MS021030 (gene) Bitter gourd (TR) v1

Overview
NameMS021030
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold290: 652594 .. 653010 (-)
RNA-Seq ExpressionMS021030
SyntenyMS021030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAACCAAAATGGAGATCAAATGGACGATGAAAAGGAGGTTGGGATTAAGGGAGCTGTATGGAACATTGCGATTGAAAGAGGAGGAATCAGAGGTTAGAAAGAACTTAATTGAAAGGTTACCACCCAGCAAAGTTAAGAAGGCGATGACTGACATAGAGAATGGAGTGAAAATCACTCTATTCGATGTAAGCATGAACAAAAAAATGGAAAGAATCATGAGGAGAGTTGCCCCGGAAGAATATCATATCGAATGGGACACCGAAGACAAAGGGTATGTGCTCGGAGATCAGATTTTGATGTGTTGGGACTCAAACAATGAACAATTATGTTACAAGGTCCTTGACGTTTCTATTCTTAGAATTAATCCGCAAATGTACTCTGATACTTTAGCAAGTAGTTCTTCTTCACTTAAGAAA

mRNA sequence

GAAACCAAAATGGAGATCAAATGGACGATGAAAAGGAGGTTGGGATTAAGGGAGCTGTATGGAACATTGCGATTGAAAGAGGAGGAATCAGAGGTTAGAAAGAACTTAATTGAAAGGTTACCACCCAGCAAAGTTAAGAAGGCGATGACTGACATAGAGAATGGAGTGAAAATCACTCTATTCGATGTAAGCATGAACAAAAAAATGGAAAGAATCATGAGGAGAGTTGCCCCGGAAGAATATCATATCGAATGGGACACCGAAGACAAAGGGTATGTGCTCGGAGATCAGATTTTGATGTGTTGGGACTCAAACAATGAACAATTATGTTACAAGGTCCTTGACGTTTCTATTCTTAGAATTAATCCGCAAATGTACTCTGATACTTTAGCAAGTAGTTCTTCTTCACTTAAGAAA

Coding sequence (CDS)

GAAACCAAAATGGAGATCAAATGGACGATGAAAAGGAGGTTGGGATTAAGGGAGCTGTATGGAACATTGCGATTGAAAGAGGAGGAATCAGAGGTTAGAAAGAACTTAATTGAAAGGTTACCACCCAGCAAAGTTAAGAAGGCGATGACTGACATAGAGAATGGAGTGAAAATCACTCTATTCGATGTAAGCATGAACAAAAAAATGGAAAGAATCATGAGGAGAGTTGCCCCGGAAGAATATCATATCGAATGGGACACCGAAGACAAAGGGTATGTGCTCGGAGATCAGATTTTGATGTGTTGGGACTCAAACAATGAACAATTATGTTACAAGGTCCTTGACGTTTCTATTCTTAGAATTAATCCGCAAATGTACTCTGATACTTTAGCAAGTAGTTCTTCTTCACTTAAGAAA

Protein sequence

ETKMEIKWTMKRRLGLRELYGTLRLKEEESEVRKNLIERLPPSKVKKAMTDIENGVKITLFDVSMNKKMERIMRRVAPEEYHIEWDTEDKGYVLGDQILMCWDSNNEQLCYKVLDVSILRINPQMYSDTLASSSSSLKK
Homology
[Close]
BLAST of MS021030 vs. NCBI nr
Match: KAG6575830.1 (hypothetical protein SDJN03_26469, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.6 bits (200), Expect = 5.7e-12
Identity = 41/109 (37.61%), Postives = 68/109 (62.39%), Query Frame = 0 

Query: 8   WTMKRRLGLRELYGTLRLKE--EESEVRKNLIERLPPSKVKKAMTDIENGVKITLFDVSM 67
           WTM ++L   ++ G L+L+E  E++++R NL    P SKV+     + + V+I L+DV+M
Sbjct: 5   WTMIKKLEDADMNGLLQLREDDEDADIRANLFNWWPRSKVRDLKRVVGSEVRIILYDVNM 64

Query: 68  NKKMERIMRRVAPEEYHIEWDTEDKGYVLGDQILMCWDSNNEQLCYKVL 115
           ++ ++  MR +    YHIEWD ++K Y  GD +LM WD    +L YK++
Sbjct: 65  DQAIQTTMRWLGMARYHIEWDIQNKPYSSGDDMLMFWDLRYNRLAYKII 113

[Close]
BLAST of MS021030 vs. NCBI nr
Match: KAG6575832.1 (hypothetical protein SDJN03_26471, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-11
Identity = 49/133 (36.84%), Postives = 74/133 (55.64%), Query Frame = 0 

Query: 4   MEIKWTMKRRLGLRELYGTLRLKEE--ESEVRKNLIERLPPSKVKKAMTDIENGVKITLF 63
           M  +WTM ++L   ++ G L+L+E+  ++++  NL      SKV+     I N  KITLF
Sbjct: 1   MTERWTMIKKLQEADMNGLLQLREDDVDTDINTNLFRWWSRSKVRDLKKQIGNEAKITLF 60

Query: 64  DVSMNKKMERIMRRVAPEEYHIEWDTEDKGYVLGDQILMCWDSNNEQLCYKVLDVSILRI 123
           D + N+ M   +R +    YHIEWD ++K Y  G  +LM WD    +L YKVL +     
Sbjct: 61  DENTNEVMHTTIRWLGTPRYHIEWDVKNKPYASGQDMLMGWDLKYNRLAYKVLQIPF--- 120

Query: 124 NPQMYSDTLASSS 135
            P+M SD  +S+S
Sbjct: 121 -PEM-SDAGSSTS 128

The following BLAST results are available for this feature:
BLAST of MS021030 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6575830.15.7e-1237.61hypothetical protein SDJN03_26469, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575832.11.3e-1136.84hypothetical protein SDJN03_26471, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of MS021030 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS021030 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS021030 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021030.1MS021030.1mRNA