MS021027 (gene) Bitter gourd (TR) v1

Overview
NameMS021027
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold290: 637977 .. 638390 (-)
RNA-Seq ExpressionMS021027
SyntenyMS021027
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAAAAAATGGAGACCAATTGGACTATGGCAAAGCATGTGGAACAGAGAGAGATTAATAATGGAACATTGCTTTTGGATGAACAGGAATTGAAGCTGAAAGAGAATTTATTCAAATGGTGGCCACAAAGCGAAGTTGAGGATGTGATGACAAATATAGGGAAGGGAGTGAGAATTGCTATGTTTGATGTGAATGGATCTTGTCCCAAAAAGAAAACTATGAGGAGGATTTCCCAGGATCAGTTCACTATCGAATGGGACGTCAACAAAGATTATATGGTCGGAGATTGGATTTTTATGCGTTGGGATCAAGAGAACAAGTGGTTTTGTTACGAGGTCATTTTAAACCCTTCTCTTAGAACGAATCCACAACTGTCGGGTGCTTCTTCAAGCCGATCTTCTCGGGTCAAGAAA

mRNA sequence

AAGAAAAAAATGGAGACCAATTGGACTATGGCAAAGCATGTGGAACAGAGAGAGATTAATAATGGAACATTGCTTTTGGATGAACAGGAATTGAAGCTGAAAGAGAATTTATTCAAATGGTGGCCACAAAGCGAAGTTGAGGATGTGATGACAAATATAGGGAAGGGAGTGAGAATTGCTATGTTTGATGTGAATGGATCTTGTCCCAAAAAGAAAACTATGAGGAGGATTTCCCAGGATCAGTTCACTATCGAATGGGACGTCAACAAAGATTATATGGTCGGAGATTGGATTTTTATGCGTTGGGATCAAGAGAACAAGTGGTTTTGTTACGAGGTCATTTTAAACCCTTCTCTTAGAACGAATCCACAACTGTCGGGTGCTTCTTCAAGCCGATCTTCTCGGGTCAAGAAA

Coding sequence (CDS)

AAGAAAAAAATGGAGACCAATTGGACTATGGCAAAGCATGTGGAACAGAGAGAGATTAATAATGGAACATTGCTTTTGGATGAACAGGAATTGAAGCTGAAAGAGAATTTATTCAAATGGTGGCCACAAAGCGAAGTTGAGGATGTGATGACAAATATAGGGAAGGGAGTGAGAATTGCTATGTTTGATGTGAATGGATCTTGTCCCAAAAAGAAAACTATGAGGAGGATTTCCCAGGATCAGTTCACTATCGAATGGGACGTCAACAAAGATTATATGGTCGGAGATTGGATTTTTATGCGTTGGGATCAAGAGAACAAGTGGTTTTGTTACGAGGTCATTTTAAACCCTTCTCTTAGAACGAATCCACAACTGTCGGGTGCTTCTTCAAGCCGATCTTCTCGGGTCAAGAAA

Protein sequence

KKKMETNWTMAKHVEQREINNGTLLLDEQELKLKENLFKWWPQSEVEDVMTNIGKGVRIAMFDVNGSCPKKKTMRRISQDQFTIEWDVNKDYMVGDWIFMRWDQENKWFCYEVILNPSLRTNPQLSGASSSRSSRVKK
Homology
[Close]
BLAST of MS021027 vs. NCBI nr
Match: KAG6575830.1 (hypothetical protein SDJN03_26469, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.7 bits (208), Expect = 6.7e-13
Identity = 44/114 (38.60%), Postives = 67/114 (58.77%), Query Frame = 0 

Query: 4   METNWTMAKHVEQREINNGTLLL--DEQELKLKENLFKWWPQSEVEDVMTNIGKGVRIAM 63
           M  +WTM K +E  ++ NG L L  D+++  ++ NLF WWP+S+V D+   +G  VRI +
Sbjct: 1   MAGDWTMIKKLEDADM-NGLLQLREDDEDADIRANLFNWWPRSKVRDLKRVVGSEVRIIL 60

Query: 64  FDVNGSCPKKKTMRRISQDQFTIEWDV-NKDYMVGDWIFMRWDQENKWFCYEVI 115
           +DVN     + TMR +   ++ IEWD+ NK Y  GD + M WD       Y++I
Sbjct: 61  YDVNMDQAIQTTMRWLGMARYHIEWDIQNKPYSSGDDMLMFWDLRYNRLAYKII 113

[Close]
BLAST of MS021027 vs. NCBI nr
Match: KAG6575832.1 (hypothetical protein SDJN03_26471, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-11
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 0 

Query: 4   METNWTMAKHVEQREINNGTLLL--DEQELKLKENLFKWWPQSEVEDVMTNIGKGVRIAM 63
           M   WTM K +++ ++ NG L L  D+ +  +  NLF+WW +S+V D+   IG   +I +
Sbjct: 1   MTERWTMIKKLQEADM-NGLLQLREDDVDTDINTNLFRWWSRSKVRDLKKQIGNEAKITL 60

Query: 64  FDVNGSCPKKKTMRRISQDQFTIEWDV-NKDYMVGDWIFMRWDQENKWFCYEVILNPSLR 123
           FD N +     T+R +   ++ IEWDV NK Y  G  + M WD +     Y+V+  P   
Sbjct: 61  FDENTNEVMHTTIRWLGTPRYHIEWDVKNKPYASGQDMLMGWDLKYNRLAYKVLQIPF-- 120

Query: 124 TNPQLSGASSSRS 134
             P++S A SS S
Sbjct: 121 --PEMSDAGSSTS 128

The following BLAST results are available for this feature:
BLAST of MS021027 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6575830.16.7e-1338.60hypothetical protein SDJN03_26469, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575832.12.2e-1135.34hypothetical protein SDJN03_26471, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of MS021027 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS021027 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS021027 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021027.1MS021027.1mRNA