MS020916 (gene) Bitter gourd (TR) v1

Overview


Name	MS020916
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold382: 604507 .. 604929 (+)
RNA-Seq Expression	MS020916
Synteny	MS020916

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCGTAACAGTCGCACTTTGGTCACTGGTATCAGCTTTTGCATCTTTGTTATGCCAAATGCTTCGAACGGCCTCACGTGCCACATGGAGTGTGACGCCCGAGTCCAGAAAACCGCCAGGCGATTGATTATGCTCTTCCTCAGCGATCAAACCCAGAAGAAGATGTTGGGTAAAAACCAAATCCTTCGAAAGGGCCTTCGCTTCTCTCTGCGAAAATATCACAGCCTTAATCGCTCGTTCGGTGAACCGCTCAAAAATGGCGGAAACAACCGCAATTCTCGGCCGCCTCTTCCGCCGGAGTCTGCCGCCGATAAACCCATTTCGCGGACGAATGGAAGTGACAAAAGAAGGGGAAAAGGAGGAAACAAGATTGGAAGATGGGAACCCGTTGATTCGCCGTCCCGACAAATGGGAACTCGA

mRNA sequence

ATGAGGCGTAACAGTCGCACTTTGGTCACTGGTATCAGCTTTTGCATCTTTGTTATGCCAAATGCTTCGAACGGCCTCACGTGCCACATGGAGTGTGACGCCCGAGTCCAGAAAACCGCCAGGCGATTGATTATGCTCTTCCTCAGCGATCAAACCCAGAAGAAGATGTTGGGTAAAAACCAAATCCTTCGAAAGGGCCTTCGCTTCTCTCTGCGAAAATATCACAGCCTTAATCGCTCGTTCGGTGAACCGCTCAAAAATGGCGGAAACAACCGCAATTCTCGGCCGCCTCTTCCGCCGGAGTCTGCCGCCGATAAACCCATTTCGCGGACGAATGGAAGTGACAAAAGAAGGGGAAAAGGAGGAAACAAGATTGGAAGATGGGAACCCGTTGATTCGCCGTCCCGACAAATGGGAACTCGA

Coding sequence (CDS)

ATGAGGCGTAACAGTCGCACTTTGGTCACTGGTATCAGCTTTTGCATCTTTGTTATGCCAAATGCTTCGAACGGCCTCACGTGCCACATGGAGTGTGACGCCCGAGTCCAGAAAACCGCCAGGCGATTGATTATGCTCTTCCTCAGCGATCAAACCCAGAAGAAGATGTTGGGTAAAAACCAAATCCTTCGAAAGGGCCTTCGCTTCTCTCTGCGAAAATATCACAGCCTTAATCGCTCGTTCGGTGAACCGCTCAAAAATGGCGGAAACAACCGCAATTCTCGGCCGCCTCTTCCGCCGGAGTCTGCCGCCGATAAACCCATTTCGCGGACGAATGGAAGTGACAAAAGAAGGGGAAAAGGAGGAAACAAGATTGGAAGATGGGAACCCGTTGATTCGCCGTCCCGACAAATGGGAACTCGA

Protein sequence

MRRNSRTLVTGISFCIFVMPNASNGLTCHMECDARVQKTARRLIMLFLSDQTQKKMLGKNQILRKGLRFSLRKYHSLNRSFGEPLKNGGNNRNSRPPLPPESAADKPISRTNGSDKRRGKGGNKIGRWEPVDSPSRQMGTR

Homology

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BLAST of MS020916 vs. ExPASy TrEMBL
Match: A0A0A0K8I1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G184670 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 8.9e-43
Identity = 100/142 (70.42%), Postives = 111/142 (78.17%), Query Frame = 0


Query: 1   MRRNSRTLVTGISFCIFVMPNASNGLTCHMECDARVQKTARRLIMLFLSDQTQKKMLGKN 60
           M R+SRT+ T I F I VMPN +N L CHM+C   VQKTARRLIM FLS+QTQKKMLGKN
Sbjct: 1   MSRDSRTMKTSIRFRIIVMPNPTNSLACHMKCKTGVQKTARRLIMFFLSNQTQKKMLGKN 60

Query: 61  QILRKGLRFSLRKYHSLNRSFGEPLKNGGNNRNSR-PPLPPESAADKPISRTNGSDKRRG 120
           QILRKG R SLRKYHSLNRSF EPLKNG N+RN + PPL  +S AD+ IS   G +KRRG
Sbjct: 61  QILRKGFRLSLRKYHSLNRSFREPLKNGRNDRNPQPPPLLLDSTADETIS---GRNKRRG 120

Query: 121 KGGNKIGRWEPVDSPSRQMGTR 142
           K G KIGRWE +DSPSRQMG R
Sbjct: 121 KQGYKIGRWESIDSPSRQMGIR 139

The following BLAST results are available for this feature:

BLAST of MS020916 vs.


Match Name	E-value	Identity	Description

BLAST of MS020916 vs.


Match Name	E-value	Identity	Description

BLAST of MS020916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8I1	8.9e-43	70.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G184670 PE=4 SV=1	[more]

BLAST of MS020916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020916.1	MS020916.1	mRNA