MS020984 (gene) Bitter gourd (TR) v1

Overview


Name	MS020984
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold290: 380886 .. 381080 (+)
RNA-Seq Expression	MS020984
Synteny	MS020984

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TACCAAATCACCGGGAGAGATGCGGAAGTGATGAATCAAAGCGGAAGCAAGCTTGAGACAGCGGTAGTAAGTGTCGGCCCAAGTGAAGGCGCGAGTGCCGTAGATGATGGAGGTCCGGCCGCCGTAGAGGGCAGCGGCCCGCTTCAAGAAGGTGACCGGCGAGAGGGGCAGGAGATTCGCCGGGCAGTGAAGAAG

mRNA sequence

TACCAAATCACCGGGAGAGATGCGGAAGTGATGAATCAAAGCGGAAGCAAGCTTGAGACAGCGGTAGTAAGTGTCGGCCCAAGTGAAGGCGCGAGTGCCGTAGATGATGGAGGTCCGGCCGCCGTAGAGGGCAGCGGCCCGCTTCAAGAAGGTGACCGGCGAGAGGGGCAGGAGATTCGCCGGGCAGTGAAGAAG

Coding sequence (CDS)

TACCAAATCACCGGGAGAGATGCGGAAGTGATGAATCAAAGCGGAAGCAAGCTTGAGACAGCGGTAGTAAGTGTCGGCCCAAGTGAAGGCGCGAGTGCCGTAGATGATGGAGGTCCGGCCGCCGTAGAGGGCAGCGGCCCGCTTCAAGAAGGTGACCGGCGAGAGGGGCAGGAGATTCGCCGGGCAGTGAAGAAG

Protein sequence

YQITGRDAEVMNQSGSKLETAVVSVGPSEGASAVDDGGPAAVEGSGPLQEGDRREGQEIRRAVKK

Homology

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BLAST of MS020984 vs. ExPASy TrEMBL
Match: A0A0A0L0Z3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002410 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-07
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 1  YQITGRDAEVMNQSGSKLETAVVSVGPSEGASAVDDGGPAAVEGSGPLQEGDRREGQEIR 60
          YQI+G + E+M QSGSK E A +SVGP E +SAV++GG AAVEG G  +EGD  E  +I 
Sbjct: 17 YQISGGEVEMMKQSGSKGERAGISVGPREESSAVNEGGTAAVEGGGSFEEGDGGERAKIG 76

Query: 61 RAVKK 66
          R V K
Sbjct: 77 RTVVK 81

The following BLAST results are available for this feature:

BLAST of MS020984 vs.


Match Name	E-value	Identity	Description

BLAST of MS020984 vs.


Match Name	E-value	Identity	Description

BLAST of MS020984 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Z3	2.1e-07	56.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002410 PE=4 SV=1	[more]

BLAST of MS020984 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020984.1	MS020984.1	mRNA