MS020905 (gene) Bitter gourd (TR) v1

Overview


Name	MS020905
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Small nuclear ribonucleoprotein Sm D2
Location	scaffold382: 503463 .. 503966 (+)
RNA-Seq Expression	MS020905
Synteny	MS020905

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGTCTAGCAAGAACGAGGAAGAGGAATTCAACACTGGTCCACTTTCTGTTCTCATGATGAGTGTAAAAAACAACACTCAGGTAAGATTTCTGTTTCACAAAGTGGGAAAAGCTTGTGAATTACAGGCTTCTTATTAGTGAATAGGTTTTTAGCTTAAGGCCCAAAAGCTTTTTAAGTTTTTCATCAATTGCATAGGTTCTTATCAACTGTCGAAACAATAAAAAGCTTTTGGGACGAGTGAGAGCCTTCGACCGCCACTGTAACATGGTTTTGGAAAATGTCAGAGAAATGTGGACTGAGGTATGCATTCTAAAGCTTGTCATAATATTTCAACCCCTTGGTTTCTTAGAAGCATCTTGTGATGTGCCTTTTTATCTTCAATGGGTTAGGTCCCTAAAAGTGGAAAAGGGAAGAATAAAGCACAGCCTATAAACAAAGACAGATTCATCAGCAAGATGTTCTTGAGAGGAGACTCTGTTATTATAGTTCTCAGGAATCCCAAA

mRNA sequence

CAGTCTAGCAAGAACGAGGAAGAGGAATTCAACACTGGTCCACTTTCTGTTCTCATGATGAGTGTAAAAAACAACACTCAGGTTCTTATCAACTGTCGAAACAATAAAAAGCTTTTGGGACGAGTGAGAGCCTTCGACCGCCACTGTAACATGGTTTTGGAAAATGTCAGAGAAATGTGGACTGAGGTCCCTAAAAGTGGAAAAGGGAAGAATAAAGCACAGCCTATAAACAAAGACAGATTCATCAGCAAGATGTTCTTGAGAGGAGACTCTGTTATTATAGTTCTCAGGAATCCCAAA

Coding sequence (CDS)

CAGTCTAGCAAGAACGAGGAAGAGGAATTCAACACTGGTCCACTTTCTGTTCTCATGATGAGTGTAAAAAACAACACTCAGGTTCTTATCAACTGTCGAAACAATAAAAAGCTTTTGGGACGAGTGAGAGCCTTCGACCGCCACTGTAACATGGTTTTGGAAAATGTCAGAGAAATGTGGACTGAGGTCCCTAAAAGTGGAAAAGGGAAGAATAAAGCACAGCCTATAAACAAAGACAGATTCATCAGCAAGATGTTCTTGAGAGGAGACTCTGTTATTATAGTTCTCAGGAATCCCAAA

Protein sequence

QSSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK

Homology

[Close]

BLAST of MS020905 vs. NCBI nr
Match: XP_004146504.1 (small nuclear ribonucleoprotein Sm D2 [Cucumis sativus] >XP_008452073.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_008452074.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_008452075.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_022929177.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata] >XP_022985082.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima] >XP_023551877.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita pepo subsp. pepo] >KAE8649185.1 hypothetical protein Csa_014590 [Cucumis sativus])

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-46
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 2   SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 61
           +SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT
Sbjct: 9   TSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 68

Query: 62  EVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK 101
           EVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 69  EVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]

BLAST of MS020905 vs. NCBI nr
Match: KAA0044802.1 (small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa] >TYK16662.1 small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa])

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-46
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 2   SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 61
           +SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT
Sbjct: 35  TSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 94

Query: 62  EVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK 101
           EVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 95  EVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 133

[Close]

BLAST of MS020905 vs. NCBI nr
Match: KAG6577216.1 (U-box domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-46
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 2   SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 61
           +SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT
Sbjct: 812 TSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 871

Query: 62  EVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK 101
           EVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 872 EVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 910

[Close]

BLAST of MS020905 vs. NCBI nr
Match: XP_010269566.1 (PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform X1 [Nelumbo nucifera] >XP_010269567.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform X1 [Nelumbo nucifera] >XP_010269568.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform X1 [Nelumbo nucifera] >XP_010269569.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform X1 [Nelumbo nucifera] >DAD33278.1 TPA_asm: hypothetical protein HUJ06_012129 [Nelumbo nucifera])

HSP 1 Score: 195.7 bits (496), Expect = 1.9e-46
Identity = 95/100 (95.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   QSSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 60
           Q  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW
Sbjct: 11  QGGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 70

Query: 61  TEVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK 101
           TEVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 71  TEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 110

[Close]

BLAST of MS020905 vs. NCBI nr
Match: KAB1205886.1 (putative small nuclear ribonucleoprotein Sm D2 [Morella rubra])

HSP 1 Score: 195.7 bits (496), Expect = 1.9e-46
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 3   SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 62
           SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 8   SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 67

Query: 63  VPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK 101
           VPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 68  VPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 105

[Close]

BLAST of MS020905 vs. ExPASy Swiss-Prot
Match: Q3SZF8 (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.1e-44
Identity = 85/96 (88.54%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 4   KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 63
           K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEV
Sbjct: 18  KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77

Query: 64  PKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNP 100
           PKSGKGK K++P+NKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 78  PKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]

BLAST of MS020905 vs. ExPASy Swiss-Prot
Match: P62316 (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.1e-44
Identity = 85/96 (88.54%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 4   KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 63
           K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEV
Sbjct: 18  KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77

Query: 64  PKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNP 100
           PKSGKGK K++P+NKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 78  PKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]

BLAST of MS020905 vs. ExPASy Swiss-Prot
Match: P62317 (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.1e-44
Identity = 85/96 (88.54%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 4   KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 63
           K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEV
Sbjct: 18  KREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEV 77

Query: 64  PKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNP 100
           PKSGKGK K++P+NKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 78  PKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]

BLAST of MS020905 vs. ExPASy Swiss-Prot
Match: Q9VI10 (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=7227 GN=SmD2 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.6e-43
Identity = 82/97 (84.54%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 3   SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 62
           ++ EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE
Sbjct: 16  ARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTE 75

Query: 63  VPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNP 100
           +P++GKGK K +P+NKDRFISKMFLRGDSVI+VLRNP
Sbjct: 76  LPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112

[Close]

BLAST of MS020905 vs. ExPASy Swiss-Prot
Match: Q18786 (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239 GN=snr-4 PE=1 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 6.3e-40
Identity = 77/94 (81.91%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 6   EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 65
           E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK
Sbjct: 20  EDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPK 79

Query: 66  SGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNP 100
           +GKGK KA+ + KDRFISKMFLRGDSVI+V++NP
Sbjct: 80  TGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113

[Close]

BLAST of MS020905 vs. ExPASy TrEMBL
Match: A0A1S3BTT5 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo OX=3656 GN=LOC103493191 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.2e-47
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 2   SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 61
           +SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT
Sbjct: 9   TSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 68

Query: 62  EVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK 101
           EVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 69  EVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]

BLAST of MS020905 vs. ExPASy TrEMBL
Match: A0A5A7TNA0 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004930 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.2e-47
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 2   SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 61
           +SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT
Sbjct: 35  TSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 94

Query: 62  EVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK 101
           EVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 95  EVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 133

[Close]

BLAST of MS020905 vs. ExPASy TrEMBL
Match: A0A6J1J3W3 (Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita maxima OX=3661 GN=LOC111483160 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.2e-47
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 2   SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 61
           +SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT
Sbjct: 9   TSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 68

Query: 62  EVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK 101
           EVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 69  EVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]

BLAST of MS020905 vs. ExPASy TrEMBL
Match: A0A0A0KUK4 (Small nuclear ribonucleoprotein Sm D2 OS=Cucumis sativus OX=3659 GN=Csa_4G046730 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.2e-47
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 2   SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 61
           +SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT
Sbjct: 90  TSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 149

Query: 62  EVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK 101
           EVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 150 EVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 188

[Close]

BLAST of MS020905 vs. ExPASy TrEMBL
Match: A0A2N9FEF8 (Small nuclear ribonucleoprotein Sm D2 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17139 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.2e-47
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 2   SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 61
           +SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT
Sbjct: 11  ASKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 70

Query: 62  EVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK 101
           EVPK+GKGK KAQP+NKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 71  EVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 109

[Close]

BLAST of MS020905 vs. TAIR 10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 187.2 bits (474), Expect = 6.5e-48
Identity = 90/97 (92.78%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 4   KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 63
           K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 13  KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 72

Query: 64  PKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK 101
           PK+GKGK KA P+N+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 73  PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

[Close]

BLAST of MS020905 vs. TAIR 10
Match: AT2G47640.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 187.2 bits (474), Expect = 6.5e-48
Identity = 90/99 (90.91%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 2   SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 61
           + K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWT
Sbjct: 10  NGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWT 69

Query: 62  EVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK 101
           EVPK+GKGK KA P+N+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 70  EVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108

[Close]

BLAST of MS020905 vs. TAIR 10
Match: AT2G47640.3 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 187.2 bits (474), Expect = 6.5e-48
Identity = 90/99 (90.91%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 2   SSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 61
           + K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWT
Sbjct: 10  NGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWT 69

Query: 62  EVPKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK 101
           EVPK+GKGK KA P+N+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 70  EVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 108

[Close]

BLAST of MS020905 vs. TAIR 10
Match: AT2G47640.4 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 187.2 bits (474), Expect = 6.5e-48
Identity = 90/97 (92.78%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 4   KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 63
           K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 13  KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 72

Query: 64  PKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK 101
           PK+GKGK KA P+N+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 73  PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

[Close]

BLAST of MS020905 vs. TAIR 10
Match: AT3G62840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 187.2 bits (474), Expect = 6.5e-48
Identity = 90/97 (92.78%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 4   KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 63
           K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 13  KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 72

Query: 64  PKSGKGKNKAQPINKDRFISKMFLRGDSVIIVLRNPK 101
           PK+GKGK KA P+N+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 73  PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

The following BLAST results are available for this feature:

BLAST of MS020905 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146504.1	1.5e-46	95.96	small nuclear ribonucleoprotein Sm D2 [Cucumis sativus] >XP_008452073.1 PREDICTE...	[more]
KAA0044802.1	1.5e-46	95.96	small nuclear ribonucleoprotein Sm D2-like [Cucumis melo var. makuwa] >TYK16662....	[more]
KAG6577216.1	1.5e-46	95.96	U-box domain-containing protein 5, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_010269566.1	1.9e-46	95.00	PREDICTED: small nuclear ribonucleoprotein Sm D2-like isoform X1 [Nelumbo nucife...	[more]
KAB1205886.1	1.9e-46	96.94	putative small nuclear ribonucleoprotein Sm D2 [Morella rubra]	[more]

BLAST of MS020905 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3SZF8	1.1e-44	88.54	Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1	[more]
P62316	1.1e-44	88.54	Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=...	[more]
P62317	1.1e-44	88.54	Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV...	[more]
Q9VI10	1.6e-43	84.54	Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=722...	[more]
Q18786	6.3e-40	81.91	Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans OX=6239...	[more]

BLAST of MS020905 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BTT5	7.2e-47	95.96	Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo OX=3656 GN=LOC103493191 PE...	[more]
A0A5A7TNA0	7.2e-47	95.96	Small nuclear ribonucleoprotein Sm D2 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1J3W3	7.2e-47	95.96	Small nuclear ribonucleoprotein Sm D2 OS=Cucurbita maxima OX=3661 GN=LOC11148316...	[more]
A0A0A0KUK4	7.2e-47	95.96	Small nuclear ribonucleoprotein Sm D2 OS=Cucumis sativus OX=3659 GN=Csa_4G046730...	[more]
A0A2N9FEF8	7.2e-47	95.96	Small nuclear ribonucleoprotein Sm D2 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17...	[more]

BLAST of MS020905 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47640.1	6.5e-48	92.78	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.2	6.5e-48	90.91	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.3	6.5e-48	90.91	Small nuclear ribonucleoprotein family protein	[more]
AT2G47640.4	6.5e-48	92.78	Small nuclear ribonucleoprotein family protein	[more]
AT3G62840.1	6.5e-48	92.78	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 18..97 e-value: 5.3E-20 score: 82.5
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 21..95 e-value: 5.0E-19 score: 67.7
None	No IPR available	GENE3D	2.30.30.100		coord: 8..100 e-value: 4.5E-41 score: 140.5
None	No IPR available	PANTHER	PTHR12777:SF6	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2	coord: 3..100
IPR027248	Small nuclear ribonucleoprotein Sm D2	PANTHER	PTHR12777	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2	coord: 3..100
IPR027248	Small nuclear ribonucleoprotein Sm D2	CDD	cd01720	Sm_D2	coord: 10..99 e-value: 3.64663E-61 score: 179.064
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 13..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020905.1	MS020905.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0030532	small nuclear ribonucleoprotein complex