MS020675 (gene) Bitter gourd (TR) v1

Overview


Name	MS020675
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	zinc finger protein CONSTANS-LIKE 14-like
Location	scaffold375: 2104583 .. 2105497 (+)
RNA-Seq Expression	MS020675
Synteny	MS020675

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTTTAAAAATGGGTTATGGCAGAAGAAGAATCAGAGAGCAGAGAGTCCAGTTTCTTGTGAAAGTAGCATCACCATTGAAGGGATGAGCAGAGCATGTCGGTACAGTCCAGAGGAGAAGAAGGAAAGAATTGAAAGATATAGAACAAAAAGAAACCAGAGGAACTTCAACAAGAAGATTAAGGTAATTCATATTCTTCTTTATCTGCCCCTACTTGGAAATTTTATGGATTAATTCTCTAGAATAATTCACCCCCTTATTGTACCTACATATAATTTCATAGATTCTAGATGCCAACAACTATAGAACTTGTTTTCATTATTGTCATTTATAACTTTCACGTTTAATAATTCAATTATTATTAGTGCATACAGTTTAGAGGATAATATAATGTTTAGGTTGTATGTTTTGCAATTATATTCTTCATTATATGTGGGTACTTGTACTTGTGTGTTATTTCAATTTCATCCTCTTTTTGCTTTTGTCACATCTAGCATTATGAGAAGCTCCAAATCACCCCTTTTATTCGCTCTCTCTCATTTTATTTTAAAGGTTTGAAAGGTCATTTTCTGATATTTTAAAACCATCCCTAAATTGGATTCTAATGATAGGACAATCAATCCTTCCTCTAATCAACATAATTGAATCGAAATTTTGTAGGTATAACTCATTGTTTTCTTAAAGATTCTGGCTGATAATAACTGGGTTTTGTTGCAGTATGCTTGTAGGAAGTCGTTGGCCGACAGTCGACCACGGATCAGAGGAAGATTTGCAAGGTACAACGACGACGTCGTGAAGAATTATCCAGTGCAATGGAGTAGTCATGGGCGAGAGGAGGAGGAAGAAGAAGAGGCAAATGGTGGTGATAATTGGATCAAGTATTTTATGGATGCATATTCTGCGAACCTTATTCCA

mRNA sequence

TTGTTTAAAAATGGGTTATGGCAGAAGAAGAATCAGAGAGCAGAGAGTCCAGTTTCTTGTGAAAGTAGCATCACCATTGAAGGGATGAGCAGAGCATGTCGGTACAGTCCAGAGGAGAAGAAGGAAAGAATTGAAAGATATAGAACAAAAAGAAACCAGAGGAACTTCAACAAGAAGATTAAGTATGCTTGTAGGAAGTCGTTGGCCGACAGTCGACCACGGATCAGAGGAAGATTTGCAAGGTACAACGACGACGTCGTGAAGAATTATCCAGTGCAATGGAGTAGTCATGGGCGAGAGGAGGAGGAAGAAGAAGAGGCAAATGGTGGTGATAATTGGATCAAGTATTTTATGGATGCATATTCTGCGAACCTTATTCCA

Coding sequence (CDS)

TTGTTTAAAAATGGGTTATGGCAGAAGAAGAATCAGAGAGCAGAGAGTCCAGTTTCTTGTGAAAGTAGCATCACCATTGAAGGGATGAGCAGAGCATGTCGGTACAGTCCAGAGGAGAAGAAGGAAAGAATTGAAAGATATAGAACAAAAAGAAACCAGAGGAACTTCAACAAGAAGATTAAGTATGCTTGTAGGAAGTCGTTGGCCGACAGTCGACCACGGATCAGAGGAAGATTTGCAAGGTACAACGACGACGTCGTGAAGAATTATCCAGTGCAATGGAGTAGTCATGGGCGAGAGGAGGAGGAAGAAGAAGAGGCAAATGGTGGTGATAATTGGATCAAGTATTTTATGGATGCATATTCTGCGAACCTTATTCCA

Protein sequence

LFKNGLWQKKNQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNDDVVKNYPVQWSSHGREEEEEEEANGGDNWIKYFMDAYSANLIP

Homology

[Close]

BLAST of MS020675 vs. NCBI nr
Match: XP_022146112.1 (uncharacterized protein LOC111015406 [Momordica charantia])

HSP 1 Score: 237.7 bits (605), Expect = 5.7e-59
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 9   KKNQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRKSL 68
           KKNQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRKSL
Sbjct: 39  KKNQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRKSL 98

Query: 69  ADSRPRIRGRFARYNDDVVKNYPVQWSSHGR-EEEEEEEANGGDNWIKYFMDAYSANLIP 128
           ADSRPRIRGRFARYNDDVVKNYPVQWSSHGR EEEEEEEANGGDNWIKYFMDAYSANLIP
Sbjct: 99  ADSRPRIRGRFARYNDDVVKNYPVQWSSHGREEEEEEEEANGGDNWIKYFMDAYSANLIP 158

[Close]

BLAST of MS020675 vs. NCBI nr
Match: XP_038902180.1 (zinc finger protein CONSTANS-LIKE 5-like [Benincasa hispida])

HSP 1 Score: 218.0 bits (554), Expect = 4.7e-53
Identity = 111/127 (87.40%), Postives = 117/127 (92.13%), Query Frame = 0


Query: 1   LFKNGLWQKKNQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKI 60
           LF  G +Q+ NQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKI
Sbjct: 110 LFPAGDFQRNNQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKI 169

Query: 61  KYACRKSLADSRPRIRGRFARYNDDVVKNYPVQWSSHGREEEEEEEANGGDNWIKYFMDA 120
           KYACRKSLADSRPRIRGRFARYNDDVVKNYP+QW SHG+EEE+E   N GDNWIKYF+DA
Sbjct: 170 KYACRKSLADSRPRIRGRFARYNDDVVKNYPMQW-SHGQEEEQEAN-NCGDNWIKYFIDA 229

Query: 121 YSANLIP 128
           YS NLIP
Sbjct: 230 YSTNLIP 234

[Close]

BLAST of MS020675 vs. NCBI nr
Match: XP_023532290.1 (two-component response regulator-like PRR1 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023532291.1 two-component response regulator-like PRR1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.4 bits (542), Expect = 1.1e-51
Identity = 109/127 (85.83%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 5   GLWQKKNQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYAC 64
           G +Q+ NQRAESPVSCESSI IEGMSRACRYSPEEKKERI+RYR+KRNQRNFNKKIKYAC
Sbjct: 109 GDFQRNNQRAESPVSCESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYAC 168

Query: 65  RKSLADSRPRIRGRFARYNDDVVKNYPVQWSSHGRE----EEEEEEANGGDNWIKYFMDA 124
           RKSLADSRPRIRGRFARYNDDV KNYPVQW SHG+E    EEEEEEAN  DNWIKYF+DA
Sbjct: 169 RKSLADSRPRIRGRFARYNDDVAKNYPVQW-SHGQEEEQGEEEEEEANCDDNWIKYFVDA 228

Query: 125 YSANLIP 128
           YS NLIP
Sbjct: 229 YSTNLIP 234

[Close]

BLAST of MS020675 vs. NCBI nr
Match: KAG6570739.1 (Zinc finger protein CONSTANS-LIKE 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211.5 bits (537), Expect = 4.4e-51
Identity = 107/128 (83.59%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 2   FKNGLWQKKNQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIK 61
           FK   WQ+  QRAESPVSCESSITIEG+SRACRYSPEEKKERIERY++KRNQRNFNKKIK
Sbjct: 145 FKEWGWQRNKQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIK 204

Query: 62  YACRKSLADSRPRIRGRFARYNDDVVKNYPVQWSSHGREEEEEEEA-NGGDNWIKYFMDA 121
           YACRKSLADSRPRIRGRFARYND+V KN P+QWS   +EEEEEEEA NGG+NWIKYF+DA
Sbjct: 205 YACRKSLADSRPRIRGRFARYNDNVAKNCPIQWSHGQKEEEEEEEANNGGENWIKYFIDA 264

Query: 122 Y-SANLIP 128
           Y SANLIP
Sbjct: 265 YSSANLIP 272

[Close]

BLAST of MS020675 vs. NCBI nr
Match: KAG7035439.1 (Zinc finger protein CONSTANS-LIKE 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.1 bits (536), Expect = 5.7e-51
Identity = 108/127 (85.04%), Postives = 114/127 (89.76%), Query Frame = 0


Query: 5   GLWQKKNQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYAC 64
           G +Q+ NQRAESPVSCESSI IEGMSRACRYSPEEKKERI+RYR+KRNQRNFNKKIKYAC
Sbjct: 110 GDFQRNNQRAESPVSCESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYAC 169

Query: 65  RKSLADSRPRIRGRFARYNDDVVKNYPVQWSSHGRE----EEEEEEANGGDNWIKYFMDA 124
           RKSLADSRPRIRGRFARYNDDV KNYP QW SHG+E    EEEEEEAN  DNWIKYF+DA
Sbjct: 170 RKSLADSRPRIRGRFARYNDDVAKNYPEQW-SHGQEEEQGEEEEEEANCDDNWIKYFVDA 229

Query: 125 YSANLIP 128
           YS NLIP
Sbjct: 230 YSTNLIP 235

[Close]

BLAST of MS020675 vs. ExPASy Swiss-Prot
Match: Q9SK53 (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.9e-07
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 32  ACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYND 85
           A + SP E++ R+ RYR KR  R F K I+YA RK+ A+ RPRI+GRFA+  D
Sbjct: 221 AVQLSPAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 273

[Close]

BLAST of MS020675 vs. ExPASy Swiss-Prot
Match: Q940T9 (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.6e-06
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 28  GMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYND 85
           G  RA   +  E++ R+ RYR KR  R F K I+YA RK+ A+ RPRI+GRFA+  D
Sbjct: 283 GTQRAVPLTSAEREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD 339

[Close]

BLAST of MS020675 vs. ExPASy Swiss-Prot
Match: Q9FHH8 (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 2.6e-06
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 22  SSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRKSLADSRPRIRGRFAR 81
           S+IT        + S  +++ R+ RYR KR  R F K I+YA RK+ A+SRPRI+GRFA+
Sbjct: 267 STITSSTTGGDHQASSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAK 326

Query: 82  ----YNDDVVKNYPVQWSSHGR 100
                NDD+  ++    ++H +
Sbjct: 327 RTETENDDIFLSHVYASAAHAQ 348

[Close]

BLAST of MS020675 vs. ExPASy Swiss-Prot
Match: Q9LKL2 (Two-component response regulator-like APRR1 OS=Arabidopsis thaliana OX=3702 GN=APRR1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.4e-06
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 38  EEKKERIERYRTKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNDDV---VKNYP--V 97
           + ++E + ++R KRNQR F+KKI+Y  RK LA+ RPR++G+F R  + V   +   P   
Sbjct: 531 DRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNVDLNGQPDSA 590

Query: 98  QWSSHGREEEEEEEAN 109
            +     EEEEEEE N
Sbjct: 591 DYDDEEEEEEEEEEEN 606

[Close]

BLAST of MS020675 vs. ExPASy Swiss-Prot
Match: O50055 (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.8e-06
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 36  SPEEKKERIERYRTKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYND 85
           SP +++ R+ RYR K+  R F K I+YA RK+ A+ RPRI+GRFA+  D
Sbjct: 282 SPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKD 330

[Close]

BLAST of MS020675 vs. ExPASy TrEMBL
Match: A0A6J1CYP0 (uncharacterized protein LOC111015406 OS=Momordica charantia OX=3673 GN=LOC111015406 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.8e-59
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 9   KKNQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRKSL 68
           KKNQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRKSL
Sbjct: 39  KKNQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRKSL 98

Query: 69  ADSRPRIRGRFARYNDDVVKNYPVQWSSHGR-EEEEEEEANGGDNWIKYFMDAYSANLIP 128
           ADSRPRIRGRFARYNDDVVKNYPVQWSSHGR EEEEEEEANGGDNWIKYFMDAYSANLIP
Sbjct: 99  ADSRPRIRGRFARYNDDVVKNYPVQWSSHGREEEEEEEEANGGDNWIKYFMDAYSANLIP 158

[Close]

BLAST of MS020675 vs. ExPASy TrEMBL
Match: A0A6J1JHZ7 (uncharacterized protein LOC111484524 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484524 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.8e-51
Identity = 106/128 (82.81%), Postives = 117/128 (91.41%), Query Frame = 0


Query: 2   FKNGLWQKKNQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIK 61
           FK   WQ+  QRAESPVSCESSITIEG+SRACRYSPEEKKERIERY++KRNQRNFNKKIK
Sbjct: 112 FKEWGWQRNKQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIK 171

Query: 62  YACRKSLADSRPRIRGRFARYNDDVVKNYPVQWSSHGREEEEEEEA-NGGDNWIKYFMDA 121
           YACRKSLADSRPRIRGRFARYND+V KN+P++WS   +EEEEEEEA NGG+NWIKYF+DA
Sbjct: 172 YACRKSLADSRPRIRGRFARYNDNVAKNFPMKWSHGQKEEEEEEEANNGGENWIKYFIDA 231

Query: 122 Y-SANLIP 128
           Y SANLIP
Sbjct: 232 YSSANLIP 239

[Close]

BLAST of MS020675 vs. ExPASy TrEMBL
Match: A0A6J1FXW4 (uncharacterized protein LOC111448769 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448769 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.6e-51
Identity = 107/128 (83.59%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 2   FKNGLWQKKNQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIK 61
           FK   WQ+  QRAESPVSCESSITIEG+SRACRYSPEEKKERIERY++KRNQRNFNKKIK
Sbjct: 112 FKEWGWQRNKQRAESPVSCESSITIEGLSRACRYSPEEKKERIERYKSKRNQRNFNKKIK 171

Query: 62  YACRKSLADSRPRIRGRFARYNDDVVKNYPVQWSSHGREEEEEEEA-NGGDNWIKYFMDA 121
           YACRKSLADSRPRIRGRFARYND+V KN P+QWS   +EEEEEEEA NGG+NWIKYF+DA
Sbjct: 172 YACRKSLADSRPRIRGRFARYNDNVAKNCPMQWSHGQKEEEEEEEANNGGENWIKYFIDA 231

Query: 122 Y-SANLIP 128
           Y SANLIP
Sbjct: 232 YSSANLIP 239

[Close]

BLAST of MS020675 vs. ExPASy TrEMBL
Match: A0A6J1L4M8 (two-component response regulator-like PRR1 OS=Cucurbita maxima OX=3661 GN=LOC111499858 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.0e-50
Identity = 107/126 (84.92%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 5   GLWQKKNQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYAC 64
           G +Q+ NQRAESPVSCESSI I+GMSRACRYSPEEKKERI+RYR+KRNQRNFNKKIKYAC
Sbjct: 107 GDFQRNNQRAESPVSCESSIAIDGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYAC 166

Query: 65  RKSLADSRPRIRGRFARYNDDVVKNYPVQWSSHGREE---EEEEEANGGDNWIKYFMDAY 124
           RKSLADSRPRIRGRFARYN DV KNYPVQW SHG+EE   EEEEEAN  DNWIKYF+DAY
Sbjct: 167 RKSLADSRPRIRGRFARYNYDVAKNYPVQW-SHGQEEEQGEEEEEANCDDNWIKYFVDAY 226

Query: 125 SANLIP 128
           S NLIP
Sbjct: 227 STNLIP 231

[Close]

BLAST of MS020675 vs. ExPASy TrEMBL
Match: A0A6J1G5H7 (zinc finger protein CONSTANS-LIKE 14-like OS=Cucurbita moschata OX=3662 GN=LOC111450985 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.0e-50
Identity = 106/125 (84.80%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 7   WQKKNQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRK 66
           +Q+ NQRAESPVSCESSI IEGMSRACRYSPEEKKERI+RYR+KRNQRNFNKKIKYACRK
Sbjct: 108 FQRNNQRAESPVSCESSIAIEGMSRACRYSPEEKKERIQRYRSKRNQRNFNKKIKYACRK 167

Query: 67  SLADSRPRIRGRFARYNDDVVKNYPVQWSSHGRE----EEEEEEANGGDNWIKYFMDAYS 126
           SLADSRPRIRGRFA+YNDDV KNYP QW SHG+E    EEEEEEAN  DNWIKYF+DAYS
Sbjct: 168 SLADSRPRIRGRFAKYNDDVAKNYPEQW-SHGQEEEQGEEEEEEANCDDNWIKYFVDAYS 227

Query: 127 ANLIP 128
            NLIP
Sbjct: 228 TNLIP 231

[Close]

BLAST of MS020675 vs. TAIR 10
Match: AT5G59990.1 (CCT motif family protein )

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-23
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 0


Query: 9   KKNQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRKSL 68
           + ++R  S V  ES+  IEGMS+A +YSPEEKKE+IE+YR+KRN RNFNK+IKY CRK+L
Sbjct: 132 RSSRRESSTVWSESNAIIEGMSKAYKYSPEEKKEKIEKYRSKRNLRNFNKRIKYECRKTL 191

Query: 69  ADSRPRIRGRFARYNDDVVKNYPVQWSSHGREEEEEEEANGGDNWIKYFMDAYSAN 125
           ADSRPRIRGRFAR ND++        S   + +  E      D W   F+D++SAN
Sbjct: 192 ADSRPRIRGRFAR-NDEI--------SQQEQVDVMEAVVGDVDTWAS-FLDSFSAN 237

[Close]

BLAST of MS020675 vs. TAIR 10
Match: AT1G63820.1 (CCT motif family protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-17
Identity = 53/95 (55.79%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 16  SPVSCESSITI-----EGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRKSLAD 75
           SP++ ESS T      E   R  RYS EE+KE+I +YR KR QRNF K IKYACRK+LAD
Sbjct: 163 SPLAAESSPTTVFSGDEQSLRVGRYSSEERKEKISKYRAKRTQRNFTKTIKYACRKTLAD 222

Query: 76  SRPRIRGRFARYNDDVVKNYPVQWSSHGREEEEEE 106
           +RPR+RGRFAR ND+V +N P   SS  R+E +++
Sbjct: 223 NRPRVRGRFAR-NDEVFEN-PKIASSFTRQENDDD 255

[Close]

BLAST of MS020675 vs. TAIR 10
Match: AT5G41380.1 (CCT motif family protein )

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-17
Identity = 52/103 (50.49%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 8   QKKNQRAESPVSCESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRKS 67
           Q+ ++ +  P S E +  +       RYS EE+KE+I +YR KRNQRNF K IKYACRK+
Sbjct: 189 QRSSENSTMPFSEEQNFKVG------RYSAEERKEKISKYRAKRNQRNFTKTIKYACRKT 248

Query: 68  LADSRPRIRGRFARYNDDVVKNYPVQ------WSSHGREEEEE 105
           LADSRPRIRGRFAR ND+VV+   ++      W   G  E+EE
Sbjct: 249 LADSRPRIRGRFAR-NDEVVEIPNIEDDDSELWKLDGLHEKEE 284

[Close]

BLAST of MS020675 vs. TAIR 10
Match: AT3G12890.1 (activator of spomin::LUC2 )

HSP 1 Score: 84.7 bits (208), Expect = 5.7e-17
Identity = 53/118 (44.92%), Postives = 67/118 (56.78%), Query Frame = 0


Query: 21  ESSITIEGMSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRKSLADSRPRIRGRFA 80
           E  I  E  ++  RYS EE+K+RI RY  K+NQRNFNK IKY CRK+LAD R R+RGRFA
Sbjct: 120 EGGIQAEPNTKVGRYSVEERKDRIMRYLKKKNQRNFNKTIKYVCRKTLADRRVRVRGRFA 179

Query: 81  RYNDDVVKNYPVQWSSHGREEEEEEEANGG-----------DNWIKYFMDAYSANLIP 128
           R N+D  +  P    +H    E+EE+   G           D W+   M    +NLIP
Sbjct: 180 R-NNDTCEEQPHMSKNHNNHSEKEEDMFSGSDDYLIQMEHDDGWLHEAM----SNLIP 232

[Close]

BLAST of MS020675 vs. TAIR 10
Match: AT2G33350.1 (CCT motif family protein )

HSP 1 Score: 84.0 bits (206), Expect = 9.8e-17
Identity = 43/77 (55.84%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 29  MSRACRYSPEEKKERIERYRTKRNQRNFNKKIKYACRKSLADSRPRIRGRFARYNDDVVK 88
           +++  + SPE++KE+I RY  KRN+RNFNKKIKYACRK+LADSRPR+RGRFA+ ND+  +
Sbjct: 300 LNKVGKLSPEQRKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAK-NDEFGE 359

Query: 89  NYPVQWSSHGREEEEEE 106
                +SSH  +E+E++
Sbjct: 360 PNRQAFSSHHDDEDEDD 375

The following BLAST results are available for this feature:

BLAST of MS020675 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146112.1	5.7e-59	99.17	uncharacterized protein LOC111015406 [Momordica charantia]	[more]
XP_038902180.1	4.7e-53	87.40	zinc finger protein CONSTANS-LIKE 5-like [Benincasa hispida]	[more]
XP_023532290.1	1.1e-51	85.83	two-component response regulator-like PRR1 isoform X1 [Cucurbita pepo subsp. pep...	[more]
KAG6570739.1	4.4e-51	83.59	Zinc finger protein CONSTANS-LIKE 3, partial [Cucurbita argyrosperma subsp. soro...	[more]
KAG7035439.1	5.7e-51	85.04	Zinc finger protein CONSTANS-LIKE 3, partial [Cucurbita argyrosperma subsp. argy...	[more]

BLAST of MS020675 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SK53	8.9e-07	52.83	Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1...	[more]
Q940T9	2.6e-06	49.12	Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2...	[more]
Q9FHH8	2.6e-06	39.02	Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2...	[more]
Q9LKL2	4.4e-06	42.11	Two-component response regulator-like APRR1 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
O50055	5.8e-06	51.02	Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1...	[more]

BLAST of MS020675 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYP0	2.8e-59	99.17	uncharacterized protein LOC111015406 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1JHZ7	2.8e-51	82.81	uncharacterized protein LOC111484524 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FXW4	3.6e-51	83.59	uncharacterized protein LOC111448769 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1L4M8	1.0e-50	84.92	two-component response regulator-like PRR1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1G5H7	1.0e-50	84.80	zinc finger protein CONSTANS-LIKE 14-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of MS020675 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59990.1	1.8e-23	53.45	CCT motif family protein	[more]
AT1G63820.1	1.5e-17	55.79	CCT motif family protein	[more]
AT5G41380.1	2.6e-17	50.49	CCT motif family protein	[more]
AT3G12890.1	5.7e-17	44.92	activator of spomin::LUC2	[more]
AT2G33350.1	9.8e-17	55.84	CCT motif family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 41..81 e-value: 9.2E-18 score: 64.1
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 40..82 score: 15.417831
None	No IPR available	PANTHER	PTHR31319:SF76	CCT MOTIF PROTEIN	coord: 4..124
None	No IPR available	PANTHER	PTHR31319	ZINC FINGER PROTEIN CONSTANS-LIKE 4	coord: 4..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020675.1	MS020675.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding