MS020773 (gene) Bitter gourd (TR) v1

Overview


Name	MS020773
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S26
Location	scaffold487: 368152 .. 369337 (+)
RNA-Seq Expression	MS020773
Synteny	MS020773

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGACTTTCAAGCGCAGGAATGGCGGGCGTAACAAGCTCGGCCGTGGACACGTCAAGTTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCCAAGGTATTACAATTACTGTTTTGCTTTCACACATCTTTAATGGCCGCTGCGGAAATTGGTCCTTTTTGTGTTTATTTAGTTTTCGGTTTTATGCTTTAGTGCAAGTATCGATGTTGCAACTGCGAGCGAGACAATCGAATTCGTGTCTACCGAGTTCTGCGGCTTTAATCTTGAATTTTGTATTATTTTGTTTTTTTGAGATGGTTTCTATGTTTTGCCTTACCTTCTGTATGTGTAGTTTTCTAGTTTTATATCAATGATATTTTGCTATATATCAAGCTTTTAAATATCAATGTGGATGGAAAAGTCAATTTCATGGAAATATTAATGTATATTTCTAAAAAGGTTATAAAAATACAAAATTTGTAAAAAAATATTTAAATTAACACATTAATATTTCATCATTTATAAATAAGGTAAAAATGAATTATATTAATATTATGTCTACAATAATGATATTTTATTGATATTTTTCATATGTTGACATTCTTTTTCCAATACCGGGGAAACGAAATGTCGACAGAAATGTCACTTGATGTTTAATTCCCTGCTACGTATTTAATTCAGAAATACTTATAAAAGTGATTTGGTTTCTTTGGAGAGTGTTAATTTTAACCATGCAATTCCGAACAGCATTCCTAAACTCACTATTAGTCTTGGATCAAGAGAAATTCGAGTGTCAATCGTGAGACAGAGTAGCTCAGTTTTATTTGAGCGAAAATTTGGGAGAGAATTAAATCTAACTTCATGAGTTTTGATTGACGGGAATAGGACAAGGCCATTAAGAGGTTTCTGGTAAGGAACATTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGATCGTAAGTTATTATCTCCACCCTGGCTAGTCTCGTGGTTGCTTGATTTCATGTATCGAAGATGTTTTTGTTCACTGTCTGATATAGATTTTTGTTTTCCGTATAGAATATACTCTCCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCCATTCACTCACATGTTGTGAGAGTTCGTTCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGCTTCATTAGACGCAGG

mRNA sequence

CAGACTTTCAAGCGCAGGAATGGCGGGCGTAACAAGCTCGGCCGTGGACACGTCAAGTTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCCAAGGACAAGGCCATTAAGAGGTTTCTGGTAAGGAACATTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGATCAATATACTCTCCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCCATTCACTCACATGTTGTGAGAGTTCGTTCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGCTTCATTAGACGCAGG

Coding sequence (CDS)

CAGACTTTCAAGCGCAGGAATGGCGGGCGTAACAAGCTCGGCCGTGGACACGTCAAGTTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCCAAGGACAAGGCCATTAAGAGGTTTCTGGTAAGGAACATTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGATCAATATACTCTCCCTAAGCTTTATGCTAAGATGCAGTACTGTGTTTCCTGTGCCATTCACTCACATGTTGTGAGAGTTCGTTCTCGTACTGATAGAAGAAATCGGCAACCACCACAGCGCTTCATTAGACGCAGG

Protein sequence

QTFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR

Homology

[Close]

BLAST of MS020773 vs. NCBI nr
Match: XP_022943123.1 (40S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S ribosomal protein S26-1-like [Cucurbita maxima] >KAG6600881.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031515.1 40S ribosomal protein S26-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.5 bits (537), Expect = 3.6e-51
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 2   TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 106
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 105

[Close]

BLAST of MS020773 vs. NCBI nr
Match: XP_023529394.1 (40S ribosomal protein S26-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.5 bits (537), Expect = 3.6e-51
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 2   TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 106
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 105

[Close]

BLAST of MS020773 vs. NCBI nr
Match: XP_004146441.1 (40S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICTED: 40S ribosomal protein S26-1 [Cucumis melo] >XP_038891817.1 40S ribosomal protein S26-1-like [Benincasa hispida] >KAA0067538.1 hypothetical protein E6C27_scaffold50G00610 [Cucumis melo var. makuwa] >KGN50730.1 hypothetical protein Csa_005888 [Cucumis sativus] >TYK22411.1 hypothetical protein E5676_scaffold530G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 211.5 bits (537), Expect = 3.6e-51
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 2   TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 106
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 105

[Close]

BLAST of MS020773 vs. NCBI nr
Match: XP_022941874.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_023532350.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 210.7 bits (535), Expect = 6.1e-51
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 2   TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 106
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF+RRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRR 105

[Close]

BLAST of MS020773 vs. NCBI nr
Match: KAG6599946.1 (40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030627.1 40S ribosomal protein S26-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 210.7 bits (535), Expect = 6.1e-51
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 2   TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 106
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRF+RRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRR 105

[Close]

BLAST of MS020773 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.9e-45
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 2   TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNK  RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 106
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of MS020773 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 179.5 bits (454), Expect = 2.0e-44
Identity = 84/103 (81.55%), Postives = 95/103 (92.23%), Query Frame = 0


Query: 2   TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNK GRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D 
Sbjct: 2   TFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDG 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRR 105
           Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR+R+PP+RF RR
Sbjct: 62  YVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERFRRR 104

[Close]

BLAST of MS020773 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 178.7 bits (452), Expect = 3.4e-44
Identity = 88/104 (84.62%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 2   TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNK  RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 106
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRK 105

[Close]

BLAST of MS020773 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 178.7 bits (452), Expect = 3.4e-44
Identity = 88/104 (84.62%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 2   TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNK  RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 106
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of MS020773 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.0e-36
Identity = 73/103 (70.87%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 2   TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y Q
Sbjct: 2   TFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQ 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRR 105
           Y LPKLY K+ YC++CAIHS VVR RSR  RR+R PP RF +R
Sbjct: 62  YALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRFGQR 104

[Close]

BLAST of MS020773 vs. ExPASy TrEMBL
Match: A0A5A7VIJ0 (40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold530G00060 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.7e-51
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 2   TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 106
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 105

[Close]

BLAST of MS020773 vs. ExPASy TrEMBL
Match: A0A6J1JIN0 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111484926 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.7e-51
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 2   TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 106
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 105

[Close]

BLAST of MS020773 vs. ExPASy TrEMBL
Match: A0A0A0KM45 (40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.7e-51
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 2   TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 106
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 105

[Close]

BLAST of MS020773 vs. ExPASy TrEMBL
Match: A0A6J1FWD9 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111447947 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.7e-51
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 2   TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 106
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 105

[Close]

BLAST of MS020773 vs. ExPASy TrEMBL
Match: A0A1S3C5M1 (40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.7e-51
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 2   TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNK GRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 106
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 105

[Close]

BLAST of MS020773 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 180.6 bits (457), Expect = 6.3e-46
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 2   TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNK  RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 106
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of MS020773 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 178.7 bits (452), Expect = 2.4e-45
Identity = 88/104 (84.62%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 2   TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNK  RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 106
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of MS020773 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 178.7 bits (452), Expect = 2.4e-45
Identity = 88/104 (84.62%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 2   TFKRRNGGRNKLGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNK  RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRR 106
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRK 105

The following BLAST results are available for this feature:

BLAST of MS020773 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943123.1	3.6e-51	99.04	40S ribosomal protein S26-1-like [Cucurbita moschata] >XP_022987349.1 40S riboso...	[more]
XP_023529394.1	3.6e-51	99.04	40S ribosomal protein S26-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_004146441.1	3.6e-51	99.04	40S ribosomal protein S26-1 [Cucumis sativus] >XP_008456941.1 PREDICTED: 40S rib...	[more]
XP_022941874.1	6.1e-51	98.08	40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_023532350.1 40S riboso...	[more]
KAG6599946.1	6.1e-51	98.08	40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia] >KA...	[more]

BLAST of MS020773 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYK9	8.9e-45	85.58	40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1	[more]
P49216	2.0e-44	81.55	40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2...	[more]
P49206	3.4e-44	84.62	40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2	[more]
Q8LPJ7	3.4e-44	84.62	40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2	[more]
O45499	2.0e-36	70.87	40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1	[more]

BLAST of MS020773 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VIJ0	1.7e-51	99.04	40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1JIN0	1.7e-51	99.04	40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111484926 PE=3 SV=1	[more]
A0A0A0KM45	1.7e-51	99.04	40S ribosomal protein S26 OS=Cucumis sativus OX=3659 GN=Csa_5G220930 PE=3 SV=1	[more]
A0A6J1FWD9	1.7e-51	99.04	40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111447947 PE=3 SV=...	[more]
A0A1S3C5M1	1.7e-51	99.04	40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496738 PE=3 SV=1	[more]

BLAST of MS020773 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56340.1	6.3e-46	85.58	Ribosomal protein S26e family protein	[more]
AT2G40510.1	2.4e-45	84.62	Ribosomal protein S26e family protein	[more]
AT2G40590.1	2.4e-45	84.62	Ribosomal protein S26e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038551	Ribosomal protein S26e superfamily	GENE3D	3.30.1740.20	Ribosomal protein S26e	coord: 1..105 e-value: 3.9E-55 score: 187.2
IPR000892	Ribosomal protein S26e	PFAM	PF01283	Ribosomal_S26e	coord: 2..104 e-value: 5.1E-53 score: 178.1
IPR000892	Ribosomal protein S26e	PANTHER	PTHR12538	40S RIBOSOMAL PROTEIN S26	coord: 2..105
IPR000892	Ribosomal protein S26e	PROSITE	PS00733	RIBOSOMAL_S26E	coord: 73..80
None	No IPR available	PANTHER	PTHR12538:SF16	40S RIBOSOMAL PROTEIN S26	coord: 2..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020773.1	MS020773.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome