MS021000 (gene) Bitter gourd (TR) v1

Overview
NameMS021000
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold290: 449774 .. 450133 (-)
RNA-Seq ExpressionMS021000
SyntenyMS021000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCTTGATCTTGAATCTGTACCTAGGAGCTCTGGGAATAACCTGGCTAGGTCCGAAGTGGAACTGACCTGGACTGTCGGTAAGAGGAGGCCCGTCGTCGTAAACGTAGCCTACGAGATGGCCGCAGCCATTGCACTTGATCTTGGTGCGCTTCCGCTGGATTCCCCAGTAATTGAGGGTCTCGAAGAATGGTCTGAGCTTGTCCTCCTTCTCGAGCCTGAACTTGGTGGAGTCGATCGACGAAAAGGAAAGAGTGCCCTTGTTTCCGGCCTCGAAGTAGAAATCCGGCGGGAAGAGATGACCGGAACTCAGATTCAGATCAGCTCCGCATTGTGTACAGCAGTAGATGGAAGCCATTGT

mRNA sequence

AGCCTTGATCTTGAATCTGTACCTAGGAGCTCTGGGAATAACCTGGCTAGGTCCGAAGTGGAACTGACCTGGACTGTCGGTAAGAGGAGGCCCGTCGTCGTAAACGTAGCCTACGAGATGGCCGCAGCCATTGCACTTGATCTTGGTGCGCTTCCGCTGGATTCCCCAGTAATTGAGGGTCTCGAAGAATGGTCTGAGCTTGTCCTCCTTCTCGAGCCTGAACTTGGTGGAGTCGATCGACGAAAAGGAAAGAGTGCCCTTGTTTCCGGCCTCGAAGTAGAAATCCGGCGGGAAGAGATGACCGGAACTCAGATTCAGATCAGCTCCGCATTGTGTACAGCAGTAGATGGAAGCCATTGT

Coding sequence (CDS)

AGCCTTGATCTTGAATCTGTACCTAGGAGCTCTGGGAATAACCTGGCTAGGTCCGAAGTGGAACTGACCTGGACTGTCGGTAAGAGGAGGCCCGTCGTCGTAAACGTAGCCTACGAGATGGCCGCAGCCATTGCACTTGATCTTGGTGCGCTTCCGCTGGATTCCCCAGTAATTGAGGGTCTCGAAGAATGGTCTGAGCTTGTCCTCCTTCTCGAGCCTGAACTTGGTGGAGTCGATCGACGAAAAGGAAAGAGTGCCCTTGTTTCCGGCCTCGAAGTAGAAATCCGGCGGGAAGAGATGACCGGAACTCAGATTCAGATCAGCTCCGCATTGTGTACAGCAGTAGATGGAAGCCATTGT

Protein sequence

SLDLESVPRSSGNNLARSEVELTWTVGKRRPVVVNVAYEMAAAIALDLGALPLDSPVIEGLEEWSELVLLLEPELGGVDRRKGKSALVSGLEVEIRREEMTGTQIQISSALCTAVDGSHC
Homology
BLAST of MS021000 vs. NCBI nr
Match: KAF5462937.1 (hypothetical protein F2P56_018900 [Juglans regia])

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-29
Identity = 77/118 (65.25%), Postives = 91/118 (77.12%), Query Frame = 0

Query: 2   LDLESVPRSSGNNLARSEVELTWTVGKRRPVVVNVAYEMAAAIALDLGALPLDSPVIEGL 61
           LDLE +P SSG +LAR+ VELT  V +RR VVV+VA + AAAIA DLG LPLD PVI+GL
Sbjct: 20  LDLEPIPGSSGYDLARTHVELTGAVCERRTVVVDVANKTAAAIAFDLGPLPLDPPVIDGL 79

Query: 62  EEWSELVLLLEPELGGVDRRKGKSALVSGLEVEIRREEMTGTQIQISSALCTAVDGSH 120
           EE S+LVLLLEPE G VD R+GK  LVSGLEVE+R EEM   ++++  AL  AVDGSH
Sbjct: 80  EEGSDLVLLLEPEFGVVDTREGKRTLVSGLEVEVRWEEMHCAKVEVGPALRAAVDGSH 137

BLAST of MS021000 vs. NCBI nr
Match: KAG4993660.1 (hypothetical protein JHK86_030487 [Glycine max])

HSP 1 Score: 114.0 bits (284), Expect = 9.0e-22
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 0

Query: 16  ARSEVELTWTVGKRRPVVVNVAYEMAAAIALDLGALPLDSPVIEGLEEWSELVLLLEPEL 75
           AR+ V+LT T+GKR  +V++VA E    +ALDLG LPLDSPV++G EE ++LVLLLE EL
Sbjct: 217 ARTHVKLTGTIGKRWTIVIDVAKETVTGVALDLGPLPLDSPVVDGFEEGAKLVLLLELEL 276

Query: 76  GGVDRRKGKSALVSGLEVEIRREEMTGTQIQISSALCTAVDGSH 120
           GGV   +G  ALV+G EVE+ R  M+G +IQ+ SAL TAV G H
Sbjct: 277 GGVHGGEGDGALVAGFEVEVWRVGMSGVKIQVGSALRTAVHGGH 320

BLAST of MS021000 vs. NCBI nr
Match: KAG5123654.1 (hypothetical protein JHK82_030391 [Glycine max])

HSP 1 Score: 114.0 bits (284), Expect = 9.0e-22
Identity = 60/103 (58.25%), Postives = 76/103 (73.79%), Query Frame = 0

Query: 17  RSEVELTWTVGKRRPVVVNVAYEMAAAIALDLGALPLDSPVIEGLEEWSELVLLLEPELG 76
           R+ V+LT T+GKR  +V++VA E    +ALDLG LPLDSPV++G EE ++LVLLLE ELG
Sbjct: 239 RTHVKLTGTIGKRWTIVIDVAKETVTGVALDLGPLPLDSPVVDGFEEGAKLVLLLELELG 298

Query: 77  GVDRRKGKSALVSGLEVEIRREEMTGTQIQISSALCTAVDGSH 120
           GV   +G  ALV+G EVE+ R  M+G QIQ+ SAL TAV G H
Sbjct: 299 GVHDGEGDGALVAGFEVEVWRVGMSGVQIQVGSALRTAVHGGH 341

BLAST of MS021000 vs. NCBI nr
Match: KHN41865.1 (L-ascorbate peroxidase 3, peroxisomal [Glycine soja])

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-21
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 0

Query: 16  ARSEVELTWTVGKRRPVVVNVAYEMAAAIALDLGALPLDSPVIEGLEEWSELVLLLEPEL 75
           AR+ V+LT T+GKR  +V++VA E    +ALDLG LPLDSPV++G EE ++LVLLLE EL
Sbjct: 217 ARTHVKLTGTIGKRWTIVIDVAKETVTGVALDLGPLPLDSPVVDGFEEGAKLVLLLELEL 276

Query: 76  GGVDRRKGKSALVSGLEVEIRREEMTGTQIQISSALCTAVDGSH 120
           GGV   +G  ALV+G EVE+ R  M+G +IQ+ SAL TAV G H
Sbjct: 277 GGVRDGEGDGALVAGFEVEVWRVGMSGVKIQVGSALRTAVHGGH 320

BLAST of MS021000 vs. NCBI nr
Match: KAG4988045.1 (hypothetical protein JHK85_031028 [Glycine max] >KAG5145072.1 hypothetical protein JHK84_030615 [Glycine max])

HSP 1 Score: 112.1 bits (279), Expect = 3.4e-21
Identity = 59/103 (57.28%), Postives = 76/103 (73.79%), Query Frame = 0

Query: 17  RSEVELTWTVGKRRPVVVNVAYEMAAAIALDLGALPLDSPVIEGLEEWSELVLLLEPELG 76
           R+ V+LT T+GKR  +V++VA E    +ALDLG LPLDSPV++G EE ++LVLLLE ELG
Sbjct: 239 RTHVKLTGTIGKRWTIVIDVAKETVTGVALDLGPLPLDSPVVDGFEEGAKLVLLLELELG 298

Query: 77  GVDRRKGKSALVSGLEVEIRREEMTGTQIQISSALCTAVDGSH 120
           GV   +G  ALV+G EVE+ R  M+G +IQ+ SAL TAV G H
Sbjct: 299 GVRDGEGDGALVAGFEVEVWRVGMSGVKIQVGSALRTAVHGGH 341

BLAST of MS021000 vs. ExPASy TrEMBL
Match: A5CB28 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034433 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.2e-21
Identity = 58/97 (59.79%), Postives = 76/97 (78.35%), Query Frame = 0

Query: 20  VELTWTVGKRRPVVVNVAYEMAAAIALDLGALPLDSPVIEGLEEWSELVLLLEPELGGVD 79
           +ELT TVG+RR ++V+VA E A AIALDLG LPLDSPVI+GLE+  +LVL LE EL GVD
Sbjct: 1   MELTGTVGERRTIIVDVANETATAIALDLGPLPLDSPVIQGLEKGPDLVLFLESELXGVD 60

Query: 80  RRKGKSALVSGLEVEIRREEMTGTQIQISSALCTAVD 117
             +G+ A V+G+EVE+R EE+ G ++++ SA  TAVD
Sbjct: 61  ACEGEGAFVAGVEVEVRWEEVGGVKVEVGSAFPTAVD 97

BLAST of MS021000 vs. ExPASy TrEMBL
Match: A0A6A2WCL8 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117012pilonHSYRG00019 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16
Identity = 50/97 (51.55%), Postives = 71/97 (73.20%), Query Frame = 0

Query: 2   LDLESVPRSSGNNLARSEVELTWTVGKRRPVVVNVAYEMAAAIALDLGALPLDSPVIEGL 61
           L LE++P+ SG++LA  ++ LT T+ +RR +++N+ ++  A I LDLG++P+ SPVI GL
Sbjct: 14  LGLEAIPKGSGDHLAGPKMPLTETICERRAIIINMTHKFPATITLDLGSVPVGSPVINGL 73

Query: 62  EEWSELVLLLEPELGGVDRRKGKSALVSGLEVEIRRE 99
           EE  ELVL LE E+G +D  + K ALVS LEVEI RE
Sbjct: 74  EERPELVLFLEVEVGLIDHGERKGALVSRLEVEIWRE 110

BLAST of MS021000 vs. ExPASy TrEMBL
Match: A0A498HVY7 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_029681 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-11
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 0

Query: 45  ALDLGALPLDSPVIEGLEEWSELVLLLEPELGGVDRRKGKSALVSGLEVEIRREEMTGTQ 104
           ALDL   PLD PV+  LEE S+LVLL+EPELG VDRRK   +LVSGLE E+RR E+   +
Sbjct: 166 ALDLRPRPLDPPVVSSLEERSDLVLLVEPELGCVDRRKRHRSLVSGLEEEVRRIEIRSGK 225

Query: 105 IQISSALCTAVD 117
           +Q+ SAL   VD
Sbjct: 226 VQVGSALRAGVD 237

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF5462937.11.2e-2965.25hypothetical protein F2P56_018900 [Juglans regia][more]
KAG4993660.19.0e-2257.69hypothetical protein JHK86_030487 [Glycine max][more]
KAG5123654.19.0e-2258.25hypothetical protein JHK82_030391 [Glycine max][more]
KHN41865.11.2e-2157.69L-ascorbate peroxidase 3, peroxisomal [Glycine soja][more]
KAG4988045.13.4e-2157.28hypothetical protein JHK85_031028 [Glycine max] >KAG5145072.1 hypothetical prote... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A5CB282.2e-2159.79Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034433 PE=4 SV=1[more]
A0A6A2WCL81.2e-1651.55Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117012pilon... [more]
A0A498HVY71.2e-1159.72Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_029681 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS021000.1MS021000.1mRNA