MS020974 (gene) Bitter gourd (TR) v1

Overview


Name	MS020974
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	High mobility group protein
Location	scaffold290: 298275 .. 299255 (+)
RNA-Seq Expression	MS020974
Synteny	MS020974

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGCGGGAAATCCAAAGCGGCGCCTAAAAAGACCGACACTAAGTGAGTATATCGGTTGCTTTTGATTTTGATGTTTTGTGTGGAAGTGTGTTTCGGAGTAGGCGGTTGGATGGATCCTGCCTATGCGTTTTATTTGTTTGTTCTGTTCTCAGTTTTTTTCCTTTTTTTTTTCGTGTTTTGTTGTTTGATTTTGCTAGGTTGAAGAGCAAAAGTGTTGGAGCTAGTAAGAAATCGGCGAAGGCTGCGAAGGATCCTAACAAGCCGAAGAGGCCTGCCAGTGCTTTCTTCGTTTTCATGTATCTCTCTCGAGCTTGTCTTGAATTTTTCTTTTTCAGATCCGCGTTTTTTTATCGTTTAGGTTATTTTTATTTTGTATCGGATTTTTACTGTTTCGATGTTTTTGTTGATGAATATATAGGGAGGAATTCAGGAAACAGTACAAGAAGGAGCATCCTAATAACAAATCCGTGGCTGCTGTAAGTGATTTCAGATCTATGCGCTGATTTTTTTTCCGTCGATTTTTAGGAAATTCTTTGATTTGTAAACGCGTGCTATTTTGGTGAATAAACAGGTTGGAAAAGCTGGAGGTGATAAATGGAAGTCAATGTCAGAAGCTGTAAGTATTTTAATGGAAACTGATTATATTTTAACAAAATGGAATCAAATTACTTGTTGCTCATATGTTCCCTAATATTACAGGAGAAAGCTCCTTACATAAACAAGGCTGAGAAAAGGAAGACTGAGTACAATAAGAGCATGCAGGCTTATAATAAGAGACTTGTATGCCCTATTATCCTATTTTCATTCTCAATGTCTTTGTTACACAATCATTAATTCTAATCTGTATAATCATGCACCATTCCATTAGGCGGAAGGAGAAAATGGAGCTGAAGAAGAAGAATCAGACAAGTCCAAATCAGAAGTCAACGACGACGATGATGAGGATGATGAGAGTGGAGAGGTTCAGATTCAACTT

mRNA sequence

ATGAAGGGCGGGAAATCCAAAGCGGCGCCTAAAAAGACCGACACTAAGTTGAAGAGCAAAAGTGTTGGAGCTAGTAAGAAATCGGCGAAGGCTGCGAAGGATCCTAACAAGCCGAAGAGGCCTGCCAGTGCTTTCTTCGTTTTCATGGAGGAATTCAGGAAACAGTACAAGAAGGAGCATCCTAATAACAAATCCGTGGCTGCTGTTGGAAAAGCTGGAGGTGATAAATGGAAGTCAATGTCAGAAGCTGAGAAAGCTCCTTACATAAACAAGGCTGAGAAAAGGAAGACTGAGTACAATAAGAGCATGCAGGCTTATAATAAGAGACTTGCGGAAGGAGAAAATGGAGCTGAAGAAGAAGAATCAGACAAGTCCAAATCAGAAGTCAACGACGACGATGATGAGGATGATGAGAGTGGAGAGGTTCAGATTCAACTT

Coding sequence (CDS)

ATGAAGGGCGGGAAATCCAAAGCGGCGCCTAAAAAGACCGACACTAAGTTGAAGAGCAAAAGTGTTGGAGCTAGTAAGAAATCGGCGAAGGCTGCGAAGGATCCTAACAAGCCGAAGAGGCCTGCCAGTGCTTTCTTCGTTTTCATGGAGGAATTCAGGAAACAGTACAAGAAGGAGCATCCTAATAACAAATCCGTGGCTGCTGTTGGAAAAGCTGGAGGTGATAAATGGAAGTCAATGTCAGAAGCTGAGAAAGCTCCTTACATAAACAAGGCTGAGAAAAGGAAGACTGAGTACAATAAGAGCATGCAGGCTTATAATAAGAGACTTGCGGAAGGAGAAAATGGAGCTGAAGAAGAAGAATCAGACAAGTCCAAATCAGAAGTCAACGACGACGATGATGAGGATGATGAGAGTGGAGAGGTTCAGATTCAACTT

Protein sequence

MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEEESDKSKSEVNDDDDEDDESGEVQIQL

Homology

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BLAST of MS020974 vs. NCBI nr
Match: XP_022145438.1 (HMG1/2-like protein [Momordica charantia])

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 92  MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 151

Query: 61  PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 120
           PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE
Sbjct: 152 PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 211

Query: 121 ESDKSKSEVNDDDDEDDESGE 142
           ESDKSKSEVNDDDDEDDESGE
Sbjct: 212 ESDKSKSEVNDDDDEDDESGE 232

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BLAST of MS020974 vs. NCBI nr
Match: XP_038904814.1 (HMG1/2-like protein [Benincasa hispida])

HSP 1 Score: 244.2 bits (622), Expect = 7.0e-61
Identity = 135/141 (95.74%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKKTDTKLKSKS GASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 120
           PNNKSVAAVGKAGGDKWKSMS+AEKAPYINKAEKRKTEYNKSMQAYNKR+AEG NGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDDEDDESGE 142
           ESDKSKSEVNDDD++DDESGE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGE 141

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BLAST of MS020974 vs. NCBI nr
Match: NP_001267705.1 (HMG1/2-like protein-like [Cucumis sativus] >XP_008448477.1 PREDICTED: HMG1/2-like protein [Cucumis melo] >AAY26151.1 high mobility group protein [Cucumis sativus] >KAE8649989.1 hypothetical protein Csa_010903 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 2.0e-60
Identity = 134/141 (95.04%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKKTDTKLKSKS GASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 120
           PNNKSVAAVGKAGGDKWKSMS+AEKAPYINKAEKRKTEYNKSMQAYNKR+AEG NGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDDEDDESGE 142
           ESDKSKSEVNDDD++DDESGE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGE 141

[Close]

BLAST of MS020974 vs. NCBI nr
Match: KAG6577813.1 (hypothetical protein SDJN03_25387, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 233.4 bits (594), Expect = 1.2e-57
Identity = 128/141 (90.78%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKKTDTKLKSK  GASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 12  MKGGKSKAAPKKTDTKLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 71

Query: 61  PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 120
           PNNKSVAAVGKAGGDKWKS+SEAEKAPY++KAEKRK EY K+MQAYNKR+AEG NGAEEE
Sbjct: 72  PNNKSVAAVGKAGGDKWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEE 131

Query: 121 ESDKSKSEVNDDDDEDDESGE 142
           ESDKSKSEVND+D++DDESGE
Sbjct: 132 ESDKSKSEVNDEDEDDDESGE 152

[Close]

BLAST of MS020974 vs. NCBI nr
Match: XP_022923434.1 (HMG1/2-like protein [Cucurbita moschata] >XP_022923435.1 HMG1/2-like protein [Cucurbita moschata] >XP_023007627.1 HMG1/2-like protein [Cucurbita maxima] >XP_023007628.1 HMG1/2-like protein [Cucurbita maxima] >XP_023552251.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.4 bits (594), Expect = 1.2e-57
Identity = 128/141 (90.78%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKKTDTKLKSK  GASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 120
           PNNKSVAAVGKAGGDKWKS+SEAEKAPY++KAEKRK EY K+MQAYNKR+AEG NGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDDEDDESGE 142
           ESDKSKSEVND+D++DDESGE
Sbjct: 121 ESDKSKSEVNDEDEDDDESGE 141

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BLAST of MS020974 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.2e-40
Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGA-SKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKE 60
           MKGGKSKA   K+D KL  K   A +KK+ KA KDPNKPKRP SAFFVFME+FRK YK++
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEK 60

Query: 61  HPNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEE 120
           HPNNKSVA VGKAGGDKWK ++ AEKAP+I+KAEKRK EY K++QAYNK+ A G   AEE
Sbjct: 61  HPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEE 120

Query: 121 EESDKSKSEVNDDDDEDDESGE 142
           EESDKS+SEVNDDD++ D SGE
Sbjct: 121 EESDKSRSEVNDDDEDQDGSGE 137

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BLAST of MS020974 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.5e-39
Identity = 95/147 (64.63%), Postives = 114/147 (77.55%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGASKKS------AKAAKDPNKPKRPASAFFVFMEEFRK 60
           MKGGKSK   K+ D KL     GA+ K+       KAAKDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  QYKKEHPNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGE 120
            + KEHP NK+V+AVGKA G KWK+MS+AEKAPY+ K+EKRK EY K+M+AYNK+ AEG 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 121 NGAEEEESDKSKSEVNDDDDEDDESGE 142
            G +EEES+KS SEVND+DD+++ SGE
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGE 147

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BLAST of MS020974 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.1e-35
Identity = 91/141 (64.54%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSKA  + T   +  K    +K +  AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKK---PAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 120
           P NKSVAAVGKAGG+KWKS+S++EKAPY+ KA+KRK EY K+M+AYNK+L EG    E+E
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDDEDDESGE 142
           ESDKS SEVND+DD +D S E
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEE 136

[Close]

BLAST of MS020974 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.6e-34
Identity = 87/141 (61.70%), Postives = 107/141 (75.89%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + +   +  K    + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 120
           P NKSVA VGKA GDKWKS+S++EKAPY+ KAEKRK EY K+++AYNK+L EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDDEDDESGE 142
           ESDKS SEVND+DD +D S E
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEE 139

[Close]

BLAST of MS020974 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-33
Identity = 95/149 (63.76%), Postives = 115/149 (77.18%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGAS-----KKSAKA--AKDPNKPKRPASAFFVFMEEFR 60
           MKGGKSK   KK +TKL     GA+     KK AK    KDPNKPKRP SAFFVFM +FR
Sbjct: 1   MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 60

Query: 61  KQYKKEHPNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEG 120
           +QYKK+HPNNKSVAAVGKA G++WKS+SE EKAPY+++A K+K EY  ++QAYNK+L EG
Sbjct: 61  EQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKL-EG 120

Query: 121 ENGAEEEESDKSKSEVND-DDDEDDESGE 142
           ++  +EE SDKSKSEVND D+DE+DE  E
Sbjct: 121 KD--DEEGSDKSKSEVNDEDEDEEDEEDE 146

[Close]

BLAST of MS020974 vs. ExPASy TrEMBL
Match: A0A6J1CVX4 (HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111014885 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.3e-64
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 92  MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 151

Query: 61  PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 120
           PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE
Sbjct: 152 PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 211

Query: 121 ESDKSKSEVNDDDDEDDESGE 142
           ESDKSKSEVNDDDDEDDESGE
Sbjct: 212 ESDKSKSEVNDDDDEDDESGE 232

[Close]

BLAST of MS020974 vs. ExPASy TrEMBL
Match: Q4ZH67 (High mobility group protein OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 9.8e-61
Identity = 134/141 (95.04%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKKTDTKLKSKS GASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 120
           PNNKSVAAVGKAGGDKWKSMS+AEKAPYINKAEKRKTEYNKSMQAYNKR+AEG NGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDDEDDESGE 142
           ESDKSKSEVNDDD++DDESGE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGE 141

[Close]

BLAST of MS020974 vs. ExPASy TrEMBL
Match: A0A1S3BJR7 (HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103490649 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 9.8e-61
Identity = 134/141 (95.04%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSK APKKTDTKLKSKS GASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 120
           PNNKSVAAVGKAGGDKWKSMS+AEKAPYINKAEKRKTEYNKSMQAYNKR+AEG NGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDDEDDESGE 142
           ESDKSKSEVNDDD++DDESGE
Sbjct: 121 ESDKSKSEVNDDDEDDDESGE 141

[Close]

BLAST of MS020974 vs. ExPASy TrEMBL
Match: A0A6J1KZ83 (HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111500202 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 6.0e-58
Identity = 128/141 (90.78%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKKTDTKLKSK  GASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 120
           PNNKSVAAVGKAGGDKWKS+SEAEKAPY++KAEKRK EY K+MQAYNKR+AEG NGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDDEDDESGE 142
           ESDKSKSEVND+D++DDESGE
Sbjct: 121 ESDKSKSEVNDEDEDDDESGE 141

[Close]

BLAST of MS020974 vs. ExPASy TrEMBL
Match: A0A6J1E6E0 (HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431129 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 6.0e-58
Identity = 128/141 (90.78%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKGGKSKAAPKKTDTKLKSK  GASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 120
           PNNKSVAAVGKAGGDKWKS+SEAEKAPY++KAEKRK EY K+MQAYNKR+AEG NGAEEE
Sbjct: 61  PNNKSVAAVGKAGGDKWKSLSEAEKAPYVSKAEKRKAEYTKTMQAYNKRIAEGGNGAEEE 120

Query: 121 ESDKSKSEVNDDDDEDDESGE 142
           ESDKSKSEVND+D++DDESGE
Sbjct: 121 ESDKSKSEVNDEDEDDDESGE 141

[Close]

BLAST of MS020974 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 151.4 bits (381), Expect = 5.7e-37
Identity = 92/143 (64.34%), Postives = 112/143 (78.32%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSKA  + T   +  K    +K +  AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKK---PAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 120
           P NKSVAAVGKAGG+KWKS+S++EKAPY+ KA+KRK EY K+M+AYNK+L EG    E+E
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDDEDDESGEVQ 144
           ESDKS SEVND+DD +D S EV+
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEEVR 138

[Close]

BLAST of MS020974 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 149.4 bits (376), Expect = 2.2e-36
Identity = 91/141 (64.54%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSKA  + T   +  K    +K +  AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKK---PAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 120
           P NKSVAAVGKAGG+KWKS+S++EKAPY+ KA+KRK EY K+M+AYNK+L EG    E+E
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDDEDDESGE 142
           ESDKS SEVND+DD +D S E
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEE 136

[Close]

BLAST of MS020974 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 146.4 bits (368), Expect = 1.8e-35
Identity = 87/141 (61.70%), Postives = 107/141 (75.89%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + +   +  K    + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 120
           P NKSVA VGKA GDKWKS+S++EKAPY+ KAEKRK EY K+++AYNK+L EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDDEDDESGE 142
           ESDKS SEVND+DD +D S E
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEE 139

[Close]

BLAST of MS020974 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 146.4 bits (368), Expect = 1.8e-35
Identity = 87/141 (61.70%), Postives = 107/141 (75.89%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + +   +  K    + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 120
           P NKSVA VGKA GDKWKS+S++EKAPY+ KAEKRK EY K+++AYNK+L EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDDEDDESGE 142
           ESDKS SEVND+DD +D S E
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEE 139

[Close]

BLAST of MS020974 vs. TAIR 10
Match: AT1G20693.3 (high mobility group B2 )

HSP 1 Score: 146.4 bits (368), Expect = 1.8e-35
Identity = 87/141 (61.70%), Postives = 107/141 (75.89%), Query Frame = 0


Query: 1   MKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60
           MKG KSK   + +   +  K    + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 61  PNNKSVAAVGKAGGDKWKSMSEAEKAPYINKAEKRKTEYNKSMQAYNKRLAEGENGAEEE 120
           P NKSVA VGKA GDKWKS+S++EKAPY+ KAEKRK EY K+++AYNK+L EG    E+E
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--EDE 120

Query: 121 ESDKSKSEVNDDDDEDDESGE 142
           ESDKS SEVND+DD +D S E
Sbjct: 121 ESDKSVSEVNDEDDAEDGSEE 139

The following BLAST results are available for this feature:

BLAST of MS020974 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145438.1	1.5e-63	100.00	HMG1/2-like protein [Momordica charantia]	[more]
XP_038904814.1	7.0e-61	95.74	HMG1/2-like protein [Benincasa hispida]	[more]
NP_001267705.1	2.0e-60	95.04	HMG1/2-like protein-like [Cucumis sativus] >XP_008448477.1 PREDICTED: HMG1/2-lik...	[more]
KAG6577813.1	1.2e-57	90.78	hypothetical protein SDJN03_25387, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022923434.1	1.2e-57	90.78	HMG1/2-like protein [Cucurbita moschata] >XP_022923435.1 HMG1/2-like protein [Cu...	[more]

BLAST of MS020974 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P40619	3.2e-40	70.42	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P26585	3.5e-39	64.63	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P93047	3.1e-35	64.54	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
O49596	2.6e-34	61.70	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P40620	1.3e-33	63.76	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]

BLAST of MS020974 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVX4	7.3e-64	100.00	HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111014885 PE=3 SV=1	[more]
Q4ZH67	9.8e-61	95.04	High mobility group protein OS=Cucumis sativus OX=3659 PE=2 SV=1	[more]
A0A1S3BJR7	9.8e-61	95.04	HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103490649 PE=3 SV=1	[more]
A0A6J1KZ83	6.0e-58	90.78	HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111500202 PE=3 SV=1	[more]
A0A6J1E6E0	6.0e-58	90.78	HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431129 PE=3 SV=1	[more]

BLAST of MS020974 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20696.3	5.7e-37	64.34	high mobility group B3	[more]
AT1G20696.1	2.2e-36	64.54	high mobility group B3	[more]
AT1G20693.1	1.8e-35	61.70	high mobility group B2	[more]
AT1G20693.2	1.8e-35	61.70	high mobility group B2	[more]
AT1G20693.3	1.8e-35	61.70	high mobility group B2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 89..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..146
None	No IPR available	PANTHER	PTHR46261:SF22	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 1..142
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 38..104 e-value: 1.46251E-17 score: 69.9641
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 37..108 e-value: 5.0E-27 score: 105.8
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 38..107 e-value: 2.9E-23 score: 82.1
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 38..107 score: 20.603992
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 33..110 e-value: 9.7E-27 score: 95.3
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 30..111
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020974.1	MS020974.1	mRNA