MS021077 (gene) Bitter gourd (TR) v1

Overview
NameMS021077
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold290: 1062696 .. 1063980 (+)
RNA-Seq ExpressionMS021077
SyntenyMS021077
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGGGAGAGAAGTACTGCCTCCGAACCCGGAGAGCGTTGGCGTAACTGCAACCTCTGCTGCTGCTTCTCATGGAATTGAGGTAGCAGTAGAGTTCAAGCCTGTTGAACACCCAGTCGAGCCTCTGGAAAACGACAGGCCAATTCAGTGCCCATTGCCTGAACCATCGATTCTGAATGTGAGCTGCAGACTTGATCTTCTTGTACAATTTTGTTCATTTTAATGCCTATCCGATCCTTATATCTAGTTCCGTTATACCATATGTATATATCCAAGGCGAAGCAAGTGGCTCAACACTTTATCTTCATGAGTGTTAGACAAGTTGCGGTCGCAAAAATTGAATATTCTAGATTAATTTTGTAAGGTCAACTCGTGATTTTAAAGGCGAAATTTAGAACCATACAAAAAACCAATATAAGCTTCATAGAGTAAAGGCGTTCCTTCATTGGAAAAGGACCAAAATCATAGGTTTAAATTTCTAGCTTATGCCTATGGGGTTTCCTGGCATGGGAATTTCTAGGAACCCCAACCGGGCAATGTTGCCGATTTGGTAAAGTTAGTTCAAACATGTGAGATCAAACAAAGAACTATGGATTCAGAAGGACTTGGGTTAATTTGTTCTTCATTCAACTTGAATGATATTAATTTCTCTTATCTATGAGGGTGAAGTATGTAAAAGTTTGGCTGAGGATTCTTTCTGAAAAAATACAAGTGCTTTTAAGGTCATTGTTAGCTTCTATTTATTAGTGATACCTTATTTTGAGATTTCTTTTCCTCTTCCTGAACATTTAGTATGCAGGTGTCGATACGTCTACCTGCAAGTTTTTTTCTTTTTCTCTTTCCACCCCGGGCACTATTGTCAAAGTTTGTTAAAAAATTTACTTGCACAATATGTATTGTCTCGGCCCTCTCGGGTTTTGTGGATTAAGTATAACATTTATGATGGTGAAGTTTTGAAACTATGAAGCTGGTCTCGATTGGATTAACTGTTAGGGAATTATGATGTTGTTGATTTCCATATTCATTTGCCAAACTTATTGGTGAAGGTTGTAGATTTGAGATATATTTTGAGATCTAAATCTGATTTTGAACTCCTCAATCACTAGGATGGCACAATATGGAAGCAGCGATCTGCGAGTATGCGTAAACTGCCAGATTTGCCTGTGATGAAGGAAGCTGAAGTTGGTGAGACAAGACCACAGGCGACACGGCCAAATCGCTTGATCTTACCATCGATCAGTGCTCCCGAACATAACATCCTAAACCTACTCGAGGAATCTGGGATA

mRNA sequence

GATGGGAGAGAAGTACTGCCTCCGAACCCGGAGAGCGTTGGCGTAACTGCAACCTCTGCTGCTGCTTCTCATGGAATTGAGGTAGCAGTAGAGTTCAAGCCTGTTGAACACCCAGTCGAGCCTCTGGAAAACGACAGGCCAATTCAGTGCCCATTGCCTGAACCATCGATTCTGAATGATGGCACAATATGGAAGCAGCGATCTGCGAGTATGCGTAAACTGCCAGATTTGCCTGTGATGAAGGAAGCTGAAGTTGGTGAGACAAGACCACAGGCGACACGGCCAAATCGCTTGATCTTACCATCGATCAGTGCTCCCGAACATAACATCCTAAACCTACTCGAGGAATCTGGGATA

Coding sequence (CDS)

GATGGGAGAGAAGTACTGCCTCCGAACCCGGAGAGCGTTGGCGTAACTGCAACCTCTGCTGCTGCTTCTCATGGAATTGAGGTAGCAGTAGAGTTCAAGCCTGTTGAACACCCAGTCGAGCCTCTGGAAAACGACAGGCCAATTCAGTGCCCATTGCCTGAACCATCGATTCTGAATGATGGCACAATATGGAAGCAGCGATCTGCGAGTATGCGTAAACTGCCAGATTTGCCTGTGATGAAGGAAGCTGAAGTTGGTGAGACAAGACCACAGGCGACACGGCCAAATCGCTTGATCTTACCATCGATCAGTGCTCCCGAACATAACATCCTAAACCTACTCGAGGAATCTGGGATA

Protein sequence

DGREVLPPNPESVGVTATSAAASHGIEVAVEFKPVEHPVEPLENDRPIQCPLPEPSILNDGTIWKQRSASMRKLPDLPVMKEAEVGETRPQATRPNRLILPSISAPEHNILNLLEESGI
Homology
BLAST of MS021077 vs. NCBI nr
Match: XP_022145314.1 (uncharacterized protein LOC111014798 [Momordica charantia])

HSP 1 Score: 234.6 bits (597), Expect = 4.5e-58
Identity = 117/119 (98.32%), Postives = 117/119 (98.32%), Query Frame = 0

Query: 1   DGREVLPPNPESVGVTATSAAASHGIEVAVEFKPVEHPVEPLENDRPIQCPLPEPSILND 60
           DGREVLPPNPESVGVTATSAAASHGIEVAVEFKPVEHPVEPLENDRPIQCPLPEPSILND
Sbjct: 23  DGREVLPPNPESVGVTATSAAASHGIEVAVEFKPVEHPVEPLENDRPIQCPLPEPSILND 82

Query: 61  GTIWKQRSASMRKLPDLPVMKEAEVGETRPQATRPNRLILPSISAPEHNILNLLEESGI 120
           GTIWKQRSASMRKL DLPVMKEAEVGETRPQATRPNRLILPSISAPE NILNLLEESGI
Sbjct: 83  GTIWKQRSASMRKLADLPVMKEAEVGETRPQATRPNRLILPSISAPERNILNLLEESGI 141

BLAST of MS021077 vs. NCBI nr
Match: XP_008448622.1 (PREDICTED: uncharacterized protein LOC103490741 isoform X2 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 1.2e-50
Identity = 104/119 (87.39%), Postives = 110/119 (92.44%), Query Frame = 0

Query: 1   DGREVLPPNPESVGVTATSAAASHGIEVAVEFKPVEHPVEPLENDRPIQCPLPEPSILND 60
           DGRE LPPNPES GV+ATSAAASHGIEVAVEFKPVEHP+EPL+ND+PIQCPLPEPSILND
Sbjct: 23  DGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILND 82

Query: 61  GTIWKQRSASMRKLPDLPVMKEAEVGETRPQATRPNRLILPSISAPEHNILNLLEESGI 120
           G IWK+R +SMRKLPDLPVMKEAEVGETRP   RP R ILPSISAPEHNILNLLEESGI
Sbjct: 83  GRIWKERVSSMRKLPDLPVMKEAEVGETRP---RPTRTILPSISAPEHNILNLLEESGI 138

BLAST of MS021077 vs. NCBI nr
Match: XP_008448621.1 (PREDICTED: uncharacterized protein LOC103490741 isoform X1 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 1.2e-50
Identity = 104/119 (87.39%), Postives = 110/119 (92.44%), Query Frame = 0

Query: 1   DGREVLPPNPESVGVTATSAAASHGIEVAVEFKPVEHPVEPLENDRPIQCPLPEPSILND 60
           DGRE LPPNPES GV+ATSAAASHGIEVAVEFKPVEHP+EPL+ND+PIQCPLPEPSILND
Sbjct: 29  DGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILND 88

Query: 61  GTIWKQRSASMRKLPDLPVMKEAEVGETRPQATRPNRLILPSISAPEHNILNLLEESGI 120
           G IWK+R +SMRKLPDLPVMKEAEVGETRP   RP R ILPSISAPEHNILNLLEESGI
Sbjct: 89  GRIWKERVSSMRKLPDLPVMKEAEVGETRP---RPTRTILPSISAPEHNILNLLEESGI 144

BLAST of MS021077 vs. NCBI nr
Match: KAA0053008.1 (uncharacterized protein E6C27_scaffold344G001200 [Cucumis melo var. makuwa] >TYK11464.1 uncharacterized protein E5676_scaffold139G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 209.9 bits (533), Expect = 1.2e-50
Identity = 104/119 (87.39%), Postives = 110/119 (92.44%), Query Frame = 0

Query: 1   DGREVLPPNPESVGVTATSAAASHGIEVAVEFKPVEHPVEPLENDRPIQCPLPEPSILND 60
           DGRE LPPNPES GV+ATSAAASHGIEVAVEFKPVEHP+EPL+ND+PIQCPLPEPSILND
Sbjct: 24  DGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILND 83

Query: 61  GTIWKQRSASMRKLPDLPVMKEAEVGETRPQATRPNRLILPSISAPEHNILNLLEESGI 120
           G IWK+R +SMRKLPDLPVMKEAEVGETRP   RP R ILPSISAPEHNILNLLEESGI
Sbjct: 84  GRIWKERVSSMRKLPDLPVMKEAEVGETRP---RPTRTILPSISAPEHNILNLLEESGI 139

BLAST of MS021077 vs. NCBI nr
Match: XP_038891759.1 (uncharacterized protein LOC120081150 isoform X1 [Benincasa hispida])

HSP 1 Score: 209.5 bits (532), Expect = 1.6e-50
Identity = 104/119 (87.39%), Postives = 111/119 (93.28%), Query Frame = 0

Query: 1   DGREVLPPNPESVGVTATSAAASHGIEVAVEFKPVEHPVEPLENDRPIQCPLPEPSILND 60
           DGRE LPPNPES GV+ATSAAASHGIEVAVEFKPVEHP+EPL+NDRPIQCPLPEPSILND
Sbjct: 23  DGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHPIEPLDNDRPIQCPLPEPSILND 82

Query: 61  GTIWKQRSASMRKLPDLPVMKEAEVGETRPQATRPNRLILPSISAPEHNILNLLEESGI 120
           G IWK+R +S+RKLPDLPVMKEAEVGETRP+AT   R ILPSISAPEHNILNLLEESGI
Sbjct: 83  GRIWKERVSSIRKLPDLPVMKEAEVGETRPRAT---RTILPSISAPEHNILNLLEESGI 138

BLAST of MS021077 vs. ExPASy TrEMBL
Match: A0A6J1CUV8 (uncharacterized protein LOC111014798 OS=Momordica charantia OX=3673 GN=LOC111014798 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.2e-58
Identity = 117/119 (98.32%), Postives = 117/119 (98.32%), Query Frame = 0

Query: 1   DGREVLPPNPESVGVTATSAAASHGIEVAVEFKPVEHPVEPLENDRPIQCPLPEPSILND 60
           DGREVLPPNPESVGVTATSAAASHGIEVAVEFKPVEHPVEPLENDRPIQCPLPEPSILND
Sbjct: 23  DGREVLPPNPESVGVTATSAAASHGIEVAVEFKPVEHPVEPLENDRPIQCPLPEPSILND 82

Query: 61  GTIWKQRSASMRKLPDLPVMKEAEVGETRPQATRPNRLILPSISAPEHNILNLLEESGI 120
           GTIWKQRSASMRKL DLPVMKEAEVGETRPQATRPNRLILPSISAPE NILNLLEESGI
Sbjct: 83  GTIWKQRSASMRKLADLPVMKEAEVGETRPQATRPNRLILPSISAPERNILNLLEESGI 141

BLAST of MS021077 vs. ExPASy TrEMBL
Match: A0A5D3CJW0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001210 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.8e-51
Identity = 104/119 (87.39%), Postives = 110/119 (92.44%), Query Frame = 0

Query: 1   DGREVLPPNPESVGVTATSAAASHGIEVAVEFKPVEHPVEPLENDRPIQCPLPEPSILND 60
           DGRE LPPNPES GV+ATSAAASHGIEVAVEFKPVEHP+EPL+ND+PIQCPLPEPSILND
Sbjct: 24  DGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILND 83

Query: 61  GTIWKQRSASMRKLPDLPVMKEAEVGETRPQATRPNRLILPSISAPEHNILNLLEESGI 120
           G IWK+R +SMRKLPDLPVMKEAEVGETRP   RP R ILPSISAPEHNILNLLEESGI
Sbjct: 84  GRIWKERVSSMRKLPDLPVMKEAEVGETRP---RPTRTILPSISAPEHNILNLLEESGI 139

BLAST of MS021077 vs. ExPASy TrEMBL
Match: A0A1S3BKR4 (uncharacterized protein LOC103490741 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490741 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.8e-51
Identity = 104/119 (87.39%), Postives = 110/119 (92.44%), Query Frame = 0

Query: 1   DGREVLPPNPESVGVTATSAAASHGIEVAVEFKPVEHPVEPLENDRPIQCPLPEPSILND 60
           DGRE LPPNPES GV+ATSAAASHGIEVAVEFKPVEHP+EPL+ND+PIQCPLPEPSILND
Sbjct: 29  DGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILND 88

Query: 61  GTIWKQRSASMRKLPDLPVMKEAEVGETRPQATRPNRLILPSISAPEHNILNLLEESGI 120
           G IWK+R +SMRKLPDLPVMKEAEVGETRP   RP R ILPSISAPEHNILNLLEESGI
Sbjct: 89  GRIWKERVSSMRKLPDLPVMKEAEVGETRP---RPTRTILPSISAPEHNILNLLEESGI 144

BLAST of MS021077 vs. ExPASy TrEMBL
Match: A0A1S3BL03 (uncharacterized protein LOC103490741 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490741 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.8e-51
Identity = 104/119 (87.39%), Postives = 110/119 (92.44%), Query Frame = 0

Query: 1   DGREVLPPNPESVGVTATSAAASHGIEVAVEFKPVEHPVEPLENDRPIQCPLPEPSILND 60
           DGRE LPPNPES GV+ATSAAASHGIEVAVEFKPVEHP+EPL+ND+PIQCPLPEPSILND
Sbjct: 23  DGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILND 82

Query: 61  GTIWKQRSASMRKLPDLPVMKEAEVGETRPQATRPNRLILPSISAPEHNILNLLEESGI 120
           G IWK+R +SMRKLPDLPVMKEAEVGETRP   RP R ILPSISAPEHNILNLLEESGI
Sbjct: 83  GRIWKERVSSMRKLPDLPVMKEAEVGETRP---RPTRTILPSISAPEHNILNLLEESGI 138

BLAST of MS021077 vs. ExPASy TrEMBL
Match: A0A0A0L159 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006710 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.7e-50
Identity = 103/119 (86.55%), Postives = 109/119 (91.60%), Query Frame = 0

Query: 1   DGREVLPPNPESVGVTATSAAASHGIEVAVEFKPVEHPVEPLENDRPIQCPLPEPSILND 60
           DGRE LPPNPES GV+ATSA ASHGIEVAVEFKPVEHP+EPL+ND+PIQCPLPEPSILND
Sbjct: 23  DGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILND 82

Query: 61  GTIWKQRSASMRKLPDLPVMKEAEVGETRPQATRPNRLILPSISAPEHNILNLLEESGI 120
           G IWK+R +SMRKLPDLPVMKEAEVGETRP   RP R ILPSISAPEHNILNLLEESGI
Sbjct: 83  GRIWKERVSSMRKLPDLPVMKEAEVGETRP---RPTRTILPSISAPEHNILNLLEESGI 138

BLAST of MS021077 vs. TAIR 10
Match: AT1G31940.1 (unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35585.1); Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 151.0 bits (380), Expect = 6.1e-37
Identity = 78/124 (62.90%), Postives = 94/124 (75.81%), Query Frame = 0

Query: 1   DGREVLPPNPESVGVTATSA-AASHGIEVAVEFKPVEHPVEPLENDRPIQCPLPEPSILN 60
           D +EVL PN + +  T T+A  A+HGIEVA EFKPVEHPVEPL+ND PIQCPLPEPSILN
Sbjct: 23  DDKEVLAPNSDVIAATTTTATTATHGIEVATEFKPVEHPVEPLDNDLPIQCPLPEPSILN 82

Query: 61  DGTIWKQR-SASMRKLPDLPVMKEAEVGET------RPQATRPNRLILPSISAPEHNILN 117
           DG IWK+R SASMR+  DL ++K+    E+       P+  +PNR ILPS+SAPEHN+LN
Sbjct: 83  DGRIWKERVSASMRRKGDLQIVKDEAASESDGSAPKPPRPPQPNRSILPSLSAPEHNLLN 142

BLAST of MS021077 vs. TAIR 10
Match: AT2G35585.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31940.1); Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-32
Identity = 71/127 (55.91%), Postives = 91/127 (71.65%), Query Frame = 0

Query: 1   DGREVLPPNPESVGVTATSAAASHGIEVAVEFKPVEHPVEPLENDRPIQCPLPEPSILND 60
           DGREVL P  +    T T+   +HGIEVA EFKPV+HP+EPL+ND+PIQCPLPEPSILND
Sbjct: 23  DGREVLSPRSDLAPATNTTTTETHGIEVATEFKPVDHPMEPLDNDQPIQCPLPEPSILND 82

Query: 61  GTIWKQR--SASMRKLPDLPVM-----KEAEVGET----RPQATRPNRLILPSISAPEHN 117
           G +WK+R  ++SMR+  DL ++     +E++V  T    R      NR ILPS+SAPEH+
Sbjct: 83  GRLWKERVSASSMRRRSDLAIVQDGMDEESDVSVTSIPSRTSQCNTNRPILPSLSAPEHD 142

BLAST of MS021077 vs. TAIR 10
Match: AT2G01913.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 6.2e-05
Identity = 23/48 (47.92%), Postives = 28/48 (58.33%), Query Frame = 0

Query: 11 ESVGVTATSAAASHGIEVAVEFKPVEHPVEPLENDRPIQCPLPEPSIL 59
          ESV  T          +  VEF PVEHP+EP E DRP++CP+P  S L
Sbjct: 10 ESVEETVMMEYDEETNQFDVEFCPVEHPIEPEEEDRPVKCPVPISSSL 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022145314.14.5e-5898.32uncharacterized protein LOC111014798 [Momordica charantia][more]
XP_008448622.11.2e-5087.39PREDICTED: uncharacterized protein LOC103490741 isoform X2 [Cucumis melo][more]
XP_008448621.11.2e-5087.39PREDICTED: uncharacterized protein LOC103490741 isoform X1 [Cucumis melo][more]
KAA0053008.11.2e-5087.39uncharacterized protein E6C27_scaffold344G001200 [Cucumis melo var. makuwa] >TYK... [more]
XP_038891759.11.6e-5087.39uncharacterized protein LOC120081150 isoform X1 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CUV82.2e-5898.32uncharacterized protein LOC111014798 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A5D3CJW05.8e-5187.39Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BKR45.8e-5187.39uncharacterized protein LOC103490741 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3BL035.8e-5187.39uncharacterized protein LOC103490741 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A0A0L1591.7e-5086.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006710 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G31940.16.1e-3762.90unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures;... [more]
AT2G35585.11.2e-3255.91unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G01913.16.2e-0547.92unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..59
NoneNo IPR availablePANTHERPTHR34196OS02G0697700 PROTEINcoord: 1..119
NoneNo IPR availablePANTHERPTHR34196:SF3SUBFAMILY NOT NAMEDcoord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021077.1MS021077.1mRNA