MS021043 (gene) Bitter gourd (TR) v1

Overview


Name	MS021043
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Mediator of RNA polymerase II transcription subunit 10
Location	scaffold290: 744185 .. 745007 (-)
RNA-Seq Expression	MS021043
Synteny	MS021043

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCGGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGTGGTGGCAATGGATCAGTCATTAACGATACATCAGCATCGGCAACAGTGGATGACTCGAAGCAAAACTTGAACCAAGTAATCAACTCCATACAGAAGACTTTGGGCCTCCTCCATCAGCTTAACCTCACCGTTTCTAACTTCAATGCGGCTTATCAGCTGCCTCTTTTACAACGCCTGTATGCTGATTTTGCTTCATCTAATATCTAATTCTTTATTATCTCCGTATTCCACTGAGTCCACTCTTTACCAGTGATATTCTTCTTGATTTTACAGTAATTCTCTCGTTATGGAGCTAGATAACATGGTTAAATTATCAGAGAAATGCAACATACAGGTTCCTATGGAGGTTCTTAAGTGAGTCTTCGCACCACCTTTTTTGATCTCTAACTTTGCGAACTTTTTCTATTTTGTACACTACATGGTTCTCTTGGTCCAATTCTTACTTTTCTTTTAATTAGTTTGATCGATGATGGGAAGAATCCGGATGAATTCACGAGGGACGTAATAAATAGTTGCATTGCAAAAAATCAGAGTACAAAAGGCAAAACTGATGCGTTCAAGGTAGTCTTTATGTCCCTATGTGACAGGCTGTTAAAATCTACTTCACTCATATTTGTATCTTGATTTTCAAAAATTCACAAAAATATTTACTGAACCTTGTACCACATACTATCTTCAGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTTCCTGATGAAGTCGAGTCATACAGAGAAATTCGTGCTGCTTCTGCTGCTGTGAGT

mRNA sequence

ATGGATTCGGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGTGGTGGCAATGGATCAGTCATTAACGATACATCAGCATCGGCAACAGTGGATGACTCGAAGCAAAACTTGAACCAAGTAATCAACTCCATACAGAAGACTTTGGGCCTCCTCCATCAGCTTAACCTCACCGTTTCTAACTTCAATGCGGCTTATCAGCTGCCTCTTTTACAACGCCTTAATTCTCTCGTTATGGAGCTAGATAACATGGTTAAATTATCAGAGAAATGCAACATACAGGTTCCTATGGAGGTTCTTAATTTGATCGATGATGGGAAGAATCCGGATGAATTCACGAGGGACGTAATAAATAGTTGCATTGCAAAAAATCAGAGTACAAAAGGCAAAACTGATGCGTTCAAGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTTCCTGATGAAGTCGAGTCATACAGAGAAATTCGTGCTGCTTCTGCTGCTGTGAGT

Coding sequence (CDS)

ATGGATTCGGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGTGGTGGCAATGGATCAGTCATTAACGATACATCAGCATCGGCAACAGTGGATGACTCGAAGCAAAACTTGAACCAAGTAATCAACTCCATACAGAAGACTTTGGGCCTCCTCCATCAGCTTAACCTCACCGTTTCTAACTTCAATGCGGCTTATCAGCTGCCTCTTTTACAACGCCTTAATTCTCTCGTTATGGAGCTAGATAACATGGTTAAATTATCAGAGAAATGCAACATACAGGTTCCTATGGAGGTTCTTAATTTGATCGATGATGGGAAGAATCCGGATGAATTCACGAGGGACGTAATAAATAGTTGCATTGCAAAAAATCAGAGTACAAAAGGCAAAACTGATGCGTTCAAGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTTCCTGATGAAGTCGAGTCATACAGAGAAATTCGTGCTGCTTCTGCTGCTGTGAGT

Protein sequence

MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTVSNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVS

Homology

[Close]

BLAST of MS021043 vs. NCBI nr
Match: XP_022145303.1 (mediator of RNA polymerase II transcription subunit 10b-like [Momordica charantia] >XP_022145304.1 mediator of RNA polymerase II transcription subunit 10b-like [Momordica charantia] >XP_022145305.1 mediator of RNA polymerase II transcription subunit 10b-like [Momordica charantia] >XP_022145306.1 mediator of RNA polymerase II transcription subunit 10b-like [Momordica charantia])

HSP 1 Score: 309.3 bits (791), Expect = 2.0e-80
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

[Close]

BLAST of MS021043 vs. NCBI nr
Match: KAA0052968.1 (mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo var. makuwa] >TYK11424.1 mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 303.5 bits (776), Expect = 1.1e-78
Identity = 162/168 (96.43%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTS S TVDDSKQNLNQVINSIQKTLG+LHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLV+ELDNMVKLSEKC IQVPMEVLNLIDDGKNPDEFTRDV+NS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVS 169
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVS
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVS 168

[Close]

BLAST of MS021043 vs. NCBI nr
Match: KAG7015809.1 (Mediator of RNA polymerase II transcription subunit 10b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.1 bits (775), Expect = 1.5e-78
Identity = 161/167 (96.41%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTSAS TVDDSKQNLNQVINSIQKTLG+LHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLV+ELDNMVKLSEKC IQVPMEV+NLIDDGKNPDEFTRDV+NS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAV 168
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAV
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAV 167

[Close]

BLAST of MS021043 vs. NCBI nr
Match: XP_022923485.1 (mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923486.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923487.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923488.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923489.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923491.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923492.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022965379.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965380.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965381.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965383.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965384.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965385.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965386.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_023553208.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo] >XP_023553209.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo] >XP_023553210.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo] >XP_023553211.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo] >XP_023553212.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 302.4 bits (773), Expect = 2.5e-78
Identity = 161/168 (95.83%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTSAS TVDDSKQNLNQVINSIQKTLG+LHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLV+ELDNMVKLSEKC IQVPMEV+NLIDDGKNPDEFTRDV+NS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVS 169
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA S
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAES 168

[Close]

BLAST of MS021043 vs. NCBI nr
Match: KAG6577769.1 (Mediator of RNA polymerase II transcription subunit 10b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 302.4 bits (773), Expect = 2.5e-78
Identity = 161/168 (95.83%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTSAS TVDDSKQNLNQVINSIQKTLG+LHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLV+ELDNMVKLSEKC IQVPMEV+NLIDDGKNPDEFTRDV+NS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVS 169
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA S
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAES 168

[Close]

BLAST of MS021043 vs. ExPASy Swiss-Prot
Match: F4HPA7 (Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana OX=3702 GN=MED10B PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.0e-59
Identity = 128/172 (74.42%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSV---INDTSASATV-DDSKQNLNQVINSIQKTLGLLHQL 60
           MD  QN S  AG GGS  NG++    ND +++ TV DDSK+NL+QVINSI+KTLG+LHQL
Sbjct: 1   MDPTQNTS--AGIGGS--NGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQL 60

Query: 61  NLTVSNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRD 120
           +LTV++F  A QL LLQRLNSLVMELDNM KLSEKCNIQ+PMEVLNLIDDGKNPDEFT+D
Sbjct: 61  HLTVTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKD 120

Query: 121 VINSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVS 169
           V+NSCIA+NQ TKGKTDAFK LRKH+LEELEQ FPDEV+ YREIRA+SAAV+
Sbjct: 121 VLNSCIARNQVTKGKTDAFKDLRKHILEELEQNFPDEVDMYREIRASSAAVT 168

[Close]

BLAST of MS021043 vs. ExPASy Swiss-Prot
Match: Q9FHZ2 (Mediator of RNA polymerase II transcription subunit 10a OS=Arabidopsis thaliana OX=3702 GN=MED10A PE=1 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 4.4e-54
Identity = 121/167 (72.46%), Postives = 137/167 (82.04%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MD  QN  + AG G    NGS+  + +A ATVDDS + LNQ+INS QK L LLHQL LTV
Sbjct: 1   MDQTQN--TIAGIGEI--NGSIKTEINAIATVDDSNEKLNQIINSNQKILELLHQLKLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVIN- 120
           S+F  A QL LLQRLNSLVMELDNM KLS+KCNIQVP+EVLNLIDDGKNPDEFT+DV+N 
Sbjct: 61  SSFTPASQLHLLQRLNSLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTKDVLNK 120

Query: 121 SCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           +CIAKNQ TKGK+DAFKGLRKHLLEELEQ FPDEV+ YR+IRA+ AA
Sbjct: 121 NCIAKNQVTKGKSDAFKGLRKHLLEELEQAFPDEVDRYRDIRASYAA 163

[Close]

BLAST of MS021043 vs. ExPASy Swiss-Prot
Match: Q16G71 (Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti OX=7159 GN=MED10 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.7e-17
Identity = 43/123 (34.96%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 39  LNQVINSIQKTLGLLHQLNLTVSNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPM 98
           L  + N ++  +  + Q+ + VS+F    Q  L Q++ SLV  L  + KL  + ++ VP+
Sbjct: 5   LENLENHLEMFIENVRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQVDVNVPL 64

Query: 99  EVLNLIDDGKNPDEFTRDVINSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYR 158
           EV + ID G+NP  +T+D I+  + KN+  KGK D+++  + +L++EL++TFP E+  Y+
Sbjct: 65  EVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELDETFPTEIAKYK 124

Query: 159 EIR 162
            IR
Sbjct: 125 AIR 127

[Close]

BLAST of MS021043 vs. ExPASy Swiss-Prot
Match: Q7Q5R5 (Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae OX=7165 GN=MED10 PE=3 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-16
Identity = 43/123 (34.96%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 39  LNQVINSIQKTLGLLHQLNLTVSNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPM 98
           L  + N ++  +  + Q+ + VS+F    Q  L Q++ SLV  L  + KL  + ++ VP+
Sbjct: 5   LENLENHLEMFIENVRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQIDVNVPL 64

Query: 99  EVLNLIDDGKNPDEFTRDVINSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYR 158
           EV + ID G+NP  +T+D I+  + KN+  KGK D+++  + +L++EL +TFP E+  Y+
Sbjct: 65  EVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELSETFPVEISKYK 124

Query: 159 EIR 162
            IR
Sbjct: 125 AIR 127

[Close]

BLAST of MS021043 vs. ExPASy Swiss-Prot
Match: Q9CXU0 (Mediator of RNA polymerase II transcription subunit 10 OS=Mus musculus OX=10090 GN=Med10 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 42/117 (35.90%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 46  IQKTLGLLHQLNLTVSNFNAAYQLPLLQRLNSLVMELDNMVKLSEKC-NIQVPMEVLNLI 105
           ++K +  + QL + VS+F  + Q  L Q+LN +V  L ++ K  ++  +I VP+EV   I
Sbjct: 12  LEKFVENIRQLGIIVSDFQPSSQAGLSQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYI 71

Query: 106 DDGKNPDEFTRDVINSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIR 162
           D G+NP  +T++ +   +AKN+  KGK D  K  +  L++EL + FP+++  YR IR
Sbjct: 72  DQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIR 128

[Close]

BLAST of MS021043 vs. ExPASy TrEMBL
Match: A0A6J1CVZ0 (Mediator of RNA polymerase II transcription subunit 10 OS=Momordica charantia OX=3673 GN=LOC111014791 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 9.8e-81
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

[Close]

BLAST of MS021043 vs. ExPASy TrEMBL
Match: A0A5D3CJS3 (Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo var. makuwa OX=1194695 GN=MED10 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.4e-79
Identity = 162/168 (96.43%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTS S TVDDSKQNLNQVINSIQKTLG+LHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLV+ELDNMVKLSEKC IQVPMEVLNLIDDGKNPDEFTRDV+NS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVS 169
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVS
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVS 168

[Close]

BLAST of MS021043 vs. ExPASy TrEMBL
Match: A0A6J1HLJ2 (Mediator of RNA polymerase II transcription subunit 10 OS=Cucurbita maxima OX=3661 GN=LOC111465259 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78
Identity = 161/168 (95.83%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTSAS TVDDSKQNLNQVINSIQKTLG+LHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLV+ELDNMVKLSEKC IQVPMEV+NLIDDGKNPDEFTRDV+NS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVS 169
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA S
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAES 168

[Close]

BLAST of MS021043 vs. ExPASy TrEMBL
Match: A0A6J1E6X8 (Mediator of RNA polymerase II transcription subunit 10 OS=Cucurbita moschata OX=3662 GN=LOC111431167 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78
Identity = 161/168 (95.83%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTSAS TVDDSKQNLNQVINSIQKTLG+LHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLV+ELDNMVKLSEKC IQVPMEV+NLIDDGKNPDEFTRDV+NS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVS 169
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA S
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAES 168

[Close]

BLAST of MS021043 vs. ExPASy TrEMBL
Match: A0A1S4DXE0 (Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo OX=3656 GN=LOC103490703 PE=3 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.5e-78
Identity = 160/167 (95.81%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTS S TVDDSKQNLNQVINSIQKTLG+LHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLV+ELDNMVKLSEKC IQVPMEVLNLIDDGKNPDEFTRDV+NS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAV 168
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA+
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAM 167

[Close]

BLAST of MS021043 vs. TAIR 10
Match: AT1G26665.2 (Mediator complex, subunit Med10 )

HSP 1 Score: 228.4 bits (581), Expect = 4.2e-60
Identity = 128/172 (74.42%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSV---INDTSASATV-DDSKQNLNQVINSIQKTLGLLHQL 60
           MD  QN S  AG GGS  NG++    ND +++ TV DDSK+NL+QVINSI+KTLG+LHQL
Sbjct: 1   MDPTQNTS--AGIGGS--NGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQL 60

Query: 61  NLTVSNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRD 120
           +LTV++F  A QL LLQRLNSLVMELDNM KLSEKCNIQ+PMEVLNLIDDGKNPDEFT+D
Sbjct: 61  HLTVTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKD 120

Query: 121 VINSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAVS 169
           V+NSCIA+NQ TKGKTDAFK LRKH+LEELEQ FPDEV+ YREIRA+SAAV+
Sbjct: 121 VLNSCIARNQVTKGKTDAFKDLRKHILEELEQNFPDEVDMYREIRASSAAVT 168

[Close]

BLAST of MS021043 vs. TAIR 10
Match: AT1G26665.1 (Mediator complex, subunit Med10 )

HSP 1 Score: 226.5 bits (576), Expect = 1.6e-59
Identity = 127/170 (74.71%), Postives = 146/170 (85.88%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSV---INDTSASATV-DDSKQNLNQVINSIQKTLGLLHQL 60
           MD  QN S  AG GGS  NG++    ND +++ TV DDSK+NL+QVINSI+KTLG+LHQL
Sbjct: 1   MDPTQNTS--AGIGGS--NGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQL 60

Query: 61  NLTVSNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRD 120
           +LTV++F  A QL LLQRLNSLVMELDNM KLSEKCNIQ+PMEVLNLIDDGKNPDEFT+D
Sbjct: 61  HLTVTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKD 120

Query: 121 VINSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           V+NSCIA+NQ TKGKTDAFK LRKH+LEELEQ FPDEV+ YREIRA+SAA
Sbjct: 121 VLNSCIARNQVTKGKTDAFKDLRKHILEELEQNFPDEVDMYREIRASSAA 166

[Close]

BLAST of MS021043 vs. TAIR 10
Match: AT5G41910.1 (Mediator complex, subunit Med10 )

HSP 1 Score: 212.2 bits (539), Expect = 3.2e-55
Identity = 121/167 (72.46%), Postives = 137/167 (82.04%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MD  QN  + AG G    NGS+  + +A ATVDDS + LNQ+INS QK L LLHQL LTV
Sbjct: 1   MDQTQN--TIAGIGEI--NGSIKTEINAIATVDDSNEKLNQIINSNQKILELLHQLKLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVIN- 120
           S+F  A QL LLQRLNSLVMELDNM KLS+KCNIQVP+EVLNLIDDGKNPDEFT+DV+N 
Sbjct: 61  SSFTPASQLHLLQRLNSLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTKDVLNK 120

Query: 121 SCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           +CIAKNQ TKGK+DAFKGLRKHLLEELEQ FPDEV+ YR+IRA+ AA
Sbjct: 121 NCIAKNQVTKGKSDAFKGLRKHLLEELEQAFPDEVDRYRDIRASYAA 163

The following BLAST results are available for this feature:

BLAST of MS021043 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145303.1	2.0e-80	100.00	mediator of RNA polymerase II transcription subunit 10b-like [Momordica charanti...	[more]
KAA0052968.1	1.1e-78	96.43	mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo...	[more]
KAG7015809.1	1.5e-78	96.41	Mediator of RNA polymerase II transcription subunit 10b [Cucurbita argyrosperma ...	[more]
XP_022923485.1	2.5e-78	95.83	mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata...	[more]
KAG6577769.1	2.5e-78	95.83	Mediator of RNA polymerase II transcription subunit 10b, partial [Cucurbita argy...	[more]

BLAST of MS021043 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HPA7	6.0e-59	74.42	Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana ...	[more]
Q9FHZ2	4.4e-54	72.46	Mediator of RNA polymerase II transcription subunit 10a OS=Arabidopsis thaliana ...	[more]
Q16G71	5.7e-17	34.96	Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti OX=7159 ...	[more]
Q7Q5R5	1.3e-16	34.96	Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae OX=7...	[more]
Q9CXU0	1.2e-14	35.90	Mediator of RNA polymerase II transcription subunit 10 OS=Mus musculus OX=10090 ...	[more]

BLAST of MS021043 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVZ0	9.8e-81	100.00	Mediator of RNA polymerase II transcription subunit 10 OS=Momordica charantia OX...	[more]
A0A5D3CJS3	5.4e-79	96.43	Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo var. maku...	[more]
A0A6J1HLJ2	1.2e-78	95.83	Mediator of RNA polymerase II transcription subunit 10 OS=Cucurbita maxima OX=36...	[more]
A0A6J1E6X8	1.2e-78	95.83	Mediator of RNA polymerase II transcription subunit 10 OS=Cucurbita moschata OX=...	[more]
A0A1S4DXE0	3.5e-78	95.81	Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo OX=3656 G...	[more]

BLAST of MS021043 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26665.2	4.2e-60	74.42	Mediator complex, subunit Med10	[more]
AT1G26665.1	1.6e-59	74.71	Mediator complex, subunit Med10	[more]
AT5G41910.1	3.2e-55	72.46	Mediator complex, subunit Med10	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019145	Mediator complex, subunit Med10	PFAM	PF09748	Med10	coord: 45..158 e-value: 4.2E-30 score: 104.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR13345	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10	coord: 1..168
None	No IPR available	PANTHER	PTHR13345:SF9	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10A-RELATED	coord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021043.1	MS021043.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity