MS021115 (gene) Bitter gourd (TR) v1

Overview
NameMS021115
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold290: 1399433 .. 1399543 (+)
RNA-Seq ExpressionMS021115
SyntenyMS021115
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGTGCATTTCTTCAGCAAATTTCTCAATCCTCCTAAATGACAAGTCGCGTGGTAAAATCGATGCTAATAGGGCGATTCGTCAAGGTGATCCTTTGTCACCTTTTTTTATT

mRNA sequence

GGGTGCATTTCTTCAGCAAATTTCTCAATCCTCCTAAATGACAAGTCGCGTGGTAAAATCGATGCTAATAGGGCGATTCGTCAAGGTGATCCTTTGTCACCTTTTTTTATT

Coding sequence (CDS)

GGGTGCATTTCTTCAGCAAATTTCTCAATCCTCCTAAATGACAAGTCGCGTGGTAAAATCGATGCTAATAGGGCGATTCGTCAAGGTGATCCTTTGTCACCTTTTTTTATT

Protein sequence

GCISSANFSILLNDKSRGKIDANRAIRQGDPLSPFFI
Homology
BLAST of MS021115 vs. NCBI nr
Match: PRQ44942.1 (putative RNA-directed DNA polymerase [Rosa chinensis])

HSP 1 Score: 59.7 bits (143), Expect = 6.2e-06
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 1   GCISSANFSILLNDKSRGKIDANRAIRQGDPLSPF 36
           GC+ SANFSIL+N + RGK DA+R +RQGDPLSPF
Sbjct: 120 GCLRSANFSILINGRPRGKFDASRGLRQGDPLSPF 154

BLAST of MS021115 vs. NCBI nr
Match: XP_022158566.1 (uncharacterized protein LOC111025019 [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-05
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 1  GCISSANFSILLNDKSRGKIDANRAIRQGDPLSPF 36
          GC+SSANFS+ +N + RGKI A R +RQGDPLSPF
Sbjct: 26 GCVSSANFSVFINGRPRGKIFATRGLRQGDPLSPF 60

BLAST of MS021115 vs. NCBI nr
Match: BBN68784.1 (TatD related DNase [Prunus dulcis])

HSP 1 Score: 57.4 bits (137), Expect = 3.1e-05
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 1  GCISSANFSILLNDKSRGKIDANRAIRQGDPLSPF 36
          GC+ SANFSI++N K RGK  A+R +RQGDPLSPF
Sbjct: 16 GCLESANFSIMINGKPRGKFRASRGLRQGDPLSPF 50

BLAST of MS021115 vs. NCBI nr
Match: VVA20479.1 (Hypothetical predicted protein, partial [Prunus dulcis])

HSP 1 Score: 57.4 bits (137), Expect = 3.1e-05
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 1   GCISSANFSILLNDKSRGKIDANRAIRQGDPLSPF 36
           GC+ SANFSI++N K RGK  A+R +RQGDPLSPF
Sbjct: 589 GCLESANFSIMINGKPRGKFRASRGLRQGDPLSPF 623

BLAST of MS021115 vs. NCBI nr
Match: BBH07150.1 (TatD related DNase [Prunus dulcis])

HSP 1 Score: 57.4 bits (137), Expect = 3.1e-05
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 1   GCISSANFSILLNDKSRGKIDANRAIRQGDPLSPF 36
           GC+ SANFSI++N K RGK  A+R +RQGDPLSPF
Sbjct: 518 GCLESANFSIMINGKPRGKFRASRGLRQGDPLSPF 552

BLAST of MS021115 vs. ExPASy TrEMBL
Match: A0A2P6REU1 (Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0484711 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.0e-06
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 1   GCISSANFSILLNDKSRGKIDANRAIRQGDPLSPF 36
           GC+ SANFSIL+N + RGK DA+R +RQGDPLSPF
Sbjct: 120 GCLRSANFSILINGRPRGKFDASRGLRQGDPLSPF 154

BLAST of MS021115 vs. ExPASy TrEMBL
Match: A0A6J1E196 (uncharacterized protein LOC111025019 OS=Momordica charantia OX=3673 GN=LOC111025019 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-05
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 1  GCISSANFSILLNDKSRGKIDANRAIRQGDPLSPF 36
          GC+SSANFS+ +N + RGKI A R +RQGDPLSPF
Sbjct: 26 GCVSSANFSVFINGRPRGKIFATRGLRQGDPLSPF 60

BLAST of MS021115 vs. ExPASy TrEMBL
Match: A0A5H2XP17 (TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_575S000200 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 1  GCISSANFSILLNDKSRGKIDANRAIRQGDPLSPF 36
          GC+ SANFSI++N K RGK  A+R +RQGDPLSPF
Sbjct: 16 GCLESANFSIMINGKPRGKFRASRGLRQGDPLSPF 50

BLAST of MS021115 vs. ExPASy TrEMBL
Match: A0A4Y1RS61 (TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_019005 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 1   GCISSANFSILLNDKSRGKIDANRAIRQGDPLSPF 36
           GC+ SANFSI++N K RGK  A+R +RQGDPLSPF
Sbjct: 518 GCLESANFSIMINGKPRGKFRASRGLRQGDPLSPF 552

BLAST of MS021115 vs. ExPASy TrEMBL
Match: A0A5H2XQW2 (TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_862S001100 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 1   GCISSANFSILLNDKSRGKIDANRAIRQGDPLSPF 36
           GC+ SANFSI++N K RGK  A+R +RQGDPLSPF
Sbjct: 368 GCLESANFSIMINGKPRGKFRASRGLRQGDPLSPF 402

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PRQ44942.16.2e-0671.43putative RNA-directed DNA polymerase [Rosa chinensis][more]
XP_022158566.12.3e-0568.57uncharacterized protein LOC111025019 [Momordica charantia][more]
BBN68784.13.1e-0568.57TatD related DNase [Prunus dulcis][more]
VVA20479.13.1e-0568.57Hypothetical predicted protein, partial [Prunus dulcis][more]
BBH07150.13.1e-0568.57TatD related DNase [Prunus dulcis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P6REU13.0e-0671.43Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3... [more]
A0A6J1E1961.1e-0568.57uncharacterized protein LOC111025019 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5H2XP171.5e-0568.57TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_575S000200 PE=4 SV=1[more]
A0A4Y1RS611.5e-0568.57TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_019005 PE=4 SV=1[more]
A0A5H2XQW21.5e-0568.57TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_862S001100 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021115.1MS021115.1mRNA