MS021033 (gene) Bitter gourd (TR) v1

Overview


Name	MS021033
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	cold shock domain-containing protein 3
Location	scaffold290: 679016 .. 679801 (-)
RNA-Seq Expression	MS021033
Synteny	MS021033

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAATGGTTCAGCGATTCGAAAGGATTTGGCTTCATCAAGCCAGATGTAGAAGGCCCGGATCTGTTCGTGCATCAATCCTCGATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGACCATGTCGAGTTTCAGATCGCCCCGGGCGATGATGGGAAATCGAAAGCCATCGAGGTTGTTTCCCTCGATGGATCTTCGGGAAACAGGAGGGATAACTTTGGTGGTGGTGGTGGTGGTGGAAGGGGTGGCCGCGGCGGCGGTTATGGGTTTGGTGGCAGTGGCTGGAGAGGCGGTGATCGGCGGAACGGGAGCAGCGGAGCTGGTGGGGCTGGGTGCTATCACTGTGGTGAACAAGGGCATTTGGCCAGAGACTGTACTCGTGCTAGTAACCGCGGCGGAGGCGGCGGTGGTGGGTGTTTCACTTGCGGTGAGGTTGGACACTTAGCGAGGGATTGCCCACGAGGAAACAGCGGTGGAGGCGGCGGTGCCGGTGCTGGGGCTTGCTATAATTGTGGCGGTTTTGGGCACTTGGCTAGGGATTGCAATCGGGGTGGAGCTGGAGGTGGGAGTGGTGGTGGCGGTGGTGGTGGTTGCTTTAATTGTGGAGAATATGGACACTTGGCTAGAGAATGCCCGAATGAAAGCCGTAACAGTGGCGGCACTGGAAGATTTGGCGGCGGCGGTGGCGGTGGCTCGAACACCTGCTTCAATTGTGGGAAATCGGGGCATTTTGCCAGGGAGTGTCCTGATGCACCT

mRNA sequence

ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAATGGTTCAGCGATTCGAAAGGATTTGGCTTCATCAAGCCAGATGTAGAAGGCCCGGATCTGTTCGTGCATCAATCCTCGATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGACCATGTCGAGTTTCAGATCGCCCCGGGCGATGATGGGAAATCGAAAGCCATCGAGGTTGTTTCCCTCGATGGATCTTCGGGAAACAGGAGGGATAACTTTGGTGGTGGTGGTGGTGGTGGAAGGGGTGGCCGCGGCGGCGGTTATGGGTTTGGTGGCAGTGGCTGGAGAGGCGGTGATCGGCGGAACGGGAGCAGCGGAGCTGGTGGGGCTGGGTGCTATCACTGTGGTGAACAAGGGCATTTGGCCAGAGACTGTACTCGTGCTAGTAACCGCGGCGGAGGCGGCGGTGGTGGGTGTTTCACTTGCGGTGAGGTTGGACACTTAGCGAGGGATTGCCCACGAGGAAACAGCGGTGGAGGCGGCGGTGCCGGTGCTGGGGCTTGCTATAATTGTGGCGGTTTTGGGCACTTGGCTAGGGATTGCAATCGGGGTGGAGCTGGAGGTGGGAGTGGTGGTGGCGGTGGTGGTGGTTGCTTTAATTGTGGAGAATATGGACACTTGGCTAGAGAATGCCCGAATGAAAGCCGTAACAGTGGCGGCACTGGAAGATTTGGCGGCGGCGGTGGCGGTGGCTCGAACACCTGCTTCAATTGTGGGAAATCGGGGCATTTTGCCAGGGAGTGTCCTGATGCACCT

Coding sequence (CDS)

ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAATGGTTCAGCGATTCGAAAGGATTTGGCTTCATCAAGCCAGATGTAGAAGGCCCGGATCTGTTCGTGCATCAATCCTCGATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGACCATGTCGAGTTTCAGATCGCCCCGGGCGATGATGGGAAATCGAAAGCCATCGAGGTTGTTTCCCTCGATGGATCTTCGGGAAACAGGAGGGATAACTTTGGTGGTGGTGGTGGTGGTGGAAGGGGTGGCCGCGGCGGCGGTTATGGGTTTGGTGGCAGTGGCTGGAGAGGCGGTGATCGGCGGAACGGGAGCAGCGGAGCTGGTGGGGCTGGGTGCTATCACTGTGGTGAACAAGGGCATTTGGCCAGAGACTGTACTCGTGCTAGTAACCGCGGCGGAGGCGGCGGTGGTGGGTGTTTCACTTGCGGTGAGGTTGGACACTTAGCGAGGGATTGCCCACGAGGAAACAGCGGTGGAGGCGGCGGTGCCGGTGCTGGGGCTTGCTATAATTGTGGCGGTTTTGGGCACTTGGCTAGGGATTGCAATCGGGGTGGAGCTGGAGGTGGGAGTGGTGGTGGCGGTGGTGGTGGTTGCTTTAATTGTGGAGAATATGGACACTTGGCTAGAGAATGCCCGAATGAAAGCCGTAACAGTGGCGGCACTGGAAGATTTGGCGGCGGCGGTGGCGGTGGCTCGAACACCTGCTTCAATTGTGGGAAATCGGGGCATTTTGCCAGGGAGTGTCCTGATGCACCT

Protein sequence

MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP

Homology

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BLAST of MS021033 vs. NCBI nr
Match: XP_022145255.1 (cold shock domain-containing protein 3 [Momordica charantia])

HSP 1 Score: 510.0 bits (1312), Expect = 1.2e-140
Identity = 260/262 (99.24%), Postives = 261/262 (99.62%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGA 120
           DGKSKAIEVVSLDGSSGNRRDNF GGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGA
Sbjct: 61  DGKSKAIEVVSLDGSSGNRRDNF-GGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGA 120

Query: 121 GCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYN 180
           GCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGE+GHLARDCPRGNSGGGGGAGAGACYN
Sbjct: 121 GCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYN 180

Query: 181 CGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGG 240
           CGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGG
Sbjct: 181 CGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGG 240

Query: 241 GSNTCFNCGKSGHFARECPDAP 263
           GSNTCFNCGKSGHFARECPDAP
Sbjct: 241 GSNTCFNCGKSGHFARECPDAP 261

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BLAST of MS021033 vs. NCBI nr
Match: KAG6596667.1 (Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 463.8 bits (1192), Expect = 1.0e-126
Identity = 246/266 (92.48%), Postives = 250/266 (93.98%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGG-GGRGGRGGGYGFGGSGWRGGDRRNGSSGAGG 120
           DGKSKAIEVV+LDGSSGNRRDNFGGGGG GGRG  GGGYGFG  GWRGGDRRNGSSGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRG--GGGYGFG--GWRGGDRRNGSSGAGG 120

Query: 121 AGCYHCGEQGHLARDCTRASNRGGGG--GGGCFTCGEVGHLARDCPRGNS-GGGGGAGAG 180
            GCY CGEQGHLARDC RASNRGGGG  GGGCFTCGEVGHLARDCPRGNS GGGGGAG G
Sbjct: 121 GGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGG 180

Query: 181 ACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGG 240
            CYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLAR+C NESRNSGG GRFGG
Sbjct: 181 GCYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARDCQNESRNSGGGGRFGG 240

Query: 241 GGGGGSNTCFNCGKSGHFARECPDAP 263
           GGGGG+NTCFNCGKSGHFARECPDAP
Sbjct: 241 GGGGGANTCFNCGKSGHFARECPDAP 262

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BLAST of MS021033 vs. NCBI nr
Match: KAG7028203.1 (Cold shock protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 459.9 bits (1182), Expect = 1.5e-125
Identity = 246/266 (92.48%), Postives = 250/266 (93.98%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGG-GGRGGRGGGYGFGGSGWRGGDRRNGSSGAGG 120
           DGKSKAIEVV+LDGSSGNRRDNFGGGGG GGRG  GGGYGFG  GWRGGDRRNGSSGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRG--GGGYGFG--GWRGGDRRNGSSGAGG 120

Query: 121 AGCYHCGEQGHLARDCTRASNRGGGG--GGGCFTCGEVGHLARDCPRGNS-GGGGGAGAG 180
            GCY CGEQGHLARDC RASNRGGGG  GGGCFTCGEVGHLARDCPRGNS GGGGGAG G
Sbjct: 121 GGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGG 180

Query: 181 ACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGG 240
            CYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLAR+C NESRNSGG GRFGG
Sbjct: 181 GCYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARDCQNESRNSGG-GRFGG 240

Query: 241 GGGGGSNTCFNCGKSGHFARECPDAP 263
           GGGGG+NTCFNCGKSGHFARECPDAP
Sbjct: 241 GGGGGANTCFNCGKSGHFARECPDAP 261

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BLAST of MS021033 vs. NCBI nr
Match: XP_023540854.1 (cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo] >XP_023540855.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 456.8 bits (1174), Expect = 1.2e-124
Identity = 245/268 (91.42%), Postives = 249/268 (92.91%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGG-GGRGGRGGGYGFGGSGWRGGDRRNGSSGAGG 120
           DGKSKAIEVV+LDGSSGNRRDNFGGGGG GGRG  GGGYGFG  GWRGGDRRNGSSGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRG--GGGYGFG--GWRGGDRRNGSSGAGG 120

Query: 121 AGCYHCGEQGHLARDCTRASNRGGGG--GGGCFTCGEVGHLARDCPRGNS-GGGGGAGAG 180
            GCY CGEQGHLARDC R SNRGGGG  GGGCFTCGEVGHLARDCPRGNS GGGGGAG G
Sbjct: 121 GGCYQCGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGG 180

Query: 181 ACYNCGGFGHLARDCNRGGAGGGS--GGGGGGGCFNCGEYGHLARECPNESRNSGGTGRF 240
            CYNCGGFGHLARDCNRGGAGGGS  GGGGGGGCFNCGEYGHLAR+C NESRNSGG GRF
Sbjct: 181 GCYNCGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCGEYGHLARDCQNESRNSGGGGRF 240

Query: 241 GGGGGGGSNTCFNCGKSGHFARECPDAP 263
           GGGGGGG+NTCFNCGKSGHFARECPDAP
Sbjct: 241 GGGGGGGANTCFNCGKSGHFARECPDAP 264

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BLAST of MS021033 vs. NCBI nr
Match: XP_022948847.1 (cold shock protein 1-like [Cucurbita moschata] >XP_022948857.1 cold shock protein 1-like [Cucurbita moschata])

HSP 1 Score: 456.4 bits (1173), Expect = 1.6e-124
Identity = 244/266 (91.73%), Postives = 248/266 (93.23%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           M EERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MGEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGG-GGRGGRGGGYGFGGSGWRGGDRRNGSSGAGG 120
           DGKSKAIEVV+LDGSSGNRRDNFGGGGG GGRG  GGGYGFG  GWRGGDRRNGSSGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRG--GGGYGFG--GWRGGDRRNGSSGAGG 120

Query: 121 AGCYHCGEQGHLARDCTRASNRGGGG--GGGCFTCGEVGHLARDCPRGNS-GGGGGAGAG 180
            GCY CGEQGHLARDC RASNRGGGG  GGGCFTCGEVGHLARDCPRGNS GGGGGAG G
Sbjct: 121 GGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGG 180

Query: 181 ACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGG 240
            CYNCGGFGHLARDCNRGGAGGGS GGGGGGCFNCGEYGHLAR+C NESRNSGG GRFGG
Sbjct: 181 GCYNCGGFGHLARDCNRGGAGGGS-GGGGGGCFNCGEYGHLARDCQNESRNSGGGGRFGG 240

Query: 241 GGGGGSNTCFNCGKSGHFARECPDAP 263
           GGGGG+NTCFNCGKSGHFARECPDAP
Sbjct: 241 GGGGGANTCFNCGKSGHFARECPDAP 261

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BLAST of MS021033 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 4.1e-54
Identity = 148/298 (49.66%), Postives = 177/298 (59.40%), Query Frame = 0


Query: 5   RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R  G V WFSD KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65  KAIEVVSLDGSSGNRRDNFGGGGGGG-------------RGGRGGGYGFGGSGWRGGDRR 124
           KAIEV +  G S N+++N   G GG                G  GG  FGG    GG RR
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGG----GGGRR 129

Query: 125 NGSSGAGGAGCYHCGEQGHLARDCTRA--SNRGGGGGGG--CFTCGEVGHLARDCPRGNS 184
           +G  G     CY CG+ GH ARDC ++   N GGGGGGG  C++CGEVGHLA+DC  G+ 
Sbjct: 130 SGGEGE----CYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSG 189

Query: 185 ----GGGGGAGAG--ACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLAREC 244
               GGGGG G+G   CY CGG GH ARDC +   GGG+ GGGG  C+ CG  GH+A+ C
Sbjct: 190 GNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQN--GGGNVGGGGSTCYTCGGVGHIAKVC 249

Query: 245 PNESRNSGGTG-----RFGG----------------GGGGGSNTCFNCGKSGHFAREC 259
            ++  + GG G       GG                GGGGGSN CF CGK GHFAREC
Sbjct: 250 TSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297

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BLAST of MS021033 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 5.5e-51
Identity = 141/290 (48.62%), Postives = 168/290 (57.93%), Query Frame = 0


Query: 5   RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R TG V WF+ SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65  KAIEVVSLDGSSGNRRDNFGGGGGGGRGGRGGGYGFG-----------GSGWRGGDRRNG 124
           KA+ V +  G S  + +N  G G    GG  G Y  G           G G  GG+RR+ 
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRS- 129

Query: 125 SSGAGGAGCYHCGEQGHLARDCTRASN---RGG--GGGGGCFTCGEVGHLARDCPRGNSG 184
               GG GCY+CG+ GH ARDCT A N   RG   GG  GC+TCG+VGH+ARDC + + G
Sbjct: 130 ---RGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVG 189

Query: 185 GGGGAGA-----GACYNCGGFGHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHLAREC 244
            G   GA       CY CG  GH ARDC +  A G   SGGGG G C++CG  GH+AR+C
Sbjct: 190 NGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC 249

Query: 245 PNESRNS------GGTGRF-------GGGGGGGSNTCFNCGKSGHFAREC 259
             + + S      GG+G         G GGGG  N C+ CGK GHFAREC
Sbjct: 250 ATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295

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BLAST of MS021033 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 8.2e-39
Identity = 126/262 (48.09%), Postives = 149/262 (56.87%), Query Frame = 0


Query: 1   MAEE---RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA 60
           MAEE   R  G V+WFSD KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++ 
Sbjct: 1   MAEESGQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVE 60

Query: 61  PGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGA 120
            G DG++KA++V   DG++       G GGGGG GGRGGG G+GG          GS G 
Sbjct: 61  SGGDGRTKAVDVTGPDGAAVQG----GRGGGGGGGGRGGG-GYGG----------GSGGY 120

Query: 121 GGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGA 180
           GG G               R  +RG GGG G +                 GGGGG G G+
Sbjct: 121 GGGG---------------RGGSRGYGGGDGGY-----------------GGGGGYGGGS 180

Query: 181 CYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRF-GG 240
            Y  GG G+       GG  GG G GGG GCF CGE GH AR+C ++S   GG GRF GG
Sbjct: 181 RYGGGGGGY-----GGGGGYGGGGSGGGSGCFKCGESGHFARDC-SQSGGGGGGGRFGGG 209

Query: 241 GGGGGSNTCFNCGKSGHFAREC 259
           GGGGG   C+ CG+ GHFAREC
Sbjct: 241 GGGGGGGGCYKCGEDGHFAREC 209

[Close]

BLAST of MS021033 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.0e-33
Identity = 108/232 (46.55%), Postives = 129/232 (55.60%), Query Frame = 0


Query: 4   ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           ER  G V+WF   KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ +
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 64  SKAIEVVSLDGS---------SGNRRDNFGGGGGGGRGGRGGGYGFGGSGWRGGDRRNGS 123
            KAI+V   DG+         S   R  FGGG GGGRG  GGGYG GG G+ G     G 
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGS-GGGYGGGGGGYGG----RGG 128

Query: 124 SGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAG 183
            G GG+ CY CGE GH+ARDC+      GGGG G                   GGGGG G
Sbjct: 129 GGRGGSDCYKCGEPGHMARDCSE-----GGGGYG-------------------GGGGGYG 188

Query: 184 AGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESR 227
            G  Y  GG G+        G GG  GGGGGG C++CGE GH AR+C +  R
Sbjct: 189 GGGGYGGGGGGY--------GGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]

BLAST of MS021033 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.3e-31
Identity = 105/221 (47.51%), Postives = 123/221 (55.66%), Query Frame = 0


Query: 4   ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           +R  G V+WF   KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 64  SKAIEVVSLDGS--SGNRRDNFGGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGAG 123
            KAIEV   DG+   GN       GGGG  GGRG   GFGG G RGG R  GS G GG G
Sbjct: 73  PKAIEVSGPDGAPVQGN------SGGGGSSGGRG---GFGGGGGRGGGRGGGSYG-GGYG 132

Query: 124 CYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNC 183
               G +G            GGGG   CF CGE GH+AR+C +G  G  GG G G     
Sbjct: 133 GRGSGGRG------------GGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGG----- 192

Query: 184 GGFGHLARDCNRGGAGGGSGGGGGG-GCFNCGEYGHLAREC 222
                      R G+GGG GGGGGG  C++CGE GH AR+C
Sbjct: 193 -----------RYGSGGGGGGGGGGLSCYSCGESGHFARDC 195

[Close]

BLAST of MS021033 vs. ExPASy TrEMBL
Match: A0A6J1CTY3 (cold shock domain-containing protein 3 OS=Momordica charantia OX=3673 GN=LOC111014753 PE=4 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 5.9e-141
Identity = 260/262 (99.24%), Postives = 261/262 (99.62%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGA 120
           DGKSKAIEVVSLDGSSGNRRDNF GGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGA
Sbjct: 61  DGKSKAIEVVSLDGSSGNRRDNF-GGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGA 120

Query: 121 GCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYN 180
           GCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGE+GHLARDCPRGNSGGGGGAGAGACYN
Sbjct: 121 GCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYN 180

Query: 181 CGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGG 240
           CGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGG
Sbjct: 181 CGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGG 240

Query: 241 GSNTCFNCGKSGHFARECPDAP 263
           GSNTCFNCGKSGHFARECPDAP
Sbjct: 241 GSNTCFNCGKSGHFARECPDAP 261

[Close]

BLAST of MS021033 vs. ExPASy TrEMBL
Match: A0A6J1GAE9 (cold shock protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111452385 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 7.8e-125
Identity = 244/266 (91.73%), Postives = 248/266 (93.23%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           M EERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MGEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGG-GGRGGRGGGYGFGGSGWRGGDRRNGSSGAGG 120
           DGKSKAIEVV+LDGSSGNRRDNFGGGGG GGRG  GGGYGFG  GWRGGDRRNGSSGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRG--GGGYGFG--GWRGGDRRNGSSGAGG 120

Query: 121 AGCYHCGEQGHLARDCTRASNRGGGG--GGGCFTCGEVGHLARDCPRGNS-GGGGGAGAG 180
            GCY CGEQGHLARDC RASNRGGGG  GGGCFTCGEVGHLARDCPRGNS GGGGGAG G
Sbjct: 121 GGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGG 180

Query: 181 ACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGG 240
            CYNCGGFGHLARDCNRGGAGGGS GGGGGGCFNCGEYGHLAR+C NESRNSGG GRFGG
Sbjct: 181 GCYNCGGFGHLARDCNRGGAGGGS-GGGGGGCFNCGEYGHLARDCQNESRNSGGGGRFGG 240

Query: 241 GGGGGSNTCFNCGKSGHFARECPDAP 263
           GGGGG+NTCFNCGKSGHFARECPDAP
Sbjct: 241 GGGGGANTCFNCGKSGHFARECPDAP 261

[Close]

BLAST of MS021033 vs. ExPASy TrEMBL
Match: A0A5D3CJR2 (Cold shock domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00680 PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 1.0e-124
Identity = 245/273 (89.74%), Postives = 251/273 (91.94%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNF--GGGGGGGRGGR----GGGYGFGGSGWRGGDRRNGS 120
           DGKSKAIEVV+LDGSSGNRRDNF  GGGGGGGRGGR    GGGYGFG  GWRGGDRRNG+
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGGGGGYGFG--GWRGGDRRNGN 120

Query: 121 SGAGGAGCYHCGEQGHLARDCTRASNR---GGGGGGGCFTCGEVGHLARDCPRGNS--GG 180
           SG GG GCY CGEQGHLARDCTR SNR   GGGGGGGCFTCGEVGHLARDCPRGNS  GG
Sbjct: 121 SGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGG 180

Query: 181 GGGAGAGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNS- 240
           GGG+G GACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGH+AR+C NESR S 
Sbjct: 181 GGGSGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSG 240

Query: 241 GGTGRFGGGGGGGSNTCFNCGKSGHFARECPDA 262
           GG GRFGGGGGGGSNTCFNCGKSGHFARECPDA
Sbjct: 241 GGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA 271

[Close]

BLAST of MS021033 vs. ExPASy TrEMBL
Match: E5RDD6 (Cold-shock DNA-binding family protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 1.0e-124
Identity = 245/273 (89.74%), Postives = 251/273 (91.94%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNF--GGGGGGGRGGR----GGGYGFGGSGWRGGDRRNGS 120
           DGKSKAIEVV+LDGSSGNRRDNF  GGGGGGGRGGR    GGGYGFG  GWRGGDRRNG+
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGGGGGYGFG--GWRGGDRRNGN 120

Query: 121 SGAGGAGCYHCGEQGHLARDCTRASNR---GGGGGGGCFTCGEVGHLARDCPRGNS--GG 180
           SG GG GCY CGEQGHLARDCTR SNR   GGGGGGGCFTCGEVGHLARDCPRGNS  GG
Sbjct: 121 SGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGG 180

Query: 181 GGGAGAGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNS- 240
           GGG+G GACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGH+AR+C NESR S 
Sbjct: 181 GGGSGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSG 240

Query: 241 GGTGRFGGGGGGGSNTCFNCGKSGHFARECPDA 262
           GG GRFGGGGGGGSNTCFNCGKSGHFARECPDA
Sbjct: 241 GGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA 271

[Close]

BLAST of MS021033 vs. ExPASy TrEMBL
Match: A0A1S3BKK1 (cold shock domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103490693 PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 1.0e-124
Identity = 245/273 (89.74%), Postives = 251/273 (91.94%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNF--GGGGGGGRGGR----GGGYGFGGSGWRGGDRRNGS 120
           DGKSKAIEVV+LDGSSGNRRDNF  GGGGGGGRGGR    GGGYGFG  GWRGGDRRNG+
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGGGGGYGFG--GWRGGDRRNGN 120

Query: 121 SGAGGAGCYHCGEQGHLARDCTRASNR---GGGGGGGCFTCGEVGHLARDCPRGNS--GG 180
           SG GG GCY CGEQGHLARDCTR SNR   GGGGGGGCFTCGEVGHLARDCPRGNS  GG
Sbjct: 121 SGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGG 180

Query: 181 GGGAGAGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNS- 240
           GGG+G GACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGH+AR+C NESR S 
Sbjct: 181 GGGSGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSG 240

Query: 241 GGTGRFGGGGGGGSNTCFNCGKSGHFARECPDA 262
           GG GRFGGGGGGGSNTCFNCGKSGHFARECPDA
Sbjct: 241 GGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA 271

[Close]

BLAST of MS021033 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 213.0 bits (541), Expect = 2.9e-55
Identity = 148/298 (49.66%), Postives = 177/298 (59.40%), Query Frame = 0


Query: 5   RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R  G V WFSD KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65  KAIEVVSLDGSSGNRRDNFGGGGGGG-------------RGGRGGGYGFGGSGWRGGDRR 124
           KAIEV +  G S N+++N   G GG                G  GG  FGG    GG RR
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGG----GGGRR 129

Query: 125 NGSSGAGGAGCYHCGEQGHLARDCTRA--SNRGGGGGGG--CFTCGEVGHLARDCPRGNS 184
           +G  G     CY CG+ GH ARDC ++   N GGGGGGG  C++CGEVGHLA+DC  G+ 
Sbjct: 130 SGGEGE----CYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSG 189

Query: 185 ----GGGGGAGAG--ACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLAREC 244
               GGGGG G+G   CY CGG GH ARDC +   GGG+ GGGG  C+ CG  GH+A+ C
Sbjct: 190 GNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQN--GGGNVGGGGSTCYTCGGVGHIAKVC 249

Query: 245 PNESRNSGGTG-----RFGG----------------GGGGGSNTCFNCGKSGHFAREC 259
            ++  + GG G       GG                GGGGGSN CF CGK GHFAREC
Sbjct: 250 TSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297

[Close]

BLAST of MS021033 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 202.6 bits (514), Expect = 3.9e-52
Identity = 141/290 (48.62%), Postives = 168/290 (57.93%), Query Frame = 0


Query: 5   RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R TG V WF+ SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65  KAIEVVSLDGSSGNRRDNFGGGGGGGRGGRGGGYGFG-----------GSGWRGGDRRNG 124
           KA+ V +  G S  + +N  G G    GG  G Y  G           G G  GG+RR+ 
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRS- 129

Query: 125 SSGAGGAGCYHCGEQGHLARDCTRASN---RGG--GGGGGCFTCGEVGHLARDCPRGNSG 184
               GG GCY+CG+ GH ARDCT A N   RG   GG  GC+TCG+VGH+ARDC + + G
Sbjct: 130 ---RGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVG 189

Query: 185 GGGGAGA-----GACYNCGGFGHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHLAREC 244
            G   GA       CY CG  GH ARDC +  A G   SGGGG G C++CG  GH+AR+C
Sbjct: 190 NGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC 249

Query: 245 PNESRNS------GGTGRF-------GGGGGGGSNTCFNCGKSGHFAREC 259
             + + S      GG+G         G GGGG  N C+ CGK GHFAREC
Sbjct: 250 ATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295

[Close]

BLAST of MS021033 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 143.7 bits (361), Expect = 2.1e-34
Identity = 108/232 (46.55%), Postives = 129/232 (55.60%), Query Frame = 0


Query: 4   ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           ER  G V+WF   KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ +
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 64  SKAIEVVSLDGS---------SGNRRDNFGGGGGGGRGGRGGGYGFGGSGWRGGDRRNGS 123
            KAI+V   DG+         S   R  FGGG GGGRG  GGGYG GG G+ G     G 
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGS-GGGYGGGGGGYGG----RGG 128

Query: 124 SGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAG 183
            G GG+ CY CGE GH+ARDC+      GGGG G                   GGGGG G
Sbjct: 129 GGRGGSDCYKCGEPGHMARDCSE-----GGGGYG-------------------GGGGGYG 188

Query: 184 AGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESR 227
            G  Y  GG G+        G GG  GGGGGG C++CGE GH AR+C +  R
Sbjct: 189 GGGGYGGGGGGY--------GGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]

BLAST of MS021033 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 136.0 bits (341), Expect = 4.5e-32
Identity = 105/221 (47.51%), Postives = 123/221 (55.66%), Query Frame = 0


Query: 4   ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           +R  G V+WF   KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 64  SKAIEVVSLDGS--SGNRRDNFGGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGAG 123
            KAIEV   DG+   GN       GGGG  GGRG   GFGG G RGG R  GS G GG G
Sbjct: 73  PKAIEVSGPDGAPVQGN------SGGGGSSGGRG---GFGGGGGRGGGRGGGSYG-GGYG 132

Query: 124 CYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNC 183
               G +G            GGGG   CF CGE GH+AR+C +G  G  GG G G     
Sbjct: 133 GRGSGGRG------------GGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGG----- 192

Query: 184 GGFGHLARDCNRGGAGGGSGGGGGG-GCFNCGEYGHLAREC 222
                      R G+GGG GGGGGG  C++CGE GH AR+C
Sbjct: 193 -----------RYGSGGGGGGGGGGLSCYSCGESGHFARDC 195

[Close]

BLAST of MS021033 vs. TAIR 10
Match: AT2G36120.1 (Glycine-rich protein family )

HSP 1 Score: 43.5 bits (101), Expect = 3.0e-04
Identity = 80/185 (43.24%), Postives = 89/185 (48.11%), Query Frame = 0


Query: 74  GSSGNRRDNFGGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLAR 133
           G+ G+   + GGGGGGG GG  GG G GG G  GG    G SG GG   Y  GE G    
Sbjct: 71  GAGGHGEGHIGGGGGGGHGGGAGGGGGGGPG--GG--YGGGSGEGGGAGYGGGEAG---- 130

Query: 134 DCTRASNRGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNR 193
                   GGGGGGG    G  G  A     G  GGG GAGAG  Y  GG G      + 
Sbjct: 131 ------GHGGGGGGGAGGGGGGGGGAHG---GGYGGGQGAGAGGGYGGGGAGG-----HG 190

Query: 194 GGAGGGSGGGGGGGCFNCGEY--GHLARECPNESRNSG-GTGRFGGGGGGGSNTCFNCGK 253
           GG GGG+GGGGGGG    G +  G+ A     E    G G G  GGGGGGG  +    G 
Sbjct: 191 GGGGGGNGGGGGGGSGEGGAHGGGYGAGGGAGEGYGGGAGAGGHGGGGGGGGGSGGGGGG 233

Query: 254 SGHFA 256
            G +A
Sbjct: 251 GGGYA 233

The following BLAST results are available for this feature:

BLAST of MS021033 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145255.1	1.2e-140	99.24	cold shock domain-containing protein 3 [Momordica charantia]	[more]
KAG6596667.1	1.0e-126	92.48	Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7028203.1	1.5e-125	92.48	Cold shock protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023540854.1	1.2e-124	91.42	cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo] >XP_023...	[more]
XP_022948847.1	1.6e-124	91.73	cold shock protein 1-like [Cucurbita moschata] >XP_022948857.1 cold shock protei...	[more]

BLAST of MS021033 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94C69	4.1e-54	49.66	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
O65639	5.5e-51	48.62	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]
P27484	8.2e-39	48.09	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
Q41188	3.0e-33	46.55	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]
Q38896	6.3e-31	47.51	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]

BLAST of MS021033 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTY3	5.9e-141	99.24	cold shock domain-containing protein 3 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1GAE9	7.8e-125	91.73	cold shock protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111452385 PE=4 SV=...	[more]
A0A5D3CJR2	1.0e-124	89.74	Cold shock domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
E5RDD6	1.0e-124	89.74	Cold-shock DNA-binding family protein OS=Cucumis melo subsp. melo OX=412675 PE=4...	[more]
A0A1S3BKK1	1.0e-124	89.74	cold shock domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103490693 P...	[more]

BLAST of MS021033 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17870.1	2.9e-55	49.66	cold shock domain protein 3	[more]
AT4G36020.1	3.9e-52	48.62	cold shock domain protein 1	[more]
AT4G38680.1	2.1e-34	46.55	glycine rich protein 2	[more]
AT2G21060.1	4.5e-32	47.51	glycine-rich protein 2B	[more]
AT2G36120.1	3.0e-04	43.24	Glycine-rich protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 8..23 score: 56.18 coord: 29..38 score: 59.44 coord: 44..62 score: 40.09
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 7..71 e-value: 4.7E-22 score: 77.6
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 5..71 score: 29.305492
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 7..69 e-value: 4.97658E-24 score: 89.9454
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 7..72 e-value: 9.3E-24 score: 94.9
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 244..260 e-value: 5.9E-6 score: 35.8 coord: 148..164 e-value: 2.6E-5 score: 33.7 coord: 177..193 e-value: 4.0E-4 score: 29.7 coord: 121..137 e-value: 3.4E-4 score: 29.9 coord: 207..223 e-value: 7.4E-6 score: 35.5
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 207..223 e-value: 1.2E-7 score: 31.5 coord: 243..259 e-value: 5.1E-8 score: 32.7 coord: 148..163 e-value: 1.1E-7 score: 31.6 coord: 177..191 e-value: 3.3E-6 score: 26.9 coord: 121..136 e-value: 1.4E-6 score: 28.1
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 149..164 score: 11.086722
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 245..260 score: 11.432861
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 208..223 score: 11.251551
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 122..137 score: 10.95486
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 178..191 score: 10.476859
None	No IPR available	GENE3D	2.40.50.140		coord: 1..70 e-value: 2.5E-24 score: 86.9
None	No IPR available	GENE3D	4.10.60.10		coord: 101..144 e-value: 1.7E-6 score: 29.8
None	No IPR available	GENE3D	4.10.60.10		coord: 204..230 e-value: 4.8E-8 score: 34.5 coord: 239..262 e-value: 1.6E-8 score: 36.0 coord: 145..171 e-value: 1.4E-7 score: 33.0 coord: 173..200 e-value: 1.4E-5 score: 26.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..103
None	No IPR available	PANTHER	PTHR46565:SF9	COLD SHOCK DOMAIN-CONTAINING PROTEIN 3-LIKE	coord: 142..260 coord: 1..202
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 142..260 coord: 1..202
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 19..38
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 4..74
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 170..225
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 112..166
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 227..260

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS021033.1	MS021033.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding