MS020986 (gene) Bitter gourd (TR) v1

Overview


Name	MS020986
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold290: 388482 .. 388695 (-)
RNA-Seq Expression	MS020986
Synteny	MS020986

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCTTAATTTTTATGGATCAAACGGCACAAAAAAAGATGGAAGGGAAGAATCTTGGGGGCAGAAAAGAGACAGAGAAACAGAATATTTAAAAGGTCACCTAAATTGCAGAACACTGAACATGTTCACTGGAAACAGATGGGGTGGAGGAAGAAGACAAGGCTTTCAAGGATCTAGCATGTGACCGTACAGTTCAAAAGGTACGCATTATT

mRNA sequence

ATGGTGCTTAATTTTTATGGATCAAACGGCACAAAAAAAGATGGAAGGGAAGAATCTTGGGGGCAGAAAAGAGACAGAGAAACAGAATATTTAAAAGGTCACCTAAATTGCAGAACACTGAACATGTTCACTGGAAACAGATGGGAGGAAGAAGACAAGGCTTTCAAGGATCTAGCATGTGACCGTACAGTTCAAAAGGTACGCATTATT

Coding sequence (CDS)

ATGGTGCTTAATTTTTATGGATCAAACGGCACAAAAAAAGATGGAAGGGAAGAATCTTGGGGGCAGAAAAGAGACAGAGAAACAGAATATTTAAAAGGTCACCTAAATTGCAGAACACTGAACATGTTCACTGGAAACAGATGGGAGGAAGAAGACAAGGCTTTCAAGGATCTAGCATGTGACCGTACAGTTCAAAAGGTACGCATTATT

Protein sequence

MVLNFYGSNGTKKDGREESWGQKRDRETEYLKGHLNCRTLNMFTGNRWEEEDKAFKDLACDRTVQKVRII

Homology

[Close]

BLAST of MS020986 vs. NCBI nr
Match: XP_038903246.1 (uncharacterized protein LOC120089891 isoform X1 [Benincasa hispida])

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-15
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1   MVLNFYGSNGTKKDGREESWGQKRDRETEYLK-GHLNCRTLNMFTGNRW-EEEDKAFKDL 60
           ++LNF+GSN TKKDGR ESW Q+RDR     + GH++CRTLN++  N+W EEEDKAFKD 
Sbjct: 115 VLLNFFGSNCTKKDGRRESWRQRRDRNRILKRGGHVHCRTLNLYIENKWIEEEDKAFKDP 174

Query: 61  ACDRTVQK 67
           +CDRTVQK
Sbjct: 175 SCDRTVQK 182

[Close]

BLAST of MS020986 vs. NCBI nr
Match: XP_038903247.1 (uncharacterized protein LOC120089891 isoform X2 [Benincasa hispida])

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-15
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1   MVLNFYGSNGTKKDGREESWGQKRDRETEYLK-GHLNCRTLNMFTGNRW-EEEDKAFKDL 60
           ++LNF+GSN TKKDGR ESW Q+RDR     + GH++CRTLN++  N+W EEEDKAFKD 
Sbjct: 115 VLLNFFGSNCTKKDGRRESWRQRRDRNRILKRGGHVHCRTLNLYIENKWIEEEDKAFKDP 174

Query: 61  ACDRTVQK 67
           +CDRTVQK
Sbjct: 175 SCDRTVQK 182

[Close]

BLAST of MS020986 vs. ExPASy TrEMBL
Match: A0A0A0L4V1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002430 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 1   MVLNFYGSNGTKKDGREESWGQKRDRETEYLKGHLNCRTLNMFTGNRW-EEEDKAFKDLA 60
           ++LNF+GSN TKKDGR ESWGQKRDR+    +     +   +   N+W EEEDK FK L 
Sbjct: 47  VLLNFFGSNCTKKDGRGESWGQKRDRKRVSKRRSRTLQNTELVHENKWIEEEDKTFKYLP 106

Query: 61  CDRTVQKV 68
           CDRTV KV
Sbjct: 107 CDRTVLKV 114

The following BLAST results are available for this feature:

BLAST of MS020986 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903246.1	1.6e-15	64.71	uncharacterized protein LOC120089891 isoform X1 [Benincasa hispida]	[more]
XP_038903247.1	1.6e-15	64.71	uncharacterized protein LOC120089891 isoform X2 [Benincasa hispida]	[more]

BLAST of MS020986 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS020986 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4V1	1.3e-10	55.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002430 PE=4 SV=1	[more]

BLAST of MS020986 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020986.1	MS020986.1	mRNA