Homology
BLAST of MS020747 vs. NCBI nr
Match:
XP_022146790.1 (RNA-dependent RNA polymerase 1-like [Momordica charantia] >XP_022146791.1 RNA-dependent RNA polymerase 1-like [Momordica charantia] >XP_022146792.1 RNA-dependent RNA polymerase 1-like [Momordica charantia] >XP_022146793.1 RNA-dependent RNA polymerase 1-like [Momordica charantia])
HSP 1 Score: 2231.8 bits (5782), Expect = 0.0e+00
Identity = 1095/1130 (96.90%), Postives = 1100/1130 (97.35%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVIQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQLYGFPTGV+QEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK
Sbjct: 1 MGKTIQLYGFPTGVVQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
Query: 61 LIIFLANGRLYYGSSYLKANEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
LIIFLANGRLYYGSSYLKA EWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL
Sbjct: 61 LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENIWQVQLHKPQGQSDVDYLLIQVHPLTFI 180
NVSVDFGFDRRVLSFFISHSHVDYMLVLRYEN+WQVQLHKPQGQSDVDYLLI
Sbjct: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLI-------- 180
Query: 181 NHTIIIMTCFHYQLFGAPRIYERKSVSFGPILYDPFINFSKEIDTKWFRATDFTPSCCIG 240
QLFGAPRIYER S SFGPIL DPFINFSKEIDTKWFRATDFTPSCCIG
Sbjct: 181 ------------QLFGAPRIYERNSESFGPILDDPFINFSKEIDTKWFRATDFTPSCCIG 240
Query: 241 QSSGLCLEIPYGRQLPNLHDKFAHYFKEIKGRFTLDRGSTYSSNPNLVPIVRPPRNINLP 300
QSSGLCLEIPYGRQLPNLHDKFAHYFKEIKG+FTLDRGSTYSSNPNLVPIVRPPRNI+LP
Sbjct: 241 QSSGLCLEIPYGRQLPNLHDKFAHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPPRNISLP 300
Query: 301 YAILFKINLLVQNGCLPGPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWL 360
YAILFKINLLVQNGCLPGPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWL
Sbjct: 301 YAILFKINLLVQNGCLPGPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWL 360
Query: 361 DDEYRKYFKARNPPQPPIMSLNEGLVYVHRVQVTPCRVYFCGPEVNVSNHVLRDYPEYLD 420
DDEYRKYFKARNPPQPPIMSLNEGLVYVHRVQVTPCRVYFCGPEVNVSN VLR YPEYLD
Sbjct: 361 DDEYRKYFKARNPPQPPIMSLNEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLD 420
Query: 421 NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYS 480
NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYS
Sbjct: 421 NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYS 480
Query: 481 SSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRRE 540
SSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRRE
Sbjct: 481 SSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRRE 540
Query: 541 VEVIPDIEVESDGVKYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVD 600
VEVIPDIEVESDGVKYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVD
Sbjct: 541 VEVIPDIEVESDGVKYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVD 600
Query: 601 PTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKE 660
PTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKE
Sbjct: 601 PTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKE 660
Query: 661 LMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLL 720
LMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLL
Sbjct: 661 LMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLL 720
Query: 721 ELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIAT 780
ELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIAT
Sbjct: 721 ELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIAT 780
Query: 781 GTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFV 840
GTV VAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFV
Sbjct: 781 GTVAVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFV 840
Query: 841 CWDPDLIPPQQVESMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADR 900
CWDPDLIPPQQVE MDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADR
Sbjct: 841 CWDPDLIPPQQVEPMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADR 900
Query: 901 EPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLG 960
EPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLG
Sbjct: 901 EPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLG 960
Query: 961 KLFRMLDEIEPNIDIRSFTRDVARQAYDPDMEVEGFEEYLDNAIYHKGNYDMRLGNLMNY 1020
KLFRMLDEIEP IDIRSFTRDVARQAYDPDMEVEGFEEYLD+AIYHKGNYDMRLGNLMNY
Sbjct: 961 KLFRMLDEIEPKIDIRSFTRDVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNY 1020
Query: 1021 YRIKNEAELISGGSLSRSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVY 1080
YRIKNEAELISGGSLSRSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVY
Sbjct: 1021 YRIKNEAELISGGSLSRSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVY 1080
Query: 1081 ARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVCIKKQKISAR 1131
ARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLV IKKQKISAR
Sbjct: 1081 ARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVRIKKQKISAR 1110
BLAST of MS020747 vs. NCBI nr
Match:
XP_038877934.1 (RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida] >XP_038877936.1 RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida] >XP_038877937.1 RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida] >XP_038877938.1 RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida])
HSP 1 Score: 1911.7 bits (4951), Expect = 0.0e+00
Identity = 936/1134 (82.54%), Postives = 1016/1134 (89.59%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVIQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQL+GFP+GV+QE VK FVER TG GTIDAI TKRS GRG+R+ A IQFT++EGAK
Sbjct: 1 MGKTIQLFGFPSGVLQESVKTFVERFTGKGTIDAINTKRSKGRGRRMYAIIQFTDEEGAK 60
Query: 61 LIIFLANGRLYYGSSYLKANEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
II A L+YG+SYLKA EWK DILP+P VFEYNFKGLRLHLGCQISKESF +L TE
Sbjct: 61 SIISKATEGLFYGTSYLKAREWKHDILPDPPVFEYNFKGLRLHLGCQISKESFSMLWTES 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENIWQVQLHKPQGQSDVDYLLIQVHPLTFI 180
NVSVDFGF++R L FFIS+ HVDYMLVLRYENIWQV+LHKPQGQS VDYLLI
Sbjct: 121 NVSVDFGFEQRKLYFFISYPHVDYMLVLRYENIWQVELHKPQGQS-VDYLLI-------- 180
Query: 181 NHTIIIMTCFHYQLFGAPRIYERKSVSFGPILYDPFINFSKEIDTKWFRATDFTPSCCIG 240
QLFGAPRIYER ++S G I+ DPF+NFS E+DT+WFRATDFTPSCCIG
Sbjct: 181 ------------QLFGAPRIYERDAISLGHIIGDPFLNFSMEVDTQWFRATDFTPSCCIG 240
Query: 241 QSSGLCLEIPYGRQLPNLHDKFAHYFKEIKGRFTLDRGSTYSSNPNLVPIVRPPRNINLP 300
QS+ +CLEIPYGRQLPN HDKFA YFKE G+F+L GSTYSSN NLVP+VRPP INLP
Sbjct: 241 QSAAICLEIPYGRQLPNFHDKFA-YFKEFNGKFSLVSGSTYSSNVNLVPVVRPPLTINLP 300
Query: 301 YAILFKINLLVQNGCLPGPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWL 360
YAILFKINLLVQ GCLPGPALDI+FYQMVDP+ NI FIDHAL KL HLKECCYNPSKWL
Sbjct: 301 YAILFKINLLVQQGCLPGPALDINFYQMVDPRIYNIAFIDHALKKLLHLKECCYNPSKWL 360
Query: 361 DDEYRKYFKARNPPQPPIMSLNEGLVYVHRVQVTPCRVYFCGPEVNVSNHVLRDYPEYLD 420
D+EYRKYFK++NPPQPPI+SL+EGLVYVHRVQVTPC+VYFCGPEVNVSN VLR YP+YLD
Sbjct: 361 DEEYRKYFKSKNPPQPPILSLSEGLVYVHRVQVTPCKVYFCGPEVNVSNRVLRRYPDYLD 420
Query: 421 NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYS 480
NFLRVSFVDEELDK+YSTELSPR SSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYS
Sbjct: 421 NFLRVSFVDEELDKMYSTELSPRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYS 480
Query: 481 SSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRRE 540
SSQLREN+AWMFAP+DG+TAA IR+WMGDF IRNVAKYAARLGQSFGSSTETLSV RRE
Sbjct: 481 SSQLRENAAWMFAPRDGLTAARIRRWMGDFHCIRNVAKYAARLGQSFGSSTETLSVSRRE 540
Query: 541 VEVIPDIEVES-DGVKYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISV 600
V +IPDIEVES GV YVFSDGIGKIS SFA+KVA+KCGIRH PSAFQIRYAGFKGVISV
Sbjct: 541 VNLIPDIEVESGGGVNYVFSDGIGKISVSFAKKVAKKCGIRHMPSAFQIRYAGFKGVISV 600
Query: 601 DPTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQK 660
DPTSSVKLSLRNSMLKYESTDTKLDVL WSK PC+LNRQLITLLSTLGV+DHVFE KQ+
Sbjct: 601 DPTSSVKLSLRNSMLKYESTDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQR 660
Query: 661 ELMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKL 720
EL+D+LDTIF+D MKAQ+ALELMSPGE T +LKEM+ CGYRPDSEPFL MML TFR+SKL
Sbjct: 661 ELIDELDTIFSDPMKAQRALELMSPGENTKILKEMMLCGYRPDSEPFLWMMLHTFRESKL 720
Query: 721 LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIA 780
LELRRKSRIFIPNGRAM+GCLDET NLEYGEVFVQC+AHQQL+DDHIIFKR KSNRHFI
Sbjct: 721 LELRRKSRIFIPNGRAMLGCLDETRNLEYGEVFVQCSAHQQLRDDHIIFKRRKSNRHFIV 780
Query: 781 TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYF 840
TGTVVVAKNPCLHPGDVRVLTAVDVP+LHHMVDCVVFPQKG RPHPNECSGSDLDGDIYF
Sbjct: 781 TGTVVVAKNPCLHPGDVRVLTAVDVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYF 840
Query: 841 VCWDPDLIPPQQVESMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD 900
VCWDPDLIPP QVE MDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD
Sbjct: 841 VCWDPDLIPPLQVEPMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD 900
Query: 901 REPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVL 960
+EP+KAMS PCIELAKLFSIAVDFPKTG+PALIPANLRV+EYPDFMDKADKVTY+S+NVL
Sbjct: 901 KEPEKAMSNPCIELAKLFSIAVDFPKTGIPALIPANLRVQEYPDFMDKADKVTYESKNVL 960
Query: 961 GKLFRMLDEIEPNI-DIRSF--TRDVARQAYDPDMEVEGFEEYLDNAIYHKGNYDMRLGN 1020
GKLFRMLD I PNI +IRSF T DVAR+AYDPDMEVEGFEEYLD+AIYHK NYDMRLGN
Sbjct: 961 GKLFRMLDNIGPNIKNIRSFAYTPDVAREAYDPDMEVEGFEEYLDDAIYHKNNYDMRLGN 1020
Query: 1021 LMNYYRIKNEAELISGGSLSRSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHG 1080
LM+YY+IK EAELISGGSL+ SLS TKKNEAESI AV+SLRKEAR WFNENA+LH+ H
Sbjct: 1021 LMHYYKIKTEAELISGGSLTSSLSFTKKNEAESITMAVKSLRKEARGWFNENADLHYGHD 1080
Query: 1081 NNVYARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVCIKKQKISAR 1131
NVYARASAWYFVTYHH+YWGW D K+HGH +SFPWC+YDKL+ IK +K ++R
Sbjct: 1081 TNVYARASAWYFVTYHHTYWGWSDGRKNHGHFLSFPWCIYDKLIRIKNRKTNSR 1112
BLAST of MS020747 vs. NCBI nr
Match:
XP_023539816.1 (RNA-dependent RNA polymerase 1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 1884.8 bits (4881), Expect = 0.0e+00
Identity = 932/1133 (82.26%), Postives = 1002/1133 (88.44%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVIQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQLYGFP+GV+QE VK FVER TG G+IDAI KRS GRGKR+ A IQF +D GAK
Sbjct: 1 MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
Query: 61 LIIFLANGRLYYGSSYLKANEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
LII LAN L YG+SYLKA EWKQDIL +PLVFEYNFKGL LHLGCQIS+E FFVL E
Sbjct: 61 LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENIWQVQLHKPQGQSDVDYLLIQVHPLTFI 180
NVSV+F F+RR L FFISHSH DYMLVLRYENIWQV+LHKP GQS +DYLLI
Sbjct: 121 NVSVNFEFERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQS-IDYLLI-------- 180
Query: 181 NHTIIIMTCFHYQLFGAPRIYERKSVSFGPILYDPFINFSKEIDTKWFRATDFTPSCCIG 240
QL GAPRIYER + FG I DPF++FSKE+DT+WFRATDFTPSCCIG
Sbjct: 181 ------------QLVGAPRIYERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIG 240
Query: 241 QSSGLCLEIPYGRQLPNLHDKFAHYFKEIKGRFTLDRGSTYSSNPNLVPIVRPPRNINLP 300
QS LCLEIPYGR LPN HDKFA YFKEIKG+FTL GSTYSSN NLVP+VRPP +I+LP
Sbjct: 241 QSGALCLEIPYGRLLPNFHDKFA-YFKEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLP 300
Query: 301 YAILFKINLLVQNGCLPGPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWL 360
YAILFKINLLVQ GCLPGPALDISFY+MVDPQ +NI FID AL KLY LKECCYNPSKWL
Sbjct: 301 YAILFKINLLVQQGCLPGPALDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWL 360
Query: 361 DDEYRKYFKARNPPQPPIMSLNEGLVYVHRVQVTPCRVYFCGPEVNVSNHVLRDYPEYLD 420
+EYRKY K NPPQPP +SL+EGLVYVHRVQVTPCRVYFCGPEVNVSN VLR YPEYLD
Sbjct: 361 GEEYRKYSKLTNPPQPPNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLD 420
Query: 421 NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYS 480
NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYS
Sbjct: 421 NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYS 480
Query: 481 SSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRRE 540
SSQLREN+ WMFAP+DGITAA IRKWMGDF SIRNVAKYAARLGQSFGSSTET SV RRE
Sbjct: 481 SSQLRENAVWMFAPRDGITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRRE 540
Query: 541 VEVIPDIEVESD-GVKYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISV 600
VEVIPDIEV+SD G+ YVFSDGIGKISASFAR+VA+KC IRHTPSAFQIRYAGFKGVISV
Sbjct: 541 VEVIPDIEVKSDAGINYVFSDGIGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISV 600
Query: 601 DPTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQK 660
DPTS VKLSLRNSMLKYESTDTKLDVL WS+ PCYLNRQLITLLSTLGV+D +FE KQK
Sbjct: 601 DPTSFVKLSLRNSMLKYESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQK 660
Query: 661 ELMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKL 720
EL+DQLDTIF D +KAQQALELMSPGE TN+LKE+ISCGYRPDSEPFLSMML TFR+SKL
Sbjct: 661 ELIDQLDTIFMDPLKAQQALELMSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKL 720
Query: 721 LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIA 780
LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQC+AHQQL +DHIIFKR KSN+HFI
Sbjct: 721 LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIV 780
Query: 781 TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYF 840
TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDC+VFPQKGPRPHPNECSGSDLDGDIYF
Sbjct: 781 TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYF 840
Query: 841 VCWDPDLIPPQQVESMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD 900
VCWDPDLIPPQQVE MDYTPV S+LLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD
Sbjct: 841 VCWDPDLIPPQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD 900
Query: 901 REPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVL 960
P+KAMS+PCI+LAKLFSIAVDFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVL
Sbjct: 901 SRPEKAMSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVL 960
Query: 961 GKLFRMLDEIEPNIDIRS--FTRDVARQAYDPDMEVEGFEEYLDNAIYHKGNYDMRLGNL 1020
GKLFRMLD+IEP I I+S FTR++ARQAYDPDMEV+GFEEYLD+A+YHK NYDMRLGNL
Sbjct: 961 GKLFRMLDDIEPRISIKSVKFTREIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNL 1020
Query: 1021 MNYYRIKNEAELISGGSLSRSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGN 1080
M YY+IK EAELISG SL++S S TKKNEAESI AV+SLRKEAR WFNENA LHF H N
Sbjct: 1021 MKYYKIKTEAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDN 1080
Query: 1081 NVYARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVCIKKQKISAR 1131
N YARASAWYFVTYH+SYWGW+ E K+ H +SFPWCVYDKL+ IKK+KI AR
Sbjct: 1081 NAYARASAWYFVTYHYSYWGWYGE-KNESHFLSFPWCVYDKLIRIKKRKIGAR 1110
BLAST of MS020747 vs. NCBI nr
Match:
KAG6599932.1 (RNA-dependent RNA polymerase 1, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 1884.0 bits (4879), Expect = 0.0e+00
Identity = 932/1133 (82.26%), Postives = 1002/1133 (88.44%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVIQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQLYGFP+GV+QE VK FVER TG G+IDAI KRS GRGKR+ A IQF +D GAK
Sbjct: 1 MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
Query: 61 LIIFLANGRLYYGSSYLKANEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
LII LAN L YG+SYLKA EWKQDIL +PLVFEYNFKGL LHLGCQIS+E FFVL E
Sbjct: 61 LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENIWQVQLHKPQGQSDVDYLLIQVHPLTFI 180
NVSV+F F+RR L FFISH VDYMLVLRYENIWQV+LHKPQGQS +DYLLI
Sbjct: 121 NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQS-IDYLLI-------- 180
Query: 181 NHTIIIMTCFHYQLFGAPRIYERKSVSFGPILYDPFINFSKEIDTKWFRATDFTPSCCIG 240
QL GAPRIYER + FG I DPF++FSKE+DTKWFRATDFTPSCCIG
Sbjct: 181 ------------QLVGAPRIYERDTKLFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIG 240
Query: 241 QSSGLCLEIPYGRQLPNLHDKFAHYFKEIKGRFTLDRGSTYSSNPNLVPIVRPPRNINLP 300
QS LCLEIPYGR LPN HDKFA YFKEIKG+FTL GSTYSSN NLVP+VRPP +I+LP
Sbjct: 241 QSGALCLEIPYGRLLPNFHDKFA-YFKEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLP 300
Query: 301 YAILFKINLLVQNGCLPGPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWL 360
YAILFKINLLVQ GCLPGP+LDISFY+MVDPQ +NI FID AL KLY LKECCYNPSKWL
Sbjct: 301 YAILFKINLLVQQGCLPGPSLDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWL 360
Query: 361 DDEYRKYFKARNPPQPPIMSLNEGLVYVHRVQVTPCRVYFCGPEVNVSNHVLRDYPEYLD 420
+EYRKY K RNPPQPP +SL+EGLVYVHRVQVTPCRVYFCGPEVNVSN VLR YPEYLD
Sbjct: 361 GEEYRKYSKLRNPPQPPNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLD 420
Query: 421 NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYS 480
NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYS
Sbjct: 421 NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYS 480
Query: 481 SSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRRE 540
SSQLREN+ WMFAP++GITAA IRKWMGDF SIRNVAKYAARLGQSFGSSTET SV RRE
Sbjct: 481 SSQLRENAVWMFAPRNGITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRRE 540
Query: 541 VEVIPDIEVESD-GVKYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISV 600
VEVIPDIEV+SD G+ YVFSDGIGKISASFAR+VA+KC IRHTPSAFQIRYAGFKGVISV
Sbjct: 541 VEVIPDIEVKSDAGINYVFSDGIGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISV 600
Query: 601 DPTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQK 660
DPTS VKLSLRNSMLKYESTDTKLDVL WS+ PCYLNRQLITLLSTLGV+D +FE KQK
Sbjct: 601 DPTSFVKLSLRNSMLKYESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQK 660
Query: 661 ELMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKL 720
EL+DQLDTIF D +KAQQALELMSPGE TN+LKE+ISCGYRPDSEPFL MML TFR+SKL
Sbjct: 661 ELIDQLDTIFMDPLKAQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLYTFRESKL 720
Query: 721 LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIA 780
LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQC+AHQQL +DHIIFKR KSN+HFI
Sbjct: 721 LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIV 780
Query: 781 TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYF 840
TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDC+VFPQKGPRPHPNECSGSDLDGDIYF
Sbjct: 781 TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYF 840
Query: 841 VCWDPDLIPPQQVESMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD 900
VCWDPDLIPPQQVE MDYTPV S+LLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD
Sbjct: 841 VCWDPDLIPPQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD 900
Query: 901 REPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVL 960
P+KAMS+PCI+LAKLFSIAVDFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVL
Sbjct: 901 SRPEKAMSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVL 960
Query: 961 GKLFRMLDEIEPNIDIRS--FTRDVARQAYDPDMEVEGFEEYLDNAIYHKGNYDMRLGNL 1020
GKLFRMLD+IEP I I+S FTR++ARQAYDPDMEVEGFEEYLD+A+YHK NYDMRLGNL
Sbjct: 961 GKLFRMLDDIEPRISIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNL 1020
Query: 1021 MNYYRIKNEAELISGGSLSRSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGN 1080
M YY+IK EAELISG SL++S S TKKNEAESI AV+SLRKEAR WFNENA LHF H N
Sbjct: 1021 MKYYKIKTEAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDN 1080
Query: 1081 NVYARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVCIKKQKISAR 1131
N YARASAWYFVTYH+SYWGW+ E K+ H +SFPWCVYDKL+ IKK+KI AR
Sbjct: 1081 NAYARASAWYFVTYHYSYWGWYGE-KNESHFLSFPWCVYDKLIRIKKRKIGAR 1110
BLAST of MS020747 vs. NCBI nr
Match:
XP_022943176.1 (RNA-dependent RNA polymerase 1-like [Cucurbita moschata])
HSP 1 Score: 1881.7 bits (4873), Expect = 0.0e+00
Identity = 930/1133 (82.08%), Postives = 1001/1133 (88.35%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVIQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQLYGFP+GV+QE VK FVER TG G+IDAI KRS GRGKR+ A IQF +D GAK
Sbjct: 1 MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
Query: 61 LIIFLANGRLYYGSSYLKANEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
LII LAN L YG+SYLKA EWKQDIL +PLVFEYNFKGL LHLGCQIS+E FFVL E
Sbjct: 61 LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENIWQVQLHKPQGQSDVDYLLIQVHPLTFI 180
NVSV+F F+RR L FFISH VDYMLVLRYENIWQV+LHKPQGQS +DYLLI
Sbjct: 121 NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQS-IDYLLI-------- 180
Query: 181 NHTIIIMTCFHYQLFGAPRIYERKSVSFGPILYDPFINFSKEIDTKWFRATDFTPSCCIG 240
QL GAPRIYER + FG I DPF++FSKE+DTKWFRATDFTPSCCIG
Sbjct: 181 ------------QLVGAPRIYERDTKLFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIG 240
Query: 241 QSSGLCLEIPYGRQLPNLHDKFAHYFKEIKGRFTLDRGSTYSSNPNLVPIVRPPRNINLP 300
QS LCLEIPYGR LPN HDKFA YF EIKG+FTL GSTYSSN NLVP+VRPP +I+LP
Sbjct: 241 QSGALCLEIPYGRLLPNFHDKFA-YFNEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLP 300
Query: 301 YAILFKINLLVQNGCLPGPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWL 360
YAILFKINLLVQ GCLPGP+LDISFY+MVDPQ +NI FID AL KLY LKECCYNPSKWL
Sbjct: 301 YAILFKINLLVQQGCLPGPSLDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWL 360
Query: 361 DDEYRKYFKARNPPQPPIMSLNEGLVYVHRVQVTPCRVYFCGPEVNVSNHVLRDYPEYLD 420
+EYRKY K NPPQPP +SL+EGLVYVHRVQVTPCRVYFCGPEVNVSN VLR YPEYLD
Sbjct: 361 GEEYRKYSKLTNPPQPPNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLD 420
Query: 421 NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYS 480
NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYS
Sbjct: 421 NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYS 480
Query: 481 SSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRRE 540
SSQLREN+ WMFAP+DGITAA IRKWMGDF SIRNVAKYAARLGQSFGSSTET SV RRE
Sbjct: 481 SSQLRENAVWMFAPRDGITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRRE 540
Query: 541 VEVIPDIEVESD-GVKYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISV 600
V+VIPDIEV+SD G+ YVFSDGIGKISASFAR+VA+KC IRHTPSAFQIRYAGFKGVISV
Sbjct: 541 VKVIPDIEVKSDAGINYVFSDGIGKISASFAREVARKCHIRHTPSAFQIRYAGFKGVISV 600
Query: 601 DPTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQK 660
DPTS VKLSLRNSMLKYESTDTKLDVL WS+ PCYLNRQLITLLSTLGV+D +FE KQK
Sbjct: 601 DPTSFVKLSLRNSMLKYESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQK 660
Query: 661 ELMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKL 720
EL+DQLDTIF D +KAQQALELMSPGE TN+LKE+ISCGYRPDSEPFL MML TFR+SKL
Sbjct: 661 ELIDQLDTIFMDPLKAQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKL 720
Query: 721 LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIA 780
LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQC+AHQQL +DHIIFKR KSN+HFI
Sbjct: 721 LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIV 780
Query: 781 TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYF 840
TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDC+VFPQKGPRPHPNECSGSDLDGDIYF
Sbjct: 781 TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYF 840
Query: 841 VCWDPDLIPPQQVESMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD 900
VCWDPDLIPPQQVE MDYTPVPS+LLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD
Sbjct: 841 VCWDPDLIPPQQVEPMDYTPVPSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD 900
Query: 901 REPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVL 960
P+KAMS+PCI+LAKLFSIAVDFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVL
Sbjct: 901 SRPEKAMSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVL 960
Query: 961 GKLFRMLDEIEPNIDIRS--FTRDVARQAYDPDMEVEGFEEYLDNAIYHKGNYDMRLGNL 1020
GKLFRMLD+IEP I I+S FTR++ARQAYDPDMEV+GFEEYLD+A+YHK NYDMRLGNL
Sbjct: 961 GKLFRMLDDIEPRISIKSVKFTREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNL 1020
Query: 1021 MNYYRIKNEAELISGGSLSRSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGN 1080
M YY+IK EAELISG SL++S S TKKNEAESI AV+SLRKEAR WFNENA LHF H N
Sbjct: 1021 MKYYKIKTEAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDN 1080
Query: 1081 NVYARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVCIKKQKISAR 1131
N YARASAWYFVTYH+SYWGW+ E K+ H +SFPWCVYDKL+ IKK+KI AR
Sbjct: 1081 NAYARASAWYFVTYHYSYWGWYGE-KNESHFLSFPWCVYDKLIRIKKRKIGAR 1110
BLAST of MS020747 vs. ExPASy Swiss-Prot
Match:
Q9LQV2 (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1)
HSP 1 Score: 1347.4 bits (3486), Expect = 0.0e+00
Identity = 684/1133 (60.37%), Postives = 832/1133 (73.43%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVIQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQ++GFP GV EEVK+F+ER+TGSGT+ AIK ++ G RV A +QFT++ +
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 61 LIIFLANGRLYYGSSYLKANEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
LII A RLYYG SYLKA E +QDI+P P + GL++ GCQ+S + F L +
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENIWQVQLHKPQGQSDVDYLLIQVHPLTFI 180
+V V FG R L F S DY L L YENIWQ+ LH PQG+S +L+IQV
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSS-KFLVIQV------ 180
Query: 181 NHTIIIMTCFHYQLFGAPRIYERKSVSFGPILYDPFINFSKEIDTKWFRATDFTPSCCIG 240
GAP+I+E++ +L+ +S D +W R TDFT S CIG
Sbjct: 181 --------------IGAPKIFEKEDQPIN-LLFGIMDFYSDGSDEQWIRTTDFTSSSCIG 240
Query: 241 QSSGLCLEIPYGRQLPNLHDKFAHYFKEIKGRFTLDRGSTYSSNPN-LVPIVRPPRNINL 300
QS+ CLE+P +P+ + FA+Y + F ++ GS+YSSN N LVP+V PP +L
Sbjct: 241 QSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSL 300
Query: 301 PYAILFKINLLVQNGCLPGPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKW 360
P+ ILFK+N LVQN CL GPALD+ FY++++ ++ + IDH L KL+HL ECCY P+ W
Sbjct: 301 PFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHW 360
Query: 361 LDDEYRKYFKARNPPQPPIMSLNEGLVYVHRVQVTPCRVYFCGPEVNVSNHVLRDYPEYL 420
L DEY+K+ P P +SL++GLVY++RVQVTP RVYF GPEVNVSN VLR Y +Y+
Sbjct: 361 LRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYI 420
Query: 421 DNFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAY 480
+NFLRVSFVDE+L+K+ S +LSPR S+ +TK++ RI SVLRDGI IGDKKFEFLA+
Sbjct: 421 NNFLRVSFVDEDLEKVRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAF 480
Query: 481 SSSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRR 540
SSSQLRENSAWMFAP D ITAA IR WMGDF IRNVAKYAARLGQSF SS ETL+V
Sbjct: 481 SSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSD 540
Query: 541 EVEVIPDIEVESDGVKYVFSDGIGKISASFARKVAQKCGI-RHTPSAFQIRYAGFKGVIS 600
E+EVIPD+E+ S G +YVFSDGIGKISA FARKVA+KCG+ +PSAFQIRY G+KGV++
Sbjct: 541 EIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVA 600
Query: 601 VDPTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQ 660
VDP SS KLSLR SM K+ES +TKLDVL WSK PCY+NRQLITLLSTLGV D VFEKKQ
Sbjct: 601 VDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQ 660
Query: 661 KELMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSK 720
+E++D+LD I T ++A +AL LM+PGE TN+LK +I CGY+PD+EPFLSMML FR SK
Sbjct: 661 REVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASK 720
Query: 721 LLELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFI 780
LLELR K+RIFI GR+MMGCLDET LEYG+V VQ + + R FI
Sbjct: 721 LLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPM------------RPGRRFI 780
Query: 781 ATGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIY 840
TG VVVAKNPCLHPGDVRVL AV+VP+L+HMVDCVVFPQKG RPHPNECSGSDLDGDIY
Sbjct: 781 ITGPVVVAKNPCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIY 840
Query: 841 FVCWDPDLIPPQQVESMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFA 900
FVCWD +L+PP+ E MDYTP P+++LDHDVT+EEV+EYFANY+VNDSLGIIANAHTAFA
Sbjct: 841 FVCWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFA 900
Query: 901 DREPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENV 960
D+EP KA S PCIELAK FS AVDFPKTGV A+IP +L V+EYPDFM+K DK TY+S+NV
Sbjct: 901 DKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNV 960
Query: 961 LGKLFRMLDE-IEPNIDIRSFTRDVARQAYDPDMEVEGFEEYLDNAIYHKGNYDMRLGNL 1020
+GKLFR + E P I I+SFT DVA ++YD DMEV+GFEEY+D A Y K NYD +LGNL
Sbjct: 961 IGKLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNL 1020
Query: 1021 MNYYRIKNEAELISGGSLSRSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGN 1080
M+YY IK EAE++SGG + S S TK+ +AESI AVR+LRKE S FN + E
Sbjct: 1021 MDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEE-----EE 1080
Query: 1081 NVYARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVCIKKQKISAR 1131
N A+ASAWY VTYH SYWG ++EG + H +SF WCVYDKLV IKK + R
Sbjct: 1081 NESAKASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRR 1091
BLAST of MS020747 vs. ExPASy Swiss-Prot
Match:
Q0DXS3 (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2)
HSP 1 Score: 912.5 bits (2357), Expect = 4.6e-264
Identity = 455/731 (62.24%), Postives = 574/731 (78.52%), Query Frame = 0
Query: 398 VYFCGPEVNVSNHVLRDYPEYLDNFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFK 457
VYF GPE+NVSN V+R++ ++NFLR+SFVDE+ +KL +T+LSPR +S + +T ++K
Sbjct: 9 VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68
Query: 458 RILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVA 517
R+LSVL DGITIG K FEFLA+SSSQLR+NSAWMFA + G+ A+ IR WMGDFR+IRNVA
Sbjct: 69 RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128
Query: 518 KYAARLGQSFGSSTETLSVGRREVEVIPDIEVESDGVKYVFSDGIGKISASFARKVAQKC 577
KYAARLGQSF SSTETL V + EVE I DI+ +G ++VFSDGIGKIS++FA +VA KC
Sbjct: 129 KYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAMKC 188
Query: 578 GI-RHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYL 637
+ R PSAFQIRY G+KGV++VDPTS KLSLR SMLK++S + +DVL +SK P +L
Sbjct: 189 NLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFL 248
Query: 638 NRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMIS 697
NRQLITLLSTLGV D VFE+KQ+E ++QL+ + TD A +A+ELM GEITN +KE++
Sbjct: 249 NRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLL 308
Query: 698 CGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCT 757
CGY+PD EP+LSM+L TFR SKLLEL+ KSRI IP GRAMMGCLDET L+YG+VF++ T
Sbjct: 309 CGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRAT 368
Query: 758 AHQQLQDDHIIFKRGKSNRHFIATGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVF 817
+ N F TG VV+AKNPCLHPGD+R+L AVDVP LHHM +CVVF
Sbjct: 369 SGV------------NDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVF 428
Query: 818 PQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVESMDYTPVPSKLLDHDVTMEEVQE 877
PQ+GPRPHPNECSGSDLDGDIYFV WDP LIPP+ V MDYTP P++ LDHDVT+EEV+E
Sbjct: 429 PQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEE 488
Query: 878 YFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANL 937
YF NY+VN+SLG+IANAH FAD+E KA S PCIELAKLFSIAVDFPKTGVPALIP L
Sbjct: 489 YFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPEL 548
Query: 938 RVEEYPDFMDKADKVTYQSENVLGKLFRMLDEIEPNIDIRSFTRDVARQAYDPDMEVEGF 997
V+EYPDFM+K DKVTY+S+ V+GKL+R + + P+ I+ FTR+VAR++YD DM V+G+
Sbjct: 549 HVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPH--IKHFTREVARRSYDTDMIVDGY 608
Query: 998 EEYLDNAIYHKGNYDMRLGNLMNYYRIKNEAELISGGSLSRSLSATKKNEAESIATAVRS 1057
E+Y+ A+ K YD +LGNLM++Y IK+EAE+ISG L + + TKK++A++I AVRS
Sbjct: 609 EDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRS 668
Query: 1058 LRKEARSWFNENAELHFRHGNNV-YARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCV 1117
LRKEARS F+E + HG++ A+ASAWY VTYH +WG ++EG + H ISFPWC+
Sbjct: 669 LRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPWCI 722
Query: 1118 YDKLVCIKKQK 1127
Y+KL+ IK+++
Sbjct: 729 YEKLLRIKQRR 722
BLAST of MS020747 vs. ExPASy Swiss-Prot
Match:
O82504 (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1)
HSP 1 Score: 737.3 bits (1902), Expect = 2.7e-211
Identity = 429/1142 (37.57%), Postives = 652/1142 (57.09%), Query Frame = 0
Query: 4 TIQLYGFPTGVIQEEVKEFVERITGSGTIDA--IKTKRSNGRGKRVCATIQFTNDE-GAK 63
T+++ P ++ +E+ F+E G T+ A I T R N + R A +QFT E ++
Sbjct: 11 TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWK-PRDFARVQFTTLEVKSR 70
Query: 64 LIIFLANGRLYYGSSYLKANEWKQDILPNPLVFEYNFKGLRLHLGCQISKES-FFVLQTE 123
+ + +L + + L+ +E DI+P P+ + L +G S E F L+
Sbjct: 71 AQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKW 130
Query: 124 LNVSVDFGFDRRVLSFFISHSHVDYMLVLRYENIWQVQLHKPQGQ-SDVDYLLIQVHPLT 183
V ++R + F++ S Y + +R+E+I + G S++D L+
Sbjct: 131 DGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLL------ 190
Query: 184 FINHTIIIMTCFHYQLFGAPRIYERKSVSFGPILYDPFINFSKE-IDTKWFRATDFTPSC 243
+L P++++R +V F KE D W R TDF+ S
Sbjct: 191 --------------KLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSK 250
Query: 244 CIGQSSGLCLEIPYGRQLPNLHDKFAHYFKEIKGRFTLDRGSTYSSNPNLVPIVRPP-RN 303
IG S+ CLE+ G + ++ Y++E T G T++S +VP++
Sbjct: 251 SIGTSTCFCLEVHNGSTMLDIFSGLP-YYREDTLSLTYVDGKTFASAAQIVPLLNAAILG 310
Query: 304 INLPYAILFKINLLVQNGCLP-GPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYN 363
+ PY ILF++N LV + A D+ +++ + L KL+ CY+
Sbjct: 311 LEFPYEILFQLNALVHAQKISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYD 370
Query: 364 PSKWLDDEYRKYF-KARNPPQPPIMSLNE-GLVYVHRVQVTPCRVYFCGPEVNVSNHVLR 423
P ++ + + K ++ P L E ++ R VTP ++Y GPE+ +N+V++
Sbjct: 371 PVFFVKTQMQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVK 430
Query: 424 DYPEYLDNFLRVSFVDEELDKLYSTELS--PRESSSLEDGKTKIFKRILSVLRDGITIGD 483
++ E++ +F+RV+FV+E+ KL + LS +E ++ +T I+ R+LS+L +GIT+G
Sbjct: 431 NFAEHVSDFMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGP 490
Query: 484 KKFEFLAYSSSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSST 543
K+FEFLA+S+SQLR NS WMFA + + A IR+WMG FR IR+++K AAR+GQ F +S
Sbjct: 491 KRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASR 550
Query: 544 ETLSVGRREVEVIPDIEVESDGVKYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYA 603
+TL V ++VE IPDIEV +DG Y FSDGIGKIS +FA++VAQKCG+ H PSAFQIRY
Sbjct: 551 QTLIVRAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYG 610
Query: 604 GFKGVISVDPTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVED 663
G+KGVI+VD +S KLSLR+SMLK++S + L+V W++S+PC+LNR++I LLSTLG+ED
Sbjct: 611 GYKGVIAVDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIED 670
Query: 664 HVFEKKQKELMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMML 723
+FE Q + L + D A L+ +S N+L +M+ GY P SEP+LSMML
Sbjct: 671 AMFEAMQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMML 730
Query: 724 LTFRQSKLLELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCT-AHQQLQDDHIIFKR 783
+S+L EL+ + RI +P GR ++GC+DE G LEYG+V+V+ T +L+ + R
Sbjct: 731 RVHHESQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFR 790
Query: 784 GKSNRHFIATGTVVVAKNPCLHPGDVRVLTAVDVPSLHH--MVDCVVFPQKGPRPHPNEC 843
+ G VVV KNPCLHPGD+RVL A+ +DC++FPQKG RPHPNEC
Sbjct: 791 KIDEETSVVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNEC 850
Query: 844 SGSDLDGDIYFVCWDPDLIPPQQVESMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLG 903
SG DLDGD +FV WD +IP + MDY +L+DHDVT+EE+ ++F +YM++D+LG
Sbjct: 851 SGGDLDGDQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLG 910
Query: 904 IIANAHTAFADREPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKA 963
+I+ AH ADR+P+KA S+ C+ELA L S AVDF KTG PA +P L+ E+PDF+++
Sbjct: 911 VISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERF 970
Query: 964 DKVTYQSENVLGKLFRMLDEIEPNIDIRSFTRDVARQAYDPDMEVEGFEEYLDNAIYHKG 1023
+K TY SE+V GKL+R + + + D AYD +E GFE +++ A H+
Sbjct: 971 EKPTYISESVFGKLYRAVKSSLAQRKPEAESEDTV--AYDVTLEEAGFESFIETAKAHRD 1030
Query: 1024 NYDMRLGNLMNYYRIKNEAELISGGSLSRSLSATKKNE-----AESIATAVRSLRKEARS 1083
Y +L +LM YY NE E+++G ++ + + N + I +V+ L KEA
Sbjct: 1031 MYGEKLTSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMG 1090
Query: 1084 WFNENAELHFRHGNNVYARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVCIK 1126
WF ++ E ASAWY+VTY+ ++ + +SFPW V D L+ IK
Sbjct: 1091 WFEKSCE----DEQQKKKLASAWYYVTYNPNH------RDEKLTFLSFPWIVGDVLLDIK 1116
BLAST of MS020747 vs. ExPASy Swiss-Prot
Match:
Q7XM31 (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1)
HSP 1 Score: 721.5 bits (1861), Expect = 1.5e-206
Identity = 428/1141 (37.51%), Postives = 635/1141 (55.65%), Query Frame = 0
Query: 11 PTGVIQEEVKEFVERITGSGTIDAIKTKRSN-GRGKRVCATIQFTNDEGAKLIIFLA-NG 70
P+ V E + F + +G A + ++ G R T+QF + A LA +G
Sbjct: 19 PSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSAAAAAAAAGLASSG 78
Query: 71 RL-YYGSSYLKANEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTELNVSVDFG 130
RL + + L + D+LP G L +G ++++ F V +
Sbjct: 79 RLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADAWDGVRAEVI 138
Query: 131 FDRRVLSFFISHSHVDYMLVLRYENIWQVQLHKPQGQSDVDYLLIQVHPLTFINHTIIIM 190
+R + ++ H Y L + +E++ + T+ M
Sbjct: 139 PGKRRVDLYLEHDSQRYKLEVLFEDMKDC-----------------------LGCTLDGM 198
Query: 191 TCFHYQLFGAPRIYERKSVSFGP-----ILYDPFINFSKEIDTKWFRATDFTPSCCIGQS 250
QL APRI+ S GP + D F ++ W RA DFTP+ G+
Sbjct: 199 GAILLQLNYAPRIHTAIS---GPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRC 258
Query: 251 SGLCLEIPYGRQLPNLHDKFAHYFKEIKGRFTLDRGSTYSSNPNLVPIVRPPRNINLPYA 310
S L L++ + ++ F G T++ ++ N+VP+V PR+ ++PY
Sbjct: 259 STLVLKLGKSALVSDILKSLP--FSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYE 318
Query: 311 ILFKINLLVQNGCLPGPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDD 370
+LF++N L+ G + ++ ++ + Q + K++ L+ CY P +++
Sbjct: 319 VLFRLNSLMHMGKIVAKHVNADLFKAL--QELPVDVSRRIFEKMHKLESTCYGPLQFIQQ 378
Query: 371 EYRKYFKARNPPQPPIMSLNEG-------LVYVHRVQVTPCRVYFCGPEVNVSNHVLRDY 430
E ++ N ++ NEG L+ +RV +TP +++ GPE V+N+V++ +
Sbjct: 379 EAYSMKRSHN-----VLLSNEGEGEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHH 438
Query: 431 PEYLDNFLRVSFVDEELDKLYSTELSPRESSSL--EDGKTKIFKRILSVLRDGITIGDKK 490
Y +F+RV+FVDE+ KL S +S R + KT ++ RILS+L+ G +IG K
Sbjct: 439 SAYASDFVRVTFVDEDWSKLSSNAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKN 498
Query: 491 FEFLAYSSSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTET 550
FEFLA+S+SQLR NS WMFA + A GIR+WMG F +IR+V+K AAR+GQ F SS +T
Sbjct: 499 FEFLAFSASQLRGNSVWMFASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQT 558
Query: 551 LSVGRREVEVIPDIEVESDGVKYVFSDGIGKISASFARKVAQKCGIRHT--PSAFQIRYA 610
V R +VEVIPDIE+ +DG KY+FSDGIGKIS FA++VA G+ T PSAFQIRY
Sbjct: 559 FEVLRWDVEVIPDIEITTDGSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYG 618
Query: 611 GFKGVISVDPTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVED 670
G+KGVI++DP SS+ LSLR SM K+ES L++ WSKS PCY+NR++I+LLSTLG+ D
Sbjct: 619 GYKGVIAIDPMSSIDLSLRPSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRD 678
Query: 671 HVFEKKQKELMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMML 730
+F Q++ M + + + T+ A L + E +K M+ GY P SEP+LSM+L
Sbjct: 679 EIFVAMQQDEMRETEEMLTNKEVALSVLGKLGGSETKTAVK-MLLQGYEPSSEPYLSMIL 738
Query: 731 LTFRQSKLLELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQ-DDHIIFKR 790
++++L ++R + +I +P GR ++GCLDETG LEYG+V+++ T + + Q D + +
Sbjct: 739 KAHQENRLTDIRTRCKIHVPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFY 798
Query: 791 GKSNRHFIATGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSG 850
+ G V + KNPCLHPGD+RVL A+ P L MVDC+VFPQ+G RPHPNECSG
Sbjct: 799 NDDGKTATVVGKVAITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSG 858
Query: 851 SDLDGDIYFVCWDPDLIPPQQVESMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGII 910
DLDGD+YF+ WD LIP + MDYT +++DH VT+EE+Q++F +YM+NDSLG I
Sbjct: 859 GDLDGDLYFITWDDKLIPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAI 918
Query: 911 ANAHTAFADREPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADK 970
+ AH ADR P KA S C++LA L S+AVDF KTG PA +P LR EYPDFM++ +K
Sbjct: 919 STAHLIHADRSPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEK 978
Query: 971 VTYQSENVLGKLFR-MLDEIEPNIDIRSFTRDVARQA--YDPDMEVEGFEEYLDNAIYHK 1030
Y S VLGKL+R + +E + D + + A+ + YDPD+EV G +E+L A +
Sbjct: 979 PMYISNGVLGKLYRSAMGHMEKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYY 1038
Query: 1031 GNYDMRLGNLMNYYRIKNEAELISGGSLSRSLSATKKNE-----AESIATAVRSLRKEAR 1090
Y+ +L LMNYYR + E E+++G ++ L + N+ + I AV +L +EAR
Sbjct: 1039 ELYEEKLTTLMNYYRAELEDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREAR 1098
Query: 1091 SWFNENAELHFRHGNNVYARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVCI 1124
W L R + ASAWY VTYH + + SFPW D L+ I
Sbjct: 1099 GWL-----LSSRKEEDASRMASAWYRVTYH-------PDRRRGKRFWSFPWIACDNLLAI 1111
BLAST of MS020747 vs. ExPASy Swiss-Prot
Match:
Q8LHH9 (Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHL2 PE=2 SV=1)
HSP 1 Score: 563.5 bits (1451), Expect = 5.3e-159
Identity = 359/943 (38.07%), Postives = 519/943 (55.04%), Query Frame = 0
Query: 224 DTKWFRATDFTPSCCIGQSSGLCLEIPYGRQLPNLHDKFAHYFKEIKGRFTLDRGSTYSS 283
D W R TD TPS IG+ I + + D+ Y +E + +D G +
Sbjct: 267 DDPWIRTTDITPSGAIGRCG--VYRISFSARFWPKMDRALDYMRERRVAI-VDCGGGWGP 326
Query: 284 NPNL-----VPIVRPPRNI--------NLPYAILFKINLLVQNGCLPGPALDISFYQMVD 343
L + P +++ L + +LF +N LV G + L F+ ++
Sbjct: 327 RRGLTVRDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLLG 386
Query: 344 PQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKYFKARNPPQPPIMSLNEGLVYVHR 403
N+ AL + K ++ L + ARN P+ + + V R
Sbjct: 387 RSEENVNVA--ALRDFWGDKFPVFDACGRLKKALNRV--ARN-PKLLCSKVGDDHAEVRR 446
Query: 404 VQVTPCRVYFCGPEVNVSNHVLRDYPEYLDNFLRVSFVDEELDKLYSTELSPRESSSLED 463
+ +TP R Y PEV SN VLR Y E D FLRV+F+DE + L + L+ + ++D
Sbjct: 447 LVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKD 506
Query: 464 -------GKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENSAWMFAPKDGITAAGI 523
KT ++KR+ +L +G + +K+ FLA+SS+QLR+ SAW FA T I
Sbjct: 507 LMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAI 566
Query: 524 RKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEVIPDIEVESDGVKYVFSDGIG 583
RKWMG F S +NVAK+AAR+GQ F S+ T+++ EV+ D V ++ Y+FSDGIG
Sbjct: 567 RKWMGRFTS-KNVAKHAARMGQCFSSTYATVTMRPDEVDESFDDVVHNE---YIFSDGIG 626
Query: 584 KISASFARKVAQKCGIR-HTPSAFQIRYAGFKGVISV--DPTSSVKLSLRNSMLKYESTD 643
KI+ A +VA++ + + PSA+QIR+AGFKGVI+V +L LR SM K+ES
Sbjct: 627 KITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNH 686
Query: 644 TKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKELMDQLDTIFTDSMKAQQALE 703
L+V+ W+K P +LNRQ+I LLS+L V D +F + Q+ ++ L+ I +D A + L
Sbjct: 687 LVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFEVL- 746
Query: 704 LMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLLELRRKSRIFIPNGRAMMGCL 763
S + N M+S G+ P +EP L MLL R ++L +L K+RIF+P GR +MGCL
Sbjct: 747 TTSCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCL 806
Query: 764 DETGNLEYGEVFVQCTA---HQQLQDDHIIFKRGKSNRHFIATGTVVVAKNPCLHPGDVR 823
DE G LE G+ F++ T + F N I GTVV+AKNPCLHPGDVR
Sbjct: 807 DELGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVI-LGTVVIAKNPCLHPGDVR 866
Query: 824 VLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPP--QQVESM 883
+L AVDVP LHH+VDC+VFPQKG RPH NE SGSDLDGD+YFV WD LIPP + M
Sbjct: 867 ILEAVDVPELHHLVDCLVFPQKGERPHANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPM 926
Query: 884 DYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPKKAMSKPCIELAK 943
DY+P +K L V+ ++ ++F M++++LG I NAH AD AM + CI LA+
Sbjct: 927 DYSPPEAKQLPRQVSQHDIIDFFLKNMISENLGRICNAHVVHADLSEYGAMDEKCIHLAE 986
Query: 944 LFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLGKLFRMLDEIEPNIDI 1003
L + AVDFPKTG A++P +L+ + YPDFM K D +Y+SE +LG+L+R + E +
Sbjct: 987 LAATAVDFPKTGKLAIMPPHLKPKVYPDFMGKEDGQSYKSEKILGRLYRSIQEASNGDVV 1046
Query: 1004 RSFTRDVARQAYDPDMEVEGFEEYLDNAIYHKGNYDMRLGNLMNYYRIKNEAELISG--G 1063
YD D+EV G ++L +A K +YD +L L++ YR++ EAEL++G
Sbjct: 1047 SQEVCTPNDLPYDIDLEVPGASDFLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHIT 1106
Query: 1064 SLSRSLSATKKNEAESIATAVRSLRKEARSWF----NENAELHFRHGNNVY-ARASAWYF 1123
L ++ S + + + + TA +LRKE +S F ++ E+ N +Y +ASAWY
Sbjct: 1107 FLVKNSSKKQGDIKDRLKTAYSALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQ 1166
BLAST of MS020747 vs. ExPASy TrEMBL
Match:
A0A6J1D0F4 (RNA-dependent RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111015912 PE=3 SV=1)
HSP 1 Score: 2231.8 bits (5782), Expect = 0.0e+00
Identity = 1095/1130 (96.90%), Postives = 1100/1130 (97.35%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVIQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQLYGFPTGV+QEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK
Sbjct: 1 MGKTIQLYGFPTGVVQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
Query: 61 LIIFLANGRLYYGSSYLKANEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
LIIFLANGRLYYGSSYLKA EWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL
Sbjct: 61 LIIFLANGRLYYGSSYLKAKEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENIWQVQLHKPQGQSDVDYLLIQVHPLTFI 180
NVSVDFGFDRRVLSFFISHSHVDYMLVLRYEN+WQVQLHKPQGQSDVDYLLI
Sbjct: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENVWQVQLHKPQGQSDVDYLLI-------- 180
Query: 181 NHTIIIMTCFHYQLFGAPRIYERKSVSFGPILYDPFINFSKEIDTKWFRATDFTPSCCIG 240
QLFGAPRIYER S SFGPIL DPFINFSKEIDTKWFRATDFTPSCCIG
Sbjct: 181 ------------QLFGAPRIYERNSESFGPILDDPFINFSKEIDTKWFRATDFTPSCCIG 240
Query: 241 QSSGLCLEIPYGRQLPNLHDKFAHYFKEIKGRFTLDRGSTYSSNPNLVPIVRPPRNINLP 300
QSSGLCLEIPYGRQLPNLHDKFAHYFKEIKG+FTLDRGSTYSSNPNLVPIVRPPRNI+LP
Sbjct: 241 QSSGLCLEIPYGRQLPNLHDKFAHYFKEIKGKFTLDRGSTYSSNPNLVPIVRPPRNISLP 300
Query: 301 YAILFKINLLVQNGCLPGPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWL 360
YAILFKINLLVQNGCLPGPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWL
Sbjct: 301 YAILFKINLLVQNGCLPGPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWL 360
Query: 361 DDEYRKYFKARNPPQPPIMSLNEGLVYVHRVQVTPCRVYFCGPEVNVSNHVLRDYPEYLD 420
DDEYRKYFKARNPPQPPIMSLNEGLVYVHRVQVTPCRVYFCGPEVNVSN VLR YPEYLD
Sbjct: 361 DDEYRKYFKARNPPQPPIMSLNEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLD 420
Query: 421 NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYS 480
NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYS
Sbjct: 421 NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYS 480
Query: 481 SSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRRE 540
SSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRRE
Sbjct: 481 SSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRRE 540
Query: 541 VEVIPDIEVESDGVKYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVD 600
VEVIPDIEVESDGVKYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVD
Sbjct: 541 VEVIPDIEVESDGVKYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISVD 600
Query: 601 PTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKE 660
PTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKE
Sbjct: 601 PTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQKE 660
Query: 661 LMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLL 720
LMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLL
Sbjct: 661 LMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKLL 720
Query: 721 ELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIAT 780
ELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIAT
Sbjct: 721 ELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIAT 780
Query: 781 GTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFV 840
GTV VAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFV
Sbjct: 781 GTVAVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFV 840
Query: 841 CWDPDLIPPQQVESMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADR 900
CWDPDLIPPQQVE MDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADR
Sbjct: 841 CWDPDLIPPQQVEPMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADR 900
Query: 901 EPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLG 960
EPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLG
Sbjct: 901 EPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVLG 960
Query: 961 KLFRMLDEIEPNIDIRSFTRDVARQAYDPDMEVEGFEEYLDNAIYHKGNYDMRLGNLMNY 1020
KLFRMLDEIEP IDIRSFTRDVARQAYDPDMEVEGFEEYLD+AIYHKGNYDMRLGNLMNY
Sbjct: 961 KLFRMLDEIEPKIDIRSFTRDVARQAYDPDMEVEGFEEYLDDAIYHKGNYDMRLGNLMNY 1020
Query: 1021 YRIKNEAELISGGSLSRSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVY 1080
YRIKNEAELISGGSLSRSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVY
Sbjct: 1021 YRIKNEAELISGGSLSRSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGNNVY 1080
Query: 1081 ARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVCIKKQKISAR 1131
ARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLV IKKQKISAR
Sbjct: 1081 ARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVRIKKQKISAR 1110
BLAST of MS020747 vs. ExPASy TrEMBL
Match:
A0A6J1FR02 (RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111447986 PE=3 SV=1)
HSP 1 Score: 1881.7 bits (4873), Expect = 0.0e+00
Identity = 930/1133 (82.08%), Postives = 1001/1133 (88.35%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVIQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQLYGFP+GV+QE VK FVER TG G+IDAI KRS GRGKR+ A IQF +D GAK
Sbjct: 1 MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
Query: 61 LIIFLANGRLYYGSSYLKANEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
LII LAN L YG+SYLKA EWKQDIL +PLVFEYNFKGL LHLGCQIS+E FFVL E
Sbjct: 61 LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENIWQVQLHKPQGQSDVDYLLIQVHPLTFI 180
NVSV+F F+RR L FFISH VDYMLVLRYENIWQV+LHKPQGQS +DYLLI
Sbjct: 121 NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQS-IDYLLI-------- 180
Query: 181 NHTIIIMTCFHYQLFGAPRIYERKSVSFGPILYDPFINFSKEIDTKWFRATDFTPSCCIG 240
QL GAPRIYER + FG I DPF++FSKE+DTKWFRATDFTPSCCIG
Sbjct: 181 ------------QLVGAPRIYERDTKLFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIG 240
Query: 241 QSSGLCLEIPYGRQLPNLHDKFAHYFKEIKGRFTLDRGSTYSSNPNLVPIVRPPRNINLP 300
QS LCLEIPYGR LPN HDKFA YF EIKG+FTL GSTYSSN NLVP+VRPP +I+LP
Sbjct: 241 QSGALCLEIPYGRLLPNFHDKFA-YFNEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLP 300
Query: 301 YAILFKINLLVQNGCLPGPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWL 360
YAILFKINLLVQ GCLPGP+LDISFY+MVDPQ +NI FID AL KLY LKECCYNPSKWL
Sbjct: 301 YAILFKINLLVQQGCLPGPSLDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWL 360
Query: 361 DDEYRKYFKARNPPQPPIMSLNEGLVYVHRVQVTPCRVYFCGPEVNVSNHVLRDYPEYLD 420
+EYRKY K NPPQPP +SL+EGLVYVHRVQVTPCRVYFCGPEVNVSN VLR YPEYLD
Sbjct: 361 GEEYRKYSKLTNPPQPPNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLD 420
Query: 421 NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYS 480
NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYS
Sbjct: 421 NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYS 480
Query: 481 SSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRRE 540
SSQLREN+ WMFAP+DGITAA IRKWMGDF SIRNVAKYAARLGQSFGSSTET SV RRE
Sbjct: 481 SSQLRENAVWMFAPRDGITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRRE 540
Query: 541 VEVIPDIEVESD-GVKYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISV 600
V+VIPDIEV+SD G+ YVFSDGIGKISASFAR+VA+KC IRHTPSAFQIRYAGFKGVISV
Sbjct: 541 VKVIPDIEVKSDAGINYVFSDGIGKISASFAREVARKCHIRHTPSAFQIRYAGFKGVISV 600
Query: 601 DPTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQK 660
DPTS VKLSLRNSMLKYESTDTKLDVL WS+ PCYLNRQLITLLSTLGV+D +FE KQK
Sbjct: 601 DPTSFVKLSLRNSMLKYESTDTKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQK 660
Query: 661 ELMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKL 720
EL+DQLDTIF D +KAQQALELMSPGE TN+LKE+ISCGYRPDSEPFL MML TFR+SKL
Sbjct: 661 ELIDQLDTIFMDPLKAQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKL 720
Query: 721 LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIA 780
LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQC+AHQQL +DHIIFKR KSN+HFI
Sbjct: 721 LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIV 780
Query: 781 TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYF 840
TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDC+VFPQKGPRPHPNECSGSDLDGDIYF
Sbjct: 781 TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYF 840
Query: 841 VCWDPDLIPPQQVESMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD 900
VCWDPDLIPPQQVE MDYTPVPS+LLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD
Sbjct: 841 VCWDPDLIPPQQVEPMDYTPVPSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD 900
Query: 901 REPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVL 960
P+KAMS+PCI+LAKLFSIAVDFPKTGVPALI A+LRV+ YPDFMDK DK +Y+S NVL
Sbjct: 901 SRPEKAMSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVL 960
Query: 961 GKLFRMLDEIEPNIDIRS--FTRDVARQAYDPDMEVEGFEEYLDNAIYHKGNYDMRLGNL 1020
GKLFRMLD+IEP I I+S FTR++ARQAYDPDMEV+GFEEYLD+A+YHK NYDMRLGNL
Sbjct: 961 GKLFRMLDDIEPRISIKSVKFTREIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNL 1020
Query: 1021 MNYYRIKNEAELISGGSLSRSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGN 1080
M YY+IK EAELISG SL++S S TKKNEAESI AV+SLRKEAR WFNENA LHF H N
Sbjct: 1021 MKYYKIKTEAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDN 1080
Query: 1081 NVYARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVCIKKQKISAR 1131
N YARASAWYFVTYH+SYWGW+ E K+ H +SFPWCVYDKL+ IKK+KI AR
Sbjct: 1081 NAYARASAWYFVTYHYSYWGWYGE-KNESHFLSFPWCVYDKLIRIKKRKIGAR 1110
BLAST of MS020747 vs. ExPASy TrEMBL
Match:
E9NWK7 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G239640 PE=2 SV=1)
HSP 1 Score: 1879.4 bits (4867), Expect = 0.0e+00
Identity = 930/1134 (82.01%), Postives = 1004/1134 (88.54%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVIQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQL+GFP+GV+QE VK FVE ITG+GTIDAI TKRS G G+RV A IQFT++EGAK
Sbjct: 1 MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
Query: 61 LIIFLANGRLYYGSSYLKANEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
II A RL YG+SYLKA E K DILP+PLVF+YNFK LRLHLGCQISKESF VL TE
Sbjct: 61 SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENIWQVQLHKPQGQSDVDYLLIQVHPLTFI 180
NVSVDFGF+ R L FFIS+ VDYMLVLRYENIWQV+LHKP GQS VDYLLI
Sbjct: 121 NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQS-VDYLLI-------- 180
Query: 181 NHTIIIMTCFHYQLFGAPRIYERKSVSFGPILYDPFINFSKEIDTKWFRATDFTPSCCIG 240
QLFGAPRIYER + SFG I DPF+NFS EIDT+WFRATDFTPSC IG
Sbjct: 181 ------------QLFGAPRIYERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIG 240
Query: 241 QSSGLCLEIPYGRQLPNLHDKFAHYFKEIKGRFTLDRGSTYSSNPNLVPIVRPPRNINLP 300
QS+ LCLEIPYGRQLPN HDKFA YFKEIKG+FTL GSTYSSN NLVP+V PPR INLP
Sbjct: 241 QSAALCLEIPYGRQLPNFHDKFA-YFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLP 300
Query: 301 YAILFKINLLVQNGCLPGPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWL 360
Y ILFKINLLVQ GCLPGPALDISFYQMVD Q N IDHAL KL HLKECCYNPSKWL
Sbjct: 301 YTILFKINLLVQQGCLPGPALDISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWL 360
Query: 361 DDEYRKYFKARNPPQPPIMSLNEGLVYVHRVQVTPCRVYFCGPEVNVSNHVLRDYPEYLD 420
D+EYRKYFK +NPPQPPI++LNEGLVYVHRVQVTPC+VYFCGPEVN+SN VLR YP+Y+D
Sbjct: 361 DEEYRKYFKLKNPPQPPILTLNEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYID 420
Query: 421 NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYS 480
NFLRVSFVDEEL K+YSTELSPR SSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYS
Sbjct: 421 NFLRVSFVDEELGKMYSTELSPRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYS 480
Query: 481 SSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRRE 540
SSQLREN+AWMFAPK+ +TAA IR+WMGDF +IRNVAKYAARLGQSFGSSTETLSV RRE
Sbjct: 481 SSQLRENAAWMFAPKNELTAAKIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRRE 540
Query: 541 VEVIPDIEVES-DGVKYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISV 600
V+VIPDIEVES GV YVFSDGIGKI+ASFARKVA+KCGIRHTPSAFQIRYAGFKGVISV
Sbjct: 541 VKVIPDIEVESGSGVNYVFSDGIGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISV 600
Query: 601 DPTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQK 660
DPTSSVKLSLRNSMLKYESTDTKLDVL WSK PC+LNRQLITLLSTLGV+DHVFE KQ+
Sbjct: 601 DPTSSVKLSLRNSMLKYESTDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQ 660
Query: 661 ELMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKL 720
EL+D+LDTIF+D +KAQQALELMSPGE T +LKEM+ CGY+PDSEPFL MML TFR+SKL
Sbjct: 661 ELIDELDTIFSDPLKAQQALELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKL 720
Query: 721 LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIA 780
+ELR KSRIFIPNGRAMMGCLDET NLEYGEVFVQC+AHQQL DD +IFKR KSNRHFI
Sbjct: 721 MELRMKSRIFIPNGRAMMGCLDETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIV 780
Query: 781 TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYF 840
TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHM+DCVVFPQKG RPHPNECSGSDLDGDIYF
Sbjct: 781 TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYF 840
Query: 841 VCWDPDLIPPQQVESMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD 900
VCWDPDLIPPQQVE MDYTPVPS++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD
Sbjct: 841 VCWDPDLIPPQQVEPMDYTPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD 900
Query: 901 REPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVL 960
+EPKKAMS PCI+LAKLFSIAVDFPKTGVPALIPANLRV+EYPDFMDKADKVTY+SENVL
Sbjct: 901 KEPKKAMSNPCIQLAKLFSIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVL 960
Query: 961 GKLFRMLDEIEPNI-DIRSF--TRDVARQAYDPDMEVEGFEEYLDNAIYHKGNYDMRLGN 1020
GKLFRMLD I PNI +IRSF T ++ARQ YDPDMEVEGFEEYLD+AIYHK NYDMRLGN
Sbjct: 961 GKLFRMLDSIGPNIKNIRSFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGN 1020
Query: 1021 LMNYYRIKNEAELISGGSLSRSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHG 1080
LM+Y++IK EAELISGGSL+ SLS T KNEAESI AV+SLRKEAR WFNE A+LH+ H
Sbjct: 1021 LMHYHKIKTEAELISGGSLTSSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHH 1080
Query: 1081 NNVYARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVCIKKQKISAR 1131
NVYARASAWYFVTYHH+YWGW D K+HGH +SFPWCVYDKL+ IK +KI+ R
Sbjct: 1081 TNVYARASAWYFVTYHHTYWGWSDGRKNHGHFLSFPWCVYDKLIRIKHRKINCR 1112
BLAST of MS020747 vs. ExPASy TrEMBL
Match:
H3K3Y9 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1 PE=2 SV=1)
HSP 1 Score: 1869.7 bits (4842), Expect = 0.0e+00
Identity = 927/1134 (81.75%), Postives = 1000/1134 (88.18%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVIQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQL+GFP+GV+QE VK FVE ITG+GTIDAI TKRS G G+RV A IQFT++EGAK
Sbjct: 1 MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60
Query: 61 LIIFLANGRLYYGSSYLKANEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
II A RL YG+SYLKA E K DILP+PLVF+YNFK LRLHLGCQISKESF VL TE
Sbjct: 61 SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENIWQVQLHKPQGQSDVDYLLIQVHPLTFI 180
NVSVDFGFD R L FFIS+ VDYMLVLRYENIWQV+LHKP GQS VDYLLI
Sbjct: 121 NVSVDFGFDVRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQS-VDYLLI-------- 180
Query: 181 NHTIIIMTCFHYQLFGAPRIYERKSVSFGPILYDPFINFSKEIDTKWFRATDFTPSCCIG 240
QLFGAPRIYER + SFG I DPF+NFS EIDT+WFRATDFTPSC IG
Sbjct: 181 ------------QLFGAPRIYERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIG 240
Query: 241 QSSGLCLEIPYGRQLPNLHDKFAHYFKEIKGRFTLDRGSTYSSNPNLVPIVRPPRNINLP 300
QS+ LCLEI YGRQLPN HDKFA YFKEIKG+FTL GSTYSSN NLVP+V PPR INLP
Sbjct: 241 QSAALCLEILYGRQLPNFHDKFA-YFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLP 300
Query: 301 YAILFKINLLVQNGCLPGPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWL 360
Y ILFKINLLVQ GCLPGPALDISFYQMVD Q N IDHAL KL HLKECCYNPSKWL
Sbjct: 301 YTILFKINLLVQQGCLPGPALDISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWL 360
Query: 361 DDEYRKYFKARNPPQPPIMSLNEGLVYVHRVQVTPCRVYFCGPEVNVSNHVLRDYPEYLD 420
D+EYRKYFK +NPPQPPI++LNEGLVYVHRVQVTPC+VYFCGPEVN+SN VLR YP+Y+D
Sbjct: 361 DEEYRKYFKLKNPPQPPILTLNEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYID 420
Query: 421 NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYS 480
NFLRVSFVDEEL K+YSTELSPR SSSLEDGKTKI KRILSVLRDGITIGDKKFEFLAYS
Sbjct: 421 NFLRVSFVDEELGKMYSTELSPRASSSLEDGKTKILKRILSVLRDGITIGDKKFEFLAYS 480
Query: 481 SSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRRE 540
SSQLREN+AWMFAPK+ +TAA IR+WMGDF +IRNVAKYAARLGQ FGSSTETLSV RRE
Sbjct: 481 SSQLRENAAWMFAPKNELTAAKIRQWMGDFHNIRNVAKYAARLGQPFGSSTETLSVSRRE 540
Query: 541 VEVIPDIEVES-DGVKYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISV 600
V+VIPDIEVES GV YVFSDGIGKI+ASFARKVA+KCGIRHTPSAFQIRYAGFKGVISV
Sbjct: 541 VKVIPDIEVESGSGVNYVFSDGIGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISV 600
Query: 601 DPTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQK 660
DPTSSVKLSLRNSMLKYESTDTKLDVL WSK PC+LNRQLITLLSTLGV+DHVFE KQ+
Sbjct: 601 DPTSSVKLSLRNSMLKYESTDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQ 660
Query: 661 ELMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKL 720
EL+D+LDTIF+D +KAQQALELMSPGE T +LKEM+ CGY+PDSEPFL MML TFR+SKL
Sbjct: 661 ELIDELDTIFSDPLKAQQALELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKL 720
Query: 721 LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIA 780
+ELR KSRIFIPNGRAMMGCLDET NLEYGEVF QC+AHQQL DD +IFKR KSNRHFI
Sbjct: 721 MELRMKSRIFIPNGRAMMGCLDETRNLEYGEVFWQCSAHQQLHDDRVIFKRIKSNRHFIV 780
Query: 781 TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYF 840
TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHM+DCVVFPQKG RPHPNECSGSDLDGDIYF
Sbjct: 781 TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYF 840
Query: 841 VCWDPDLIPPQQVESMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD 900
VCWDPDLIPPQQVE MDYTPVPS++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD
Sbjct: 841 VCWDPDLIPPQQVEPMDYTPVPSQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD 900
Query: 901 REPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVL 960
+EPKKAMS PCI+LAKLFSIAVDFPKTGVPALIPANLRV+EYPDFMDKADKVTY+SENVL
Sbjct: 901 KEPKKAMSNPCIQLAKLFSIAVDFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVL 960
Query: 961 GKLFRMLDEIEPNI-DIRSF--TRDVARQAYDPDMEVEGFEEYLDNAIYHKGNYDMRLGN 1020
GKLFRMLD I PNI +IRSF T ++ARQ YDPDMEVEGFEEYLD+AIYHK NYDMRLGN
Sbjct: 961 GKLFRMLDSIGPNIKNIRSFNYTPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGN 1020
Query: 1021 LMNYYRIKNEAELISGGSLSRSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHG 1080
LM+Y++IK EAELISGGSL+ SLS T KNEAESI AV+SLRKEAR WFNE A+LH+ H
Sbjct: 1021 LMHYHKIKTEAELISGGSLTSSLSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHH 1080
Query: 1081 NNVYARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVCIKKQKISAR 1131
NVYARASAWYFVTYHH+YWGW D K+HGH +SFPWCVYDKL+ IK +KI+ R
Sbjct: 1081 TNVYARASAWYFVTYHHTYWGWSDGRKNHGHFLSFPWCVYDKLIRIKHRKINCR 1112
BLAST of MS020747 vs. ExPASy TrEMBL
Match:
A0A6J1K2Q9 (RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111490531 PE=3 SV=1)
HSP 1 Score: 1866.7 bits (4834), Expect = 0.0e+00
Identity = 927/1133 (81.82%), Postives = 996/1133 (87.91%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVIQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQLYGFP+GV+QE VK FVER TG G+IDAI KRS GRGKR+ A IQF +D GAK
Sbjct: 1 MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60
Query: 61 LIIFLANGRLYYGSSYLKANEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
LII LAN L YG+S LKA EWKQDIL +PLVFEYNFKGL LHLGCQIS+E FFVL TE
Sbjct: 61 LIISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWTES 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENIWQVQLHKPQGQSDVDYLLIQVHPLTFI 180
NVSV+F F+RR L FFISH VDYMLVLRYENIWQV+LHKP GQS +DYLLI
Sbjct: 121 NVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQS-IDYLLI-------- 180
Query: 181 NHTIIIMTCFHYQLFGAPRIYERKSVSFGPILYDPFINFSKEIDTKWFRATDFTPSCCIG 240
QL GAPRIYER + FG I DPF++FSKE+DT+WFRATDFTPSCCIG
Sbjct: 181 ------------QLVGAPRIYERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIG 240
Query: 241 QSSGLCLEIPYGRQLPNLHDKFAHYFKEIKGRFTLDRGSTYSSNPNLVPIVRPPRNINLP 300
QS LCLEIPYGRQLPN HDKFA YFKEIKG+FTL GSTYSSN NLVP+VRPP +I+LP
Sbjct: 241 QSGALCLEIPYGRQLPNFHDKFA-YFKEIKGKFTLATGSTYSSNVNLVPVVRPPLSIHLP 300
Query: 301 YAILFKINLLVQNGCLPGPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWL 360
YAILFKINLLVQ GCLPGPALDISFY+MVDPQ +NI FID AL KLY LKECCYNPSKWL
Sbjct: 301 YAILFKINLLVQQGCLPGPALDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWL 360
Query: 361 DDEYRKYFKARNPPQPPIMSLNEGLVYVHRVQVTPCRVYFCGPEVNVSNHVLRDYPEYLD 420
+EYRKY K NPPQPP +SL+EGLVYVHRVQVTPCRVYFCGPEVNVSN VLR YPEYLD
Sbjct: 361 GEEYRKYSKLTNPPQPPNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLD 420
Query: 421 NFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYS 480
NFLRVSFVDEELD+LYSTELSPRESSSL DGKTKIFKRILSVL+DGITIGDKKFEFLAYS
Sbjct: 421 NFLRVSFVDEELDRLYSTELSPRESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYS 480
Query: 481 SSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRRE 540
SSQLREN+ WMFAP+DGITAA IRKWMGDF SIRNVAKYAARLGQSFGSSTET SV RRE
Sbjct: 481 SSQLRENAVWMFAPRDGITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRRE 540
Query: 541 VEVIPDIEVESD-GVKYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISV 600
VEVIPDIEVESD G+ YVFSDGIGKISASFAR+VA+KC IRHTPSAFQIRYAGFKGVISV
Sbjct: 541 VEVIPDIEVESDAGINYVFSDGIGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISV 600
Query: 601 DPTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQK 660
DPTS VKLSLRNSMLKYESTD KLDVL WS+ PCYLNRQLITLLSTLGV+D +FE KQK
Sbjct: 601 DPTSFVKLSLRNSMLKYESTDMKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQK 660
Query: 661 ELMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKL 720
EL+DQLDTIF + +KAQQALELMSPGE TN+LKE+ISCGYRPDSEPFL MML TFR+SKL
Sbjct: 661 ELIDQLDTIFMNPLKAQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKL 720
Query: 721 LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFIA 780
LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQC+AHQQL +DHIIFKR KSN+HFI
Sbjct: 721 LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIV 780
Query: 781 TGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYF 840
TGTVVVAKNPCLHPGDVRVLTAVDVP+LHHMVDC+VFPQKGPRPHPNECSGSDLDGDIYF
Sbjct: 781 TGTVVVAKNPCLHPGDVRVLTAVDVPALHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYF 840
Query: 841 VCWDPDLIPPQQVESMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD 900
VCWDPDLIP QQVE MDYTPV S+LLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD
Sbjct: 841 VCWDPDLIPHQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD 900
Query: 901 REPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENVL 960
P+KAMS+PCI+LAKLFSIAVDFPKTGVPALI A+LRV+ YPDFMDK DK Y+S NVL
Sbjct: 901 SWPEKAMSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVL 960
Query: 961 GKLFRMLDEIEPNIDIRS--FTRDVARQAYDPDMEVEGFEEYLDNAIYHKGNYDMRLGNL 1020
GKLFRMLD+IEP I I+S FTR++ARQAYDPDMEVEGFEEYLD+A+YHK NYDMRLGNL
Sbjct: 961 GKLFRMLDDIEPRISIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNL 1020
Query: 1021 MNYYRIKNEAELISGGSLSRSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGN 1080
M YY+IK EAELISG SL++S S TKKNEAESI AV+SLRKEAR WFNENA LHF H N
Sbjct: 1021 MKYYKIKTEAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDN 1080
Query: 1081 NVYARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVCIKKQKISAR 1131
N YARASAWYFVTYH+SYWGWF E K+ H +SFPWCVYDKL+ IKK+KI R
Sbjct: 1081 NAYARASAWYFVTYHYSYWGWFGE-KNESHFLSFPWCVYDKLIRIKKRKIGPR 1110
BLAST of MS020747 vs. TAIR 10
Match:
AT1G14790.1 (RNA-dependent RNA polymerase 1 )
HSP 1 Score: 1347.4 bits (3486), Expect = 0.0e+00
Identity = 684/1133 (60.37%), Postives = 832/1133 (73.43%), Query Frame = 0
Query: 1 MGKTIQLYGFPTGVIQEEVKEFVERITGSGTIDAIKTKRSNGRGKRVCATIQFTNDEGAK 60
MGKTIQ++GFP GV EEVK+F+ER+TGSGT+ AIK ++ G RV A +QFT++ +
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 61 LIIFLANGRLYYGSSYLKANEWKQDILPNPLVFEYNFKGLRLHLGCQISKESFFVLQTEL 120
LII A RLYYG SYLKA E +QDI+P P + GL++ GCQ+S + F L +
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120
Query: 121 NVSVDFGFDRRVLSFFISHSHVDYMLVLRYENIWQVQLHKPQGQSDVDYLLIQVHPLTFI 180
+V V FG R L F S DY L L YENIWQ+ LH PQG+S +L+IQV
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSS-KFLVIQV------ 180
Query: 181 NHTIIIMTCFHYQLFGAPRIYERKSVSFGPILYDPFINFSKEIDTKWFRATDFTPSCCIG 240
GAP+I+E++ +L+ +S D +W R TDFT S CIG
Sbjct: 181 --------------IGAPKIFEKEDQPIN-LLFGIMDFYSDGSDEQWIRTTDFTSSSCIG 240
Query: 241 QSSGLCLEIPYGRQLPNLHDKFAHYFKEIKGRFTLDRGSTYSSNPN-LVPIVRPPRNINL 300
QS+ CLE+P +P+ + FA+Y + F ++ GS+YSSN N LVP+V PP +L
Sbjct: 241 QSTAFCLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSL 300
Query: 301 PYAILFKINLLVQNGCLPGPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKW 360
P+ ILFK+N LVQN CL GPALD+ FY++++ ++ + IDH L KL+HL ECCY P+ W
Sbjct: 301 PFEILFKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHW 360
Query: 361 LDDEYRKYFKARNPPQPPIMSLNEGLVYVHRVQVTPCRVYFCGPEVNVSNHVLRDYPEYL 420
L DEY+K+ P P +SL++GLVY++RVQVTP RVYF GPEVNVSN VLR Y +Y+
Sbjct: 361 LRDEYKKWISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYI 420
Query: 421 DNFLRVSFVDEELDKLYSTELSPRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAY 480
+NFLRVSFVDE+L+K+ S +LSPR S+ +TK++ RI SVLRDGI IGDKKFEFLA+
Sbjct: 421 NNFLRVSFVDEDLEKVRSMDLSPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAF 480
Query: 481 SSSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRR 540
SSSQLRENSAWMFAP D ITAA IR WMGDF IRNVAKYAARLGQSF SS ETL+V
Sbjct: 481 SSSQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSD 540
Query: 541 EVEVIPDIEVESDGVKYVFSDGIGKISASFARKVAQKCGI-RHTPSAFQIRYAGFKGVIS 600
E+EVIPD+E+ S G +YVFSDGIGKISA FARKVA+KCG+ +PSAFQIRY G+KGV++
Sbjct: 541 EIEVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVA 600
Query: 601 VDPTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQ 660
VDP SS KLSLR SM K+ES +TKLDVL WSK PCY+NRQLITLLSTLGV D VFEKKQ
Sbjct: 601 VDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQ 660
Query: 661 KELMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSK 720
+E++D+LD I T ++A +AL LM+PGE TN+LK +I CGY+PD+EPFLSMML FR SK
Sbjct: 661 REVVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASK 720
Query: 721 LLELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRGKSNRHFI 780
LLELR K+RIFI GR+MMGCLDET LEYG+V VQ + + R FI
Sbjct: 721 LLELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYSDPM------------RPGRRFI 780
Query: 781 ATGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIY 840
TG VVVAKNPCLHPGDVRVL AV+VP+L+HMVDCVVFPQKG RPHPNECSGSDLDGDIY
Sbjct: 781 ITGPVVVAKNPCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIY 840
Query: 841 FVCWDPDLIPPQQVESMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFA 900
FVCWD +L+PP+ E MDYTP P+++LDHDVT+EEV+EYFANY+VNDSLGIIANAHTAFA
Sbjct: 841 FVCWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFA 900
Query: 901 DREPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQSENV 960
D+EP KA S PCIELAK FS AVDFPKTGV A+IP +L V+EYPDFM+K DK TY+S+NV
Sbjct: 901 DKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNV 960
Query: 961 LGKLFRMLDE-IEPNIDIRSFTRDVARQAYDPDMEVEGFEEYLDNAIYHKGNYDMRLGNL 1020
+GKLFR + E P I I+SFT DVA ++YD DMEV+GFEEY+D A Y K NYD +LGNL
Sbjct: 961 IGKLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNL 1020
Query: 1021 MNYYRIKNEAELISGGSLSRSLSATKKNEAESIATAVRSLRKEARSWFNENAELHFRHGN 1080
M+YY IK EAE++SGG + S S TK+ +AESI AVR+LRKE S FN + E
Sbjct: 1021 MDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEE-----EE 1080
Query: 1081 NVYARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVCIKKQKISAR 1131
N A+ASAWY VTYH SYWG ++EG + H +SF WCVYDKLV IKK + R
Sbjct: 1081 NESAKASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRR 1091
BLAST of MS020747 vs. TAIR 10
Match:
AT4G11130.1 (RNA-dependent RNA polymerase 2 )
HSP 1 Score: 737.3 bits (1902), Expect = 1.9e-212
Identity = 429/1142 (37.57%), Postives = 652/1142 (57.09%), Query Frame = 0
Query: 4 TIQLYGFPTGVIQEEVKEFVERITGSGTIDA--IKTKRSNGRGKRVCATIQFTNDE-GAK 63
T+++ P ++ +E+ F+E G T+ A I T R N + R A +QFT E ++
Sbjct: 11 TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWK-PRDFARVQFTTLEVKSR 70
Query: 64 LIIFLANGRLYYGSSYLKANEWKQDILPNPLVFEYNFKGLRLHLGCQISKES-FFVLQTE 123
+ + +L + + L+ +E DI+P P+ + L +G S E F L+
Sbjct: 71 AQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKW 130
Query: 124 LNVSVDFGFDRRVLSFFISHSHVDYMLVLRYENIWQVQLHKPQGQ-SDVDYLLIQVHPLT 183
V ++R + F++ S Y + +R+E+I + G S++D L+
Sbjct: 131 DGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLL------ 190
Query: 184 FINHTIIIMTCFHYQLFGAPRIYERKSVSFGPILYDPFINFSKE-IDTKWFRATDFTPSC 243
+L P++++R +V F KE D W R TDF+ S
Sbjct: 191 --------------KLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSK 250
Query: 244 CIGQSSGLCLEIPYGRQLPNLHDKFAHYFKEIKGRFTLDRGSTYSSNPNLVPIVRPP-RN 303
IG S+ CLE+ G + ++ Y++E T G T++S +VP++
Sbjct: 251 SIGTSTCFCLEVHNGSTMLDIFSGLP-YYREDTLSLTYVDGKTFASAAQIVPLLNAAILG 310
Query: 304 INLPYAILFKINLLVQNGCLP-GPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYN 363
+ PY ILF++N LV + A D+ +++ + L KL+ CY+
Sbjct: 311 LEFPYEILFQLNALVHAQKISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYD 370
Query: 364 PSKWLDDEYRKYF-KARNPPQPPIMSLNE-GLVYVHRVQVTPCRVYFCGPEVNVSNHVLR 423
P ++ + + K ++ P L E ++ R VTP ++Y GPE+ +N+V++
Sbjct: 371 PVFFVKTQMQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVK 430
Query: 424 DYPEYLDNFLRVSFVDEELDKLYSTELS--PRESSSLEDGKTKIFKRILSVLRDGITIGD 483
++ E++ +F+RV+FV+E+ KL + LS +E ++ +T I+ R+LS+L +GIT+G
Sbjct: 431 NFAEHVSDFMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGP 490
Query: 484 KKFEFLAYSSSQLRENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSST 543
K+FEFLA+S+SQLR NS WMFA + + A IR+WMG FR IR+++K AAR+GQ F +S
Sbjct: 491 KRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASR 550
Query: 544 ETLSVGRREVEVIPDIEVESDGVKYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYA 603
+TL V ++VE IPDIEV +DG Y FSDGIGKIS +FA++VAQKCG+ H PSAFQIRY
Sbjct: 551 QTLIVRAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYG 610
Query: 604 GFKGVISVDPTSSVKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVED 663
G+KGVI+VD +S KLSLR+SMLK++S + L+V W++S+PC+LNR++I LLSTLG+ED
Sbjct: 611 GYKGVIAVDRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIED 670
Query: 664 HVFEKKQKELMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMML 723
+FE Q + L + D A L+ +S N+L +M+ GY P SEP+LSMML
Sbjct: 671 AMFEAMQAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMML 730
Query: 724 LTFRQSKLLELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCT-AHQQLQDDHIIFKR 783
+S+L EL+ + RI +P GR ++GC+DE G LEYG+V+V+ T +L+ + R
Sbjct: 731 RVHHESQLSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFR 790
Query: 784 GKSNRHFIATGTVVVAKNPCLHPGDVRVLTAVDVPSLHH--MVDCVVFPQKGPRPHPNEC 843
+ G VVV KNPCLHPGD+RVL A+ +DC++FPQKG RPHPNEC
Sbjct: 791 KIDEETSVVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNEC 850
Query: 844 SGSDLDGDIYFVCWDPDLIPPQQVESMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLG 903
SG DLDGD +FV WD +IP + MDY +L+DHDVT+EE+ ++F +YM++D+LG
Sbjct: 851 SGGDLDGDQFFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLG 910
Query: 904 IIANAHTAFADREPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKA 963
+I+ AH ADR+P+KA S+ C+ELA L S AVDF KTG PA +P L+ E+PDF+++
Sbjct: 911 VISTAHLVHADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERF 970
Query: 964 DKVTYQSENVLGKLFRMLDEIEPNIDIRSFTRDVARQAYDPDMEVEGFEEYLDNAIYHKG 1023
+K TY SE+V GKL+R + + + D AYD +E GFE +++ A H+
Sbjct: 971 EKPTYISESVFGKLYRAVKSSLAQRKPEAESEDTV--AYDVTLEEAGFESFIETAKAHRD 1030
Query: 1024 NYDMRLGNLMNYYRIKNEAELISGGSLSRSLSATKKNE-----AESIATAVRSLRKEARS 1083
Y +L +LM YY NE E+++G ++ + + N + I +V+ L KEA
Sbjct: 1031 MYGEKLTSLMIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMG 1090
Query: 1084 WFNENAELHFRHGNNVYARASAWYFVTYHHSYWGWFDEGKDHGHLISFPWCVYDKLVCIK 1126
WF ++ E ASAWY+VTY+ ++ + +SFPW V D L+ IK
Sbjct: 1091 WFEKSCE----DEQQKKKLASAWYYVTYNPNH------RDEKLTFLSFPWIVGDVLLDIK 1116
BLAST of MS020747 vs. TAIR 10
Match:
AT3G49500.1 (RNA-dependent RNA polymerase 6 )
HSP 1 Score: 552.7 bits (1423), Expect = 6.6e-157
Identity = 383/1083 (35.36%), Postives = 559/1083 (51.62%), Query Frame = 0
Query: 95 YNFKGLRLHLGCQISKESFFV---------LQTELNVSVDFGFDRRVLSFF---ISHS-- 154
Y G+ L +G +S++ FFV L + + F F + F + H+
Sbjct: 130 YKLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVI 189
Query: 155 HVDYMLVLRYENIWQVQLHKPQGQSDVDYLLIQVHPLTFINHTIIIMTCFHYQLFGAPRI 214
+ DY L L +I V+ +K +H I QL +PR+
Sbjct: 190 NCDYKLELLVRDIQTVRQYK------------TLHGFVLI-----------LQLASSPRV 249
Query: 215 YERKSVSFGPILYDPFINFSKEIDTKWFRATDFTPSCCIGQ--SSGLCLEIPYGRQLPNL 274
+ R + +YD + D W R TDFT IG+ S + + Y +L
Sbjct: 250 WYRTA---DDDIYDTVPGDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTA 309
Query: 275 HDKF-AHYFKEIKGRF-TLDRGSTYSSNPNLVPIVRPPRNINLPYAILFKINLLVQNGCL 334
D F +E + R+ R P + + I+F +N ++ G
Sbjct: 310 LDYFRMRRVQEERVRWPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVF 369
Query: 335 PGPALDISFYQMVDPQRNNIGFIDHALNKLYHLKECCYNPSKWLDDEYRKY-----FKAR 394
L F+ ++ Q ++ + L HL C Y + + D Y++ + +
Sbjct: 370 NQFQLTERFFDLLRNQPKDVN-----IASLKHL--CTY--KRPVFDAYKRLKLVQEWIQK 429
Query: 395 NPPQPPIMSLNEGLVYVHRVQVTPCRVYFCGPEVNVSNHVLRDYPEYLDNFLRVSFVDEE 454
NP +E + + R+ +TP R Y PEV +SN VLR Y + FLRV+F+DE
Sbjct: 430 NPKLLGSHEQSEDISEIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDES 489
Query: 455 LDKLYSTELS-------PRESSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQL 514
+ + S LS +SS KT +FKR+ S+L DG + +K+ FLA+S++QL
Sbjct: 490 MQTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQL 549
Query: 515 RENSAWMFAPKDGITAAGIRKWMGDFRSIRNVAKYAARLGQSFGSSTETLSVGRREVEV- 574
R+ SAW FA + I+ WMG F+ +NVAK AAR+G F S+ T+ V EV+
Sbjct: 550 RDRSAWFFAEDGKTRVSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTE 609
Query: 575 IPDIEVESDGVKYVFSDGIGKISASFARKVAQ--KCGIRHTPSAFQIRYAGFKGVISVDP 634
+PDIE YVFSDGIG I+ A +V + K + ++P A+QIRYAGFKGV++ P
Sbjct: 610 VPDIERNG----YVFSDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWP 669
Query: 635 TSS--VKLSLRNSMLKYESTDTKLDVLLWSKSLPCYLNRQLITLLSTLGVEDHVFEKKQK 694
+ S ++L+LR+SM K+ S T L++ W++ P +LNRQ+ITLLS LGV D +F Q+
Sbjct: 670 SKSDGIRLALRDSMKKFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQE 729
Query: 695 ELMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFRQSKL 754
++ +L+ I D+ A + L S E N M+S G++P +EP L ML + R ++L
Sbjct: 730 SMLYKLNRILDDTDVAFEVL-TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQL 789
Query: 755 LELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQC---TAHQQLQDDHIIFKRGKSNRH 814
LR KSRIF+ +GR +MGCLDE G LE+G+ F+Q + FK K++
Sbjct: 790 WGLREKSRIFVTSGRWLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLE 849
Query: 815 FIATGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQKGPRPHPNECSGSDLDGD 874
+ G V +AKNPCLHPGDVR+L AVDVP LHHM DC++FPQKG RPH NE SGSDLDGD
Sbjct: 850 -VVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGD 909
Query: 875 IYFVCWDPDLIPP--QQVESMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAH 934
+YFV WD LIPP + +M Y K L V +++ ++FA + N+ LG I NAH
Sbjct: 910 LYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAH 969
Query: 935 TAFADREPKKAMSKPCIELAKLFSIAVDFPKTGVPALIPANLRVEEYPDFMDKADKVTYQ 994
ADR AM + C+ LA+L + AVDFPKTG +P +L+ + YPDFM K D TY+
Sbjct: 970 VVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYK 1029
Query: 995 SENVLGKLFRMLDEI--EPNIDIRSFTRDVARQAYDPDMEVEGFEEYLDNAIYHKGNYDM 1054
S +LG+L+R + E+ E + D + YD +E+ GFE+ + A HK YD
Sbjct: 1030 SNKILGRLYRRVKEVYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDG 1089
Query: 1055 RLGNLMNYYRIKNEAELISGGSLSRSLSATKKNE--AESIATAVRSLRKEARSWFNE--- 1114
+L L+ Y+++ E E+++G S +KK E + + SL+KE R F E
Sbjct: 1090 QLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIP 1149
Query: 1115 -NAELHFRHGNNVY-ARASAWYFVTYHHSYWGWFDEGKD-----HGHLISFPWCVYDKLV 1124
+ L N +Y +ASAWY VTYH + E +D H ++SF W D L
Sbjct: 1150 DHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLA 1170
BLAST of MS020747 vs. TAIR 10
Match:
AT2G19920.1 (RNA-dependent RNA polymerase family protein )
HSP 1 Score: 117.5 bits (293), Expect = 7.1e-26
Identity = 144/520 (27.69%), Postives = 222/520 (42.69%), Query Frame = 0
Query: 517 AKYAARLGQSFGSSTETLSVGRREVEV--IPDIE---------VESDGVKYVFSDGIGKI 576
A Y AR S T+ L V E+ V I DI ++ +G + SDG G I
Sbjct: 351 ANYMARFSLIL-SKTKKLEVDMTEITVMQIDDIHCHDQSNNDVLDKNGKPRIHSDGTGYI 410
Query: 577 SASFARKV--------------AQKCGIRHTPSAFQIRY----AGFKGVISVD---PTSS 636
S AR Q ++ P QIR + KG+ ++ P +
Sbjct: 411 SEDLARMCPLNIFKGKSMRSNNIQGTCVQEPPLLIQIRMFNDGSAVKGIFLLNKNLPPQT 470
Query: 637 VKLSLRNSMLK-YE-------STDTKLDVLLWSK-SLPCYLNRQLITLLSTLGVEDHVFE 696
V+ +R SM+K Y+ ST L+V+ S L++ L+ LLS GV + F
Sbjct: 471 VQ--VRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAKLSKNLVALLSYGGVPNDFFL 530
Query: 697 KKQKELMDQLDTIFTDSMKAQQALELMSPGEITNVLKEMISCGYRPDSEPFLSMMLLTFR 756
+++ TIF A +A + N L +MI G P EP+L L
Sbjct: 531 DILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNAL-QMIMAGI-PLDEPYLKHYL---- 590
Query: 757 QSKLLELR----RKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHIIFKRG 816
SKLL+L + ++ I +MG +D TG L+ EV + + QD
Sbjct: 591 -SKLLKLEKDDLKAGKLPIDESYYLMGTVDPTGELKEDEV----SGLAKSQD-------- 650
Query: 817 KSNRHFIATGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVD----CVVFPQKGPRPHPNE 876
V+V +NP LH GD+ +L A V SL V V FPQKGPR +E
Sbjct: 651 -----------VLVYRNPGLHFGDIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDE 710
Query: 877 CSGSDLDGDIYFVCWDPDLIP---------PQQVESMDYTPVPSKLLDHDVTMEEVQEYF 936
+G D DGD+YF+ +P L+ S YT L + EE+ + F
Sbjct: 711 IAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIF 770
Query: 937 --ANYMVNDSLGIIANAHTAFADR---------EPKKAMSKPCIELAKLFSIAVDFPKTG 968
+ + +G A++ A DR + K M K ++L ++ A+D PKTG
Sbjct: 771 LKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKKMLKLTDIYYDAIDAPKTG 830
BLAST of MS020747 vs. TAIR 10
Match:
AT2G19930.1 (RNA-dependent RNA polymerase family protein )
HSP 1 Score: 116.3 bits (290), Expect = 1.6e-25
Identity = 127/464 (27.37%), Postives = 207/464 (44.61%), Query Frame = 0
Query: 557 VFSDGIGKISASFAR--------------KVAQKCGIRHTPSAFQIR--YAGF--KGVIS 616
+ SDG G IS AR + Q+ + P Q R Y G+ KG
Sbjct: 397 IHSDGTGYISEDLARMCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFL 456
Query: 617 VDPTSSVK-LSLRNSMLKYE--------STDTKLDVLLWSK-SLPCYLNRQLITLLSTLG 676
++ + + +R SM+K ST L+V+ S L++ L+ LLS G
Sbjct: 457 LNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGG 516
Query: 677 VEDHVFEKKQKELMDQLDTIFTDSMKAQQALELMSPGEITNV-LKEMISCGYRPDSEPFL 736
+ + F +++ +IF + A A ++ GE+ + +MI G P EP L
Sbjct: 517 IPNEFFLDILLNTLEESKSIFYNKRAALNA--ALNYGEMDDQNAAQMILVGI-PLDEPHL 576
Query: 737 SMMLLTFRQSKLLELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCTAHQQLQDDHII 796
L +++ +L + ++ + +MG +D TG L+ EV V I
Sbjct: 577 KNYLSILLKTEKNDL-KAGKLPVTESYYLMGTVDPTGALKEDEVCV-------------I 636
Query: 797 FKRGKSNRHFIATGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVD----CVVFPQKGPRP 856
+ G+ +G V+V +NP LH GD+ +L A V +L V V FPQKGPR
Sbjct: 637 LESGQ------ISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRS 696
Query: 857 HPNECSGSDLDGDIYFVCWDPDLI-------------PPQQVESMDYTPVPSKLLDHDVT 916
+E +G D DGD+YF+ +P+L+ PP + S PS+L ++
Sbjct: 697 LGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNS---GRAPSQLSPEELE 756
Query: 917 MEEVQEYF--ANYMVNDSLGIIANAHTAFADR---------EPKKAMSKPCIELAKLFSI 964
EE+ E F A + ++ +GI A++ DR E K M K +EL ++
Sbjct: 757 -EELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYD 816
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022146790.1 | 0.0e+00 | 96.90 | RNA-dependent RNA polymerase 1-like [Momordica charantia] >XP_022146791.1 RNA-de... | [more] |
| XP_038877934.1 | 0.0e+00 | 82.54 | RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida] >XP_038877936... | [more] |
| XP_023539816.1 | 0.0e+00 | 82.26 | RNA-dependent RNA polymerase 1-like [Cucurbita pepo subsp. pepo] | [more] |
| KAG6599932.1 | 0.0e+00 | 82.26 | RNA-dependent RNA polymerase 1, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
| XP_022943176.1 | 0.0e+00 | 82.08 | RNA-dependent RNA polymerase 1-like [Cucurbita moschata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Q9LQV2 | 0.0e+00 | 60.37 | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1 | [more] |
| Q0DXS3 | 4.6e-264 | 62.24 | Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947... | [more] |
| O82504 | 2.7e-211 | 37.57 | RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1 | [more] |
| Q7XM31 | 1.5e-206 | 37.51 | Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947... | [more] |
| Q8LHH9 | 5.3e-159 | 38.07 | Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica OX=39... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1D0F4 | 0.0e+00 | 96.90 | RNA-dependent RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111015912 PE=3... | [more] |
| A0A6J1FR02 | 0.0e+00 | 82.08 | RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111447986 PE=3 ... | [more] |
| E9NWK7 | 0.0e+00 | 82.01 | RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G239640 PE=2 SV=... | [more] |
| H3K3Y9 | 0.0e+00 | 81.75 | RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1 PE=2 SV=1 | [more] |
| A0A6J1K2Q9 | 0.0e+00 | 81.82 | RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111490531 PE=3 SV... | [more] |
