VETF+QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of MS021226 vs. NCBI nr
Match: XP_023524699.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 457.6 bits (1176), Expect = 6.8e-125
Identity = 228/248 (91.94%), Postives = 236/248 (95.16%), Query Frame = 0 

Query: 1   MAMLCASSSTATFSLHSTLNNGATSNRGIPRKSLVAGFPLPFSKSSFLQTQTAITLNSKP 60
           MAMLCASSSTATFSLHSTLNNG  SNR +PR SLVAGFPL  SKSSFLQTQT ITL SKP
Sbjct: 1   MAMLCASSSTATFSLHSTLNNGNASNRALPRMSLVAGFPLVQSKSSFLQTQTTITLTSKP 60

Query: 61  ESSVLQVRAQQLDRVPLEQRWMFEGDELDGPDIWNTTWYPKAADHVNTEKTWYVVDATDK 120
           +SSVLQVRAQ+LDRVPLEQRWMFEGDE+DGPDIWN TWYPKAADHVNTEK WYVVDATDK
Sbjct: 61  KSSVLQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLYRRHSGRPGG 180
           ILGRLASTIA HIRGK+LPTYTPSVDMGAFVIVVNAEKVAVSGRKRT+KLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           M VETF+QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of MS021226 vs. NCBI nr
Match: KAG6607943.1 (50S ribosomal protein L13, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 456.4 bits (1173), Expect = 1.5e-124
Identity = 227/248 (91.53%), Postives = 235/248 (94.76%), Query Frame = 0 

Query: 1   MAMLCASSSTATFSLHSTLNNGATSNRGIPRKSLVAGFPLPFSKSSFLQTQTAITLNSKP 60
           MAMLCASSSTATFSLHSTLNN   SNR IPR SLVAGFPLP SKSSFLQTQT ITL SKP
Sbjct: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  ESSVLQVRAQQLDRVPLEQRWMFEGDELDGPDIWNTTWYPKAADHVNTEKTWYVVDATDK 120
           +SSV QVRAQ+LDRVPLEQRWMF+GDE+DGPDIWN TWYPKAADHVNTEK WYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFKGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLYRRHSGRPGG 180
           ILGRLASTIA HIRGK+LPTYTPSVDMGAFVIVVNAEKVAVSGRKRT+KLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           M VETF+QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of MS021226 vs. NCBI nr
Match: XP_022981281.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 456.4 bits (1173), Expect = 1.5e-124
Identity = 227/248 (91.53%), Postives = 234/248 (94.35%), Query Frame = 0 

Query: 1   MAMLCASSSTATFSLHSTLNNGATSNRGIPRKSLVAGFPLPFSKSSFLQTQTAITLNSKP 60
           MAMLCASSSTATFSLHST NN   SNR IPRKSLVAGFPLP SKSSFLQTQT ITL SKP
Sbjct: 1   MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  ESSVLQVRAQQLDRVPLEQRWMFEGDELDGPDIWNTTWYPKAADHVNTEKTWYVVDATDK 120
           +SSV QVRAQ+LDRVPLEQRWMFEGDE+DGPDIWN TWYPKA DHVNTEK WYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLYRRHSGRPGG 180
           ILGRLASTIA HIRGK+LPTYTPSVDMGAFVIVVNAEKVAVSGRKRT+KLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           M VETF+QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of MS021226 vs. ExPASy Swiss-Prot
Match: Q9SYL9 (50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL13 PE=2 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.2e-87
Identity = 172/254 (67.72%), Postives = 197/254 (77.56%), Query Frame = 0 

Query: 1   MAMLCASSSTATFSLHSTLNNGATSNRGIPRKSLVAGFPL-PFSKSSFLQTQTAITLNSK 60
           MA+LC+SS+         L++ +  + G  RKS   GF L   SK S    +  I  NSK
Sbjct: 1   MAVLCSSSTV-------ILSSSSVKSSGSERKSPFLGFSLTAISKPS---VRVGIYANSK 60

Query: 61  PESSVLQVRAQ-----QLDRVPLEQRWMFEGDELDGPDIWNTTWYPKAADHVNTEKTWYV 120
                LQV+ +         VP  QRWMF+ +E +GPDIWNTTWYPKA+DHVNT+K W+V
Sbjct: 61  ---RGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFV 120

Query: 121 VDATDKILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLYRRH 180
           VDATDKILGRLASTIA HIRGKNL +YTPSVDMGAFVIVVNAEKVAVSG+KR +KLYRRH
Sbjct: 121 VDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRH 180

Query: 181 SGRPGGMKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP 240
           SGRPGGM VETF+QLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP
Sbjct: 181 SGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP 240

Query: 241 VELPIRDKRINKER 249
           ++LPIRDKRI  ++
Sbjct: 241 LDLPIRDKRIQLQK 241

[Close]
BLAST of MS021226 vs. ExPASy Swiss-Prot
Match: P12629 (50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL13 PE=1 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 2.8e-81
Identity = 158/250 (63.20%), Postives = 185/250 (74.00%), Query Frame = 0 

Query: 3   MLCASS----STATFSLHSTLNNGATSNRGIPRKSLVAGFPLPFSKSSFLQTQTAITLNS 62
           M CASS    S  T       N   T     PR ++ A   +   KS+   T+       
Sbjct: 4   MACASSLTFPSAQTQKSFFGTNVKQTPVLSFPRPTVAAAVAVSARKSTSASTKCTEEWRQ 63

Query: 63  KPESSVLQVRAQQLDRVPLEQRWMFEGDELDGPDIWNTTWYPKAADHVNTEKTWYVVDAT 122
             E+   +     +  VPL+QRWMF  +E  GPDIWNTTWYPK+ADHV T+K WYVVDAT
Sbjct: 64  LKEAVKKEF---AIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDAT 123

Query: 123 DKILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLYRRHSGRP 182
           D ILGR+ASTIAIHIRGKNL +YTPSVDMGAFVIVVNA+KVAVSG+KRT+KLYRRHSGRP
Sbjct: 124 DLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRP 183

Query: 183 GGMKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELP 242
           GG+K ETF+QLQ+RIPERIIEHAVRGMLPKGRLGR LFNHLKVYKG +HPH+AQ+P++LP
Sbjct: 184 GGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDLP 243

Query: 243 IRDKRINKER 249
           +RDKRI  E+
Sbjct: 244 LRDKRIRVEK 250

[Close]
BLAST of MS021226 vs. ExPASy Swiss-Prot
Match: Q3MF94 (50S ribosomal protein L13 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplM PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.6e-50
Identity = 97/131 (74.05%), Postives = 110/131 (83.97%), Query Frame = 0 

Query: 109 EKTWYVVDATDKILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTE 168
           E+ WYVVDATDK LGRLAS IA+ +RGKN   YTP +D G FVIVVNAEKVAV+G+KRT+
Sbjct: 13  ERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVVNAEKVAVTGKKRTQ 72

Query: 169 KLYRRHSGRPGGMKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHP 228
           KLYRRHSGRPGGMK ETF +LQQR+PERI+EHAV+GMLPK  LG+ LF  LKVY GP HP
Sbjct: 73  KLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQLFTKLKVYAGPTHP 132

Query: 229 HEAQKPVELPI 240
           H+AQKP EL I
Sbjct: 133 HDAQKPKELNI 143

[Close]
BLAST of MS021226 vs. ExPASy Swiss-Prot
Match: Q8YPK6 (50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rplM PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 7.5e-50
Identity = 96/131 (73.28%), Postives = 110/131 (83.97%), Query Frame = 0 

Query: 109 EKTWYVVDATDKILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTE 168
           E+ WYVVDATDK LGRLAS IA+ +RGKN   YTP +D G FVIVVNA+KVAV+G+KRT+
Sbjct: 13  ERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVVNAKKVAVTGKKRTQ 72

Query: 169 KLYRRHSGRPGGMKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHP 228
           KLYRRHSGRPGGMK ETF +LQQR+PERI+EHAV+GMLPK  LG+ LF  LKVY GP HP
Sbjct: 73  KLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQLFTKLKVYAGPTHP 132

Query: 229 HEAQKPVELPI 240
           H+AQKP EL I
Sbjct: 133 HDAQKPKELNI 143

[Close]
BLAST of MS021226 vs. ExPASy Swiss-Prot
Match: B1WQT8 (50S ribosomal protein L13 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rplM PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 9.8e-50
Identity = 93/131 (70.99%), Postives = 111/131 (84.73%), Query Frame = 0 

Query: 109 EKTWYVVDATDKILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTE 168
           ++ WYV+DATD+ LGRLA  +A  +RGKN PTYTP +D G FVI++NA+KVAV+GRK T+
Sbjct: 13  DQKWYVIDATDQRLGRLACEVAKILRGKNKPTYTPHMDTGDFVIIINADKVAVTGRKSTQ 72

Query: 169 KLYRRHSGRPGGMKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHP 228
           KLYRRHSGRPGGMK+ETFE+LQQRIPERIIE AV+GMLPK  LGR LF  LKVY GP+HP
Sbjct: 73  KLYRRHSGRPGGMKIETFEKLQQRIPERIIEKAVKGMLPKNALGRQLFTKLKVYPGPNHP 132

Query: 229 HEAQKPVELPI 240
           H+AQKP EL +
Sbjct: 133 HQAQKPEELTL 143

[Close]
BLAST of MS021226 vs. ExPASy TrEMBL
Match: A0A6J1C1B3 (50S ribosomal protein L13, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006518 PE=3 SV=1)

HSP 1 Score: 491.1 bits (1263), Expect = 2.7e-135
Identity = 244/248 (98.39%), Postives = 247/248 (99.60%), Query Frame = 0 

Query: 1   MAMLCASSSTATFSLHSTLNNGATSNRGIPRKSLVAGFPLPFSKSSFLQTQTAITLNSKP 60
           MAMLCASSSTATF LHST+NNGATSNRGIPRKSLVAGFPLPFSKSSFLQTQTAITLNSKP
Sbjct: 1   MAMLCASSSTATFYLHSTINNGATSNRGIPRKSLVAGFPLPFSKSSFLQTQTAITLNSKP 60

Query: 61  ESSVLQVRAQQLDRVPLEQRWMFEGDELDGPDIWNTTWYPKAADHVNTEKTWYVVDATDK 120
           ESSVLQ+RAQ+LDRVPLEQRWMFEGDELDGPDIWNTTWYPKAADHVNTEKTWYVVDATDK
Sbjct: 61  ESSVLQLRAQELDRVPLEQRWMFEGDELDGPDIWNTTWYPKAADHVNTEKTWYVVDATDK 120

Query: 121 ILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLYRRHSGRPGG 180
           ILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLYRRHSGRPGG 180

Query: 181 MKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           MKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of MS021226 vs. ExPASy TrEMBL
Match: A0A6J1FT16 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446606 PE=3 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 2.5e-125
Identity = 228/248 (91.94%), Postives = 235/248 (94.76%), Query Frame = 0 

Query: 1   MAMLCASSSTATFSLHSTLNNGATSNRGIPRKSLVAGFPLPFSKSSFLQTQTAITLNSKP 60
           MAMLCASSSTATFSLHSTLNN   SNR IPR SLVAGFPLP SKSSFLQTQT ITL SKP
Sbjct: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  ESSVLQVRAQQLDRVPLEQRWMFEGDELDGPDIWNTTWYPKAADHVNTEKTWYVVDATDK 120
           +SSV QVRAQ+LDRVPLEQRWMFEGDE+DGPDIWN TWYPKAADHVNTEK WYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLYRRHSGRPGG 180
           ILGRLASTIA HIRGK+LPTYTPSVDMGAFVIVVNAEKVAVSGRKRT+KLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           M VETF+QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of MS021226 vs. ExPASy TrEMBL
Match: A0A6J1IW42 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480461 PE=3 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 7.4e-125
Identity = 227/248 (91.53%), Postives = 234/248 (94.35%), Query Frame = 0 

Query: 1   MAMLCASSSTATFSLHSTLNNGATSNRGIPRKSLVAGFPLPFSKSSFLQTQTAITLNSKP 60
           MAMLCASSSTATFSLHST NN   SNR IPRKSLVAGFPLP SKSSFLQTQT ITL SKP
Sbjct: 1   MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  ESSVLQVRAQQLDRVPLEQRWMFEGDELDGPDIWNTTWYPKAADHVNTEKTWYVVDATDK 120
           +SSV QVRAQ+LDRVPLEQRWMFEGDE+DGPDIWN TWYPKA DHVNTEK WYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLYRRHSGRPGG 180
           ILGRLASTIA HIRGK+LPTYTPSVDMGAFVIVVNAEKVAVSGRKRT+KLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           M VETF+QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of MS021226 vs. ExPASy TrEMBL
Match: A0A6J1F6Z3 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442721 PE=3 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 1.7e-121
Identity = 222/248 (89.52%), Postives = 231/248 (93.15%), Query Frame = 0 

Query: 1   MAMLCASSSTATFSLHSTLNNGATSNRGIPRKSLVAGFPLPFSKSSFLQTQTAITLNSKP 60
           MAMLCASSST TF +HSTLNNG+ SNRGIPRKS V GFPLP SKS  L TQT ITLNS+ 
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60

Query: 61  ESSVLQVRAQQLDRVPLEQRWMFEGDELDGPDIWNTTWYPKAADHVNTEKTWYVVDATDK 120
           +SS +QVRAQ+LDRVPLEQRWMFEGDELDGPDIWN TWYPKA DHVNTEK WYVVDATDK
Sbjct: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLYRRHSGRPGG 180
           ILGRLASTIA HIRGK+LPTYTPSVDMGAFVIVVNAEKVAVSGRKRT+KLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           M VETF+QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of MS021226 vs. ExPASy TrEMBL
Match: A0A0A0KZG1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G623380 PE=3 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 4.2e-120
Identity = 217/248 (87.50%), Postives = 229/248 (92.34%), Query Frame = 0 

Query: 1   MAMLCASSSTATFSLHSTLNNGATSNRGIPRKSLVAGFPLPFSKSSFLQTQTAITLNSKP 60
           MAMLCASSST TFSLHSTL NG TSN+  PR SL+  FPLP SKSSFL TQT+I+L S  
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 61  ESSVLQVRAQQLDRVPLEQRWMFEGDELDGPDIWNTTWYPKAADHVNTEKTWYVVDATDK 120
           + S LQVRAQ+LDRVPLEQRWMFEGDELDGPDIWN TWYPKAADHVNTEK WYVVDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLYRRHSGRPGG 180
           ILGRLASTIA HIRGK+LPTYTPSVDMGAFVIVVNAEK+AVSG+KRT+KLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240
           M VETF+QLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]
BLAST of MS021226 vs. TAIR 10
Match: AT1G78630.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 324.3 bits (830), Expect = 8.4e-89
Identity = 172/254 (67.72%), Postives = 197/254 (77.56%), Query Frame = 0 

Query: 1   MAMLCASSSTATFSLHSTLNNGATSNRGIPRKSLVAGFPL-PFSKSSFLQTQTAITLNSK 60
           MA+LC+SS+         L++ +  + G  RKS   GF L   SK S    +  I  NSK
Sbjct: 1   MAVLCSSSTV-------ILSSSSVKSSGSERKSPFLGFSLTAISKPS---VRVGIYANSK 60

Query: 61  PESSVLQVRAQ-----QLDRVPLEQRWMFEGDELDGPDIWNTTWYPKAADHVNTEKTWYV 120
                LQV+ +         VP  QRWMF+ +E +GPDIWNTTWYPKA+DHVNT+K W+V
Sbjct: 61  ---RGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFV 120

Query: 121 VDATDKILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLYRRH 180
           VDATDKILGRLASTIA HIRGKNL +YTPSVDMGAFVIVVNAEKVAVSG+KR +KLYRRH
Sbjct: 121 VDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRH 180

Query: 181 SGRPGGMKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP 240
           SGRPGGM VETF+QLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP
Sbjct: 181 SGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP 240

Query: 241 VELPIRDKRINKER 249
           ++LPIRDKRI  ++
Sbjct: 241 LDLPIRDKRIQLQK 241

[Close]
BLAST of MS021226 vs. TAIR 10
Match: AT3G01790.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-18
Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 0 

Query: 112 WYVVDATDKILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLY 171
           W V DA  ++LGRLAS I+  ++ K+ PTY P+ D G   IV+NA+++  +GRK T+K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 231
           R H+G  G +K  + +    + P  +I  AV  MLP   L       L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 151

Query: 232 QKPVE 237
            KP+E
Sbjct: 152 DKPLE 155

[Close]
BLAST of MS021226 vs. TAIR 10
Match: AT3G01790.2 (Ribosomal protein L13 family protein )

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-18
Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 0 

Query: 112 WYVVDATDKILGRLASTIAIHIRGKNLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTEKLY 171
           W V DA  ++LGRLAS I+  ++ K+ PTY P+ D G   IV+NA+++  +GRK T+K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMKVETFEQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 231
           R H+G  G +K  + +    + P  +I  AV  MLP   L       L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 151

Query: 232 QKPVE 237
            KP+E
Sbjct: 152 DKPLE 155

The following BLAST results are available for this feature:
BLAST of MS021226 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022134203.15.6e-13598.3950S ribosomal protein L13, chloroplastic [Momordica charantia][more]
XP_022941245.15.2e-12591.9450S ribosomal protein L13, chloroplastic-like [Cucurbita moschata][more]
XP_023524699.16.8e-12591.9450S ribosomal protein L13, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
KAG6607943.11.5e-12491.5350S ribosomal protein L13, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_022981281.11.5e-12491.5350S ribosomal protein L13, chloroplastic-like [Cucurbita maxima][more]
BLAST of MS021226 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SYL91.2e-8767.7250S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1... [more]
P126292.8e-8163.2050S ribosomal protein L13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL13 P... [more]
Q3MF942.6e-5074.0550S ribosomal protein L13 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937... [more]
Q8YPK67.5e-5073.2850S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576... [more]
B1WQT89.8e-5070.9950S ribosomal protein L13 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) ... [more]
BLAST of MS021226 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C1B32.7e-13598.3950S ribosomal protein L13, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1FT162.5e-12591.9450S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1IW427.4e-12591.5350S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1F6Z31.7e-12189.5250S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A0A0KZG14.2e-12087.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G623380 PE=3 SV=1[more]
BLAST of MS021226 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G78630.18.4e-8967.72Ribosomal protein L13 family protein [more]
AT3G01790.11.2e-1838.40Ribosomal protein L13 family protein [more]
AT3G01790.21.2e-1838.40Ribosomal protein L13 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005823Ribosomal protein L13, bacterial-typeTIGRFAMTIGR01066TIGR01066coord: 106..237
e-value: 2.5E-57
score: 190.6
IPR005822Ribosomal protein L13PFAMPF00572Ribosomal_L13coord: 110..228
e-value: 5.1E-45
score: 152.4
IPR005822Ribosomal protein L13PANTHERPTHR11545RIBOSOMAL PROTEIN L13coord: 61..248
IPR005822Ribosomal protein L13HAMAPMF_01366Ribosomal_L13coord: 112..238
score: 27.495642
IPR005822Ribosomal protein L13CDDcd00392Ribosomal_L13coord: 112..225
e-value: 2.59E-65
score: 196.572
IPR036899Ribosomal protein L13 superfamilyGENE3D3.90.1180.10Ribosomal protein L13coord: 101..244
e-value: 3.4E-61
score: 207.2
IPR036899Ribosomal protein L13 superfamilySUPERFAMILY52161Ribosomal protein L13coord: 106..240
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..248
NoneNo IPR availablePANTHERPTHR11545:SF2450S RIBOSOMAL PROTEIN L13, CHLOROPLASTIC-LIKEcoord: 61..248
IPR023563Ribosomal protein L13, conserved sitePROSITEPS00783RIBOSOMAL_L13coord: 202..224

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021226.1MS021226.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome