MS020750 (gene) Bitter gourd (TR) v1

Overview


Name	MS020750
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	cytochrome c oxidase subunit 3
Location	scaffold487: 158402 .. 158488 (-)
RNA-Seq Expression	MS020750
Synteny	MS020750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTACTTGACCCCTATTCTCCTTTCATCCGGAGCTGCCGTAACTTGGGTTCATCATGCTATACTCGCGGGGAAGGAAAAACGAGCA

mRNA sequence

TTCTACTTGACCCCTATTCTCCTTTCATCCGGAGCTGCCGTAACTTGGGTTCATCATGCTATACTCGCGGGGAAGGAAAAACGAGCA

Coding sequence (CDS)

TTCTACTTGACCCCTATTCTCCTTTCATCCGGAGCTGCCGTAACTTGGGTTCATCATGCTATACTCGCGGGGAAGGAAAAACGAGCA

Protein sequence

FYLTPILLSSGAAVTWVHHAILAGKEKRA

Homology

[Close]

BLAST of MS020750 vs. NCBI nr
Match: YP_009153952.1 (cytochrome c oxidase subunit 3 [Gossypium hirsutum] >YP_009153985.1 cytochrome c oxidase subunit 3 [Gossypium harknessii] >YP_009250110.1 cytochrome c oxidase subunit 3 [Gossypium raimondii] >YP_009388387.1 cytochrome c oxidase subunit 3 [Gossypium thurberi] >YP_009388423.1 cytochrome c oxidase subunit 3 [Gossypium davidsonii] >YP_009388459.1 cytochrome c oxidase subunit 3 [Gossypium trilobum] >YP_009498111.1 Cox3 [Bombax ceiba] >ADP20668.1 cytochrome c oxidase subunit III [Hibiscus cannabinus] >AGA54189.1 cytochrome c oxidase subunit 3 [Gossypium hirsutum] >AGA54223.1 cytochrome c oxidase subunit 3 [Gossypium harknessii] >AMT85385.1 cytochrome c oxidase subunit 3 [Gossypium thurberi] >AMT85421.1 cytochrome c oxidase subunit 3 [Gossypium davidsonii])

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-04
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1   FYLTPILLSSGAAVTWVHHAILAGKEKRA 30
           F  TPILLSSGAAVTW HHAILAGKEKRA
Sbjct: 134 FLNTPILLSSGAAVTWAHHAILAGKEKRA 162

[Close]

BLAST of MS020750 vs. NCBI nr
Match: YP_010035117.1 (cytochrome c oxidase subunit 3 [Euonymus alatus] >QOX10140.1 cytochrome c oxidase subunit 3 [Euonymus alatus])

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-04
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1   FYLTPILLSSGAAVTWVHHAILAGKEKRA 30
           F  TPILLSSGAAVTW HHAILAGKEKRA
Sbjct: 134 FLNTPILLSSGAAVTWAHHAILAGKEKRA 162

[Close]

BLAST of MS020750 vs. NCBI nr
Match: AMC32849.1 (cytochrome c oxidase subunit 3 [Oxalis dillenii])

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-04
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1   FYLTPILLSSGAAVTWVHHAILAGKEKRA 30
           F  TPILLSSGAAVTW HHAILAGKEKRA
Sbjct: 134 FLNTPILLSSGAAVTWAHHAILAGKEKRA 162

[Close]

BLAST of MS020750 vs. NCBI nr
Match: QHE65820.1 (cytochrome c oxidase subunit 3 [Castanospermum australe])

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-04
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1   FYLTPILLSSGAAVTWVHHAILAGKEKRA 30
           F  TPILLSSGAAVTW HHAILAGKEKRA
Sbjct: 134 FLNTPILLSSGAAVTWAHHAILAGKEKRA 162

[Close]

BLAST of MS020750 vs. NCBI nr
Match: AHF22721.1 (cytochrome c oxidase subunit 3, partial [Fragaria mandshurica] >AHF22722.1 cytochrome c oxidase subunit 3, partial [Fragaria vesca subsp. bracteata] >AHF22725.1 cytochrome c oxidase subunit 3, partial [Fragaria vesca subsp. vesca] >AHF22727.1 cytochrome c oxidase subunit 3, partial [Fragaria vesca subsp. bracteata] >AKE33978.1 cytochrome c oxidase subunit 3, partial [Fragaria mandshurica])

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-04
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1   FYLTPILLSSGAAVTWVHHAILAGKEKRA 30
           F  TPILLSSGAAVTW HHAILAGKEKRA
Sbjct: 134 FLNTPILLSSGAAVTWAHHAILAGKEKRA 162

[Close]

BLAST of MS020750 vs. ExPASy Swiss-Prot
Match: P08745 (Cytochrome c oxidase subunit 3 OS=Oenothera berteroana OX=3950 GN=COX3 PE=3 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-07
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1   FYLTPILLSSGAAVTWVHHAILAGKEKRA 30
           F  TPILLSSGAAVTW HHAILAGKEKRA
Sbjct: 134 FLNTPILLSSGAAVTWAHHAILAGKEKRA 162

[Close]

BLAST of MS020750 vs. ExPASy Swiss-Prot
Match: P14853 (Cytochrome c oxidase subunit 3 OS=Glycine max OX=3847 GN=COX3 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-07
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1   FYLTPILLSSGAAVTWVHHAILAGKEKRA 30
           F  TPILLSSGAAVTW HHAILAGKEKRA
Sbjct: 134 FLNTPILLSSGAAVTWAHHAILAGKEKRA 162

[Close]

BLAST of MS020750 vs. ExPASy Swiss-Prot
Match: Q03227 (Cytochrome c oxidase subunit 3 OS=Vicia faba OX=3906 GN=COX3 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-07
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1   FYLTPILLSSGAAVTWVHHAILAGKEKRA 30
           F  TPILLSSGAAVTW HHAILAGKEKRA
Sbjct: 134 FLNTPILLSSGAAVTWAHHAILAGKEKRA 162

[Close]

BLAST of MS020750 vs. ExPASy Swiss-Prot
Match: Q36952 (Cytochrome c oxidase subunit 3 OS=Aegilops columnaris OX=4493 GN=COX3 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.3e-06
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = 0


Query: 4   TPILLSSGAAVTWVHHAILAGKEKRA 30
           TPIL SSGAAVTW HHAILAGKEKRA
Sbjct: 137 TPILPSSGAAVTWAHHAILAGKEKRA 162

[Close]

BLAST of MS020750 vs. ExPASy Swiss-Prot
Match: P32808 (Cytochrome c oxidase subunit 3 OS=Helianthus annuus OX=4232 GN=COX3 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.3e-06
Identity = 25/29 (86.21%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   FYLTPILLSSGAAVTWVHHAILAGKEKRA 30
           F  TPI LSSGAAVTW HHAILAGKEKRA
Sbjct: 134 FLNTPIPLSSGAAVTWAHHAILAGKEKRA 162

[Close]

BLAST of MS020750 vs. ExPASy TrEMBL
Match: A0A0G2QMY0 (Cytochrome c oxidase subunit 3 OS=Gossypium hirsutum OX=3635 GN=cox3 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-04
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1   FYLTPILLSSGAAVTWVHHAILAGKEKRA 30
           F  TPILLSSGAAVTW HHAILAGKEKRA
Sbjct: 134 FLNTPILLSSGAAVTWAHHAILAGKEKRA 162

[Close]

BLAST of MS020750 vs. ExPASy TrEMBL
Match: E9KZN7 (Cytochrome c oxidase subunit 3 OS=Vigna radiata var. radiata OX=3916 GN=cox3 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-04
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1   FYLTPILLSSGAAVTWVHHAILAGKEKRA 30
           F  TPILLSSGAAVTW HHAILAGKEKRA
Sbjct: 134 FLNTPILLSSGAAVTWAHHAILAGKEKRA 162

[Close]

BLAST of MS020750 vs. ExPASy TrEMBL
Match: A0A6B9MI44 (Cytochrome c oxidase subunit 3 (Fragment) OS=Xanthoceras sorbifolium OX=99658 GN=cox3 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-04
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1   FYLTPILLSSGAAVTWVHHAILAGKEKRA 30
           F  TPILLSSGAAVTW HHAILAGKEKRA
Sbjct: 146 FLNTPILLSSGAAVTWAHHAILAGKEKRA 174

[Close]

BLAST of MS020750 vs. ExPASy TrEMBL
Match: A0A6J5XXX7 (Cytochrome c oxidase subunit 3 OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS32342 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-04
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1   FYLTPILLSSGAAVTWVHHAILAGKEKRA 30
           F  TPILLSSGAAVTW HHAILAGKEKRA
Sbjct: 134 FLNTPILLSSGAAVTWAHHAILAGKEKRA 162

[Close]

BLAST of MS020750 vs. ExPASy TrEMBL
Match: A0A385FBE9 (Cytochrome c oxidase subunit 3 OS=Brassica juncea OX=3707 GN=cox3 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-04
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1   FYLTPILLSSGAAVTWVHHAILAGKEKRA 30
           F  TPILLSSGAAVTW HHAILAGKEKRA
Sbjct: 134 FLNTPILLSSGAAVTWAHHAILAGKEKRA 162

[Close]

BLAST of MS020750 vs. TAIR 10
Match: AT2G07687.1 (Cytochrome c oxidase, subunit III )

HSP 1 Score: 51.2 bits (121), Expect = 1.6e-07
Identity = 25/29 (86.21%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   FYLTPILLSSGAAVTWVHHAILAGKEKRA 30
           F  TPIL SSGAAVTW HHAILAGKEKRA
Sbjct: 134 FLNTPILPSSGAAVTWAHHAILAGKEKRA 162

[Close]

BLAST of MS020750 vs. TAIR 10
Match: ATMG00730.1 (cytochrome c oxidase subunit 3 )

HSP 1 Score: 51.2 bits (121), Expect = 1.6e-07
Identity = 25/29 (86.21%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1   FYLTPILLSSGAAVTWVHHAILAGKEKRA 30
           F  TPIL SSGAAVTW HHAILAGKEKRA
Sbjct: 134 FLNTPILPSSGAAVTWAHHAILAGKEKRA 162

The following BLAST results are available for this feature:

BLAST of MS020750 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009153952.1	2.7e-04	89.66	cytochrome c oxidase subunit 3 [Gossypium hirsutum] >YP_009153985.1 cytochrome c...	[more]
YP_010035117.1	2.7e-04	89.66	cytochrome c oxidase subunit 3 [Euonymus alatus] >QOX10140.1 cytochrome c oxidas...	[more]
AMC32849.1	2.7e-04	89.66	cytochrome c oxidase subunit 3 [Oxalis dillenii]	[more]
QHE65820.1	2.7e-04	89.66	cytochrome c oxidase subunit 3 [Castanospermum australe]	[more]
AHF22721.1	2.7e-04	89.66	cytochrome c oxidase subunit 3, partial [Fragaria mandshurica] >AHF22722.1 cytoc...	[more]

BLAST of MS020750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08745	3.5e-07	89.66	Cytochrome c oxidase subunit 3 OS=Oenothera berteroana OX=3950 GN=COX3 PE=3 SV=2	[more]
P14853	3.5e-07	89.66	Cytochrome c oxidase subunit 3 OS=Glycine max OX=3847 GN=COX3 PE=2 SV=1	[more]
Q03227	3.5e-07	89.66	Cytochrome c oxidase subunit 3 OS=Vicia faba OX=3906 GN=COX3 PE=3 SV=1	[more]
Q36952	2.3e-06	92.31	Cytochrome c oxidase subunit 3 OS=Aegilops columnaris OX=4493 GN=COX3 PE=3 SV=1	[more]
P32808	2.3e-06	86.21	Cytochrome c oxidase subunit 3 OS=Helianthus annuus OX=4232 GN=COX3 PE=3 SV=1	[more]

BLAST of MS020750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0G2QMY0	1.3e-04	89.66	Cytochrome c oxidase subunit 3 OS=Gossypium hirsutum OX=3635 GN=cox3 PE=3 SV=1	[more]
E9KZN7	1.3e-04	89.66	Cytochrome c oxidase subunit 3 OS=Vigna radiata var. radiata OX=3916 GN=cox3 PE=...	[more]
A0A6B9MI44	1.3e-04	89.66	Cytochrome c oxidase subunit 3 (Fragment) OS=Xanthoceras sorbifolium OX=99658 GN...	[more]
A0A6J5XXX7	1.3e-04	89.66	Cytochrome c oxidase subunit 3 OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS32342...	[more]
A0A385FBE9	1.3e-04	89.66	Cytochrome c oxidase subunit 3 OS=Brassica juncea OX=3707 GN=cox3 PE=3 SV=1	[more]

BLAST of MS020750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07687.1	1.6e-07	86.21	Cytochrome c oxidase, subunit III	[more]
ATMG00730.1	1.6e-07	86.21	cytochrome c oxidase subunit 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000298	Cytochrome c oxidase subunit III-like	PFAM	PF00510	COX3	coord: 4..28 e-value: 8.1E-6 score: 25.9
IPR035973	Cytochrome c oxidase subunit III-like superfamily	SUPERFAMILY	81452	Cytochrome c oxidase subunit III-like	coord: 2..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020750.1	MS020750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0004129	cytochrome-c oxidase activity
molecular_function	GO:0009055	electron transfer activity