MS021018 (gene) Bitter gourd (TR) v1

Overview
NameMS021018
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold290: 577968 .. 578024 (-)
RNA-Seq ExpressionMS021018
SyntenyMS021018
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGTACCTAAAGAACAGTGGGTGTGTTGGTATGTGTGTGAATATGTGCAAGATACCA

mRNA sequence

AGGTACCTAAAGAACAGTGGGTGTGTTGGTATGTGTGTGAATATGTGCAAGATACCA

Coding sequence (CDS)

AGGTACCTAAAGAACAGTGGGTGTGTTGGTATGTGTGTGAATATGTGCAAGATACCA

Protein sequence

RYLKNSGCVGMCVNMCKIP
Homology
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BLAST of MS021018 vs. TAIR 10
Match: AT1G64680.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits to 146 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 4.4e-06
Identity = 18/19 (94.74%), Postives = 19/19 (100.00%), Query Frame = 0 

Query: 1   RYLKNSGCVGMCVNMCKIP 20
           RYL+NSGCVGMCVNMCKIP
Sbjct: 167 RYLENSGCVGMCVNMCKIP 185

The following BLAST results are available for this feature:
BLAST of MS021018 vs.
Match NameE-valueIdentityDescription
BLAST of MS021018 vs.
Match NameE-valueIdentityDescription
BLAST of MS021018 vs.
Match NameE-valueIdentityDescription
BLAST of MS021018 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G64680.14.4e-0694.74unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025114Beta-carotene isomerase D27-like, C-terminalPFAMPF13225DUF4033coord: 1..19
e-value: 7.8E-8
score: 32.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021018.1MS021018.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005506 iron ion binding