MS020602 (gene) Bitter gourd (TR) v1

Overview
NameMS020602
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransmembrane protein
Locationscaffold375: 1570109 .. 1570402 (+)
RNA-Seq ExpressionMS020602
SyntenyMS020602
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTATTGCTATGGATGTACTCCCCGCCCTTCCGCTCCTCTGCCGTATCCTATCCTCGTTCTTCTCGCCGTAGTCTCCATCTTGATCGGATTGTCCTCCCTTTTCCCCTCCGAGGGCATCGACTTCTCCGAATTCCAAATCAATTGGCCTCTTCTCGCTGTGCCGGTAACTATTCTTGTTCTCGTTCGCTGCTTGTCGTCCATGGATTCTTCCTCTTCCAGGTACTATGGCTGCGCTTGTAATCGGGGGGGCTGGAAGACGACGCACTGTCGGTGCGGCCATGGCTCCTGG

mRNA sequence

ATGACTTATTGCTATGGATGTACTCCCCGCCCTTCCGCTCCTCTGCCGTATCCTATCCTCGTTCTTCTCGCCGTAGTCTCCATCTTGATCGGATTGTCCTCCCTTTTCCCCTCCGAGGGCATCGACTTCTCCGAATTCCAAATCAATTGGCCTCTTCTCGCTGTGCCGGTAACTATTCTTGTTCTCGTTCGCTGCTTGTCGTCCATGGATTCTTCCTCTTCCAGGTACTATGGCTGCGCTTGTAATCGGGGGGGCTGGAAGACGACGCACTGTCGGTGCGGCCATGGCTCCTGG

Coding sequence (CDS)

ATGACTTATTGCTATGGATGTACTCCCCGCCCTTCCGCTCCTCTGCCGTATCCTATCCTCGTTCTTCTCGCCGTAGTCTCCATCTTGATCGGATTGTCCTCCCTTTTCCCCTCCGAGGGCATCGACTTCTCCGAATTCCAAATCAATTGGCCTCTTCTCGCTGTGCCGGTAACTATTCTTGTTCTCGTTCGCTGCTTGTCGTCCATGGATTCTTCCTCTTCCAGGTACTATGGCTGCGCTTGTAATCGGGGGGGCTGGAAGACGACGCACTGTCGGTGCGGCCATGGCTCCTGG

Protein sequence

MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTILVLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGSW
Homology
BLAST of MS020602 vs. NCBI nr
Match: KAG6571042.1 (hypothetical protein SDJN03_29957, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.5 bits (389), Expect = 4.9e-34
Identity = 77/98 (78.57%), Postives = 84/98 (85.71%), Query Frame = 0

Query: 1  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTIL 60
          MTYCYGC PRPS PLP P+L+LLAVV ILIGLSSLFPSE IDFSEFQINWPLLAVP+ +L
Sbjct: 1  MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60

Query: 61 VLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGSW 99
          VLVRCLS++D SSSRYY C CNR GWK   CRCG G+W
Sbjct: 61 VLVRCLSTVD-SSSRYYACPCNR-GWK-MQCRCGRGAW 95

BLAST of MS020602 vs. NCBI nr
Match: KAA0045689.1 (hypothetical protein E6C27_scaffold243G002050 [Cucumis melo var. makuwa] >TYJ99593.1 hypothetical protein E5676_scaffold123G001670 [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 4.9e-34
Identity = 80/97 (82.47%), Postives = 83/97 (85.57%), Query Frame = 0

Query: 1  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTIL 60
          MTYCYGC PRPS PLP PIL+LLAVV ILI LSSLFPSE IDFSEFQINWPLLAVP+ IL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGS 98
          VLVRCLSSMD SS RYY C CNR GWK  +CRCGHGS
Sbjct: 61 VLVRCLSSMD-SSPRYYACPCNR-GWK-MNCRCGHGS 94

BLAST of MS020602 vs. NCBI nr
Match: KGN61893.1 (hypothetical protein Csa_006600 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 5.4e-33
Identity = 78/97 (80.41%), Postives = 82/97 (84.54%), Query Frame = 0

Query: 1  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTIL 60
          MTYCYGC PRPS PLP PIL+LLAVV ILI LSSLFPSE IDFSEFQINWPLLAVP+ IL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGS 98
          VLVRCL+SMD SS RYY C C+R GWK  HCRCG GS
Sbjct: 61 VLVRCLASMD-SSPRYYACPCDR-GWK-MHCRCGRGS 94

BLAST of MS020602 vs. NCBI nr
Match: KAG6605007.1 (hypothetical protein SDJN03_02324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.5 bits (345), Expect = 6.2e-29
Identity = 74/98 (75.51%), Postives = 78/98 (79.59%), Query Frame = 0

Query: 1  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTIL 60
          MTYCYG  P PS PLP PILVLL VV ILIGLSSLF SE IDFSEFQINWPLLAVP+ IL
Sbjct: 1  MTYCYGYKPHPSGPLPGPILVLLTVVFILIGLSSLFSSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGSW 99
          VLVR LSS+DSSS     CAC+R GWK  HCRC HG+W
Sbjct: 61 VLVRFLSSVDSSSRH---CACDR-GWK-MHCRCRHGAW 93

BLAST of MS020602 vs. NCBI nr
Match: KMT01460.1 (hypothetical protein BVRB_9g214670 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07
Identity = 39/91 (42.86%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 4   CYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPS-EGIDFSEFQINWPLLAVPVTILVL 63
           C G T R   PLPYP+L++L VVSI +G+   F S E  + +EF INW LL  P+ ++  
Sbjct: 17  CDGLTLR---PLPYPVLLILLVVSIFLGIKFYFVSDEAAETTEFHINWMLLLTPILLIFA 76

Query: 64  VRCLSSMDSSSSRYYGCACNRGGWKTTHCRC 94
           VR LSS      R YG  C    W    C C
Sbjct: 77  VRLLSSFQGRRRRSYG-GCTTERWPPVSCCC 103

BLAST of MS020602 vs. ExPASy TrEMBL
Match: A0A5D3BJW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001670 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.4e-34
Identity = 80/97 (82.47%), Postives = 83/97 (85.57%), Query Frame = 0

Query: 1  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTIL 60
          MTYCYGC PRPS PLP PIL+LLAVV ILI LSSLFPSE IDFSEFQINWPLLAVP+ IL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGS 98
          VLVRCLSSMD SS RYY C CNR GWK  +CRCGHGS
Sbjct: 61 VLVRCLSSMD-SSPRYYACPCNR-GWK-MNCRCGHGS 94

BLAST of MS020602 vs. ExPASy TrEMBL
Match: A0A0A0LJB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263880 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.6e-33
Identity = 78/97 (80.41%), Postives = 82/97 (84.54%), Query Frame = 0

Query: 1  MTYCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSEGIDFSEFQINWPLLAVPVTIL 60
          MTYCYGC PRPS PLP PIL+LLAVV ILI LSSLFPSE IDFSEFQINWPLLAVP+ IL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSMDSSSSRYYGCACNRGGWKTTHCRCGHGS 98
          VLVRCL+SMD SS RYY C C+R GWK  HCRCG GS
Sbjct: 61 VLVRCLASMD-SSPRYYACPCDR-GWK-MHCRCGRGS 94

BLAST of MS020602 vs. ExPASy TrEMBL
Match: A0A1R3JDI7 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17251 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.9e-07
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 3  YCYGCTPRPSAPLPYPILVLLAVVSILIGLSSLFPSE-GIDFSEFQINWPLLAVPVTILV 62
          YC  C  RPS+P+PY +L+ LA+  +L+ LSSL   E  ++ +E  + W +L   + +LV
Sbjct: 10 YCGRCHRRPSSPMPYSVLLFLALALMLLALSSLIKFEIVLESAEDSMTWLVLLAVLALLV 69

Query: 63 LVRCLSSMDSSSSRYYGCACNR 84
          +VRCLSS DS    +Y C C R
Sbjct: 70 VVRCLSSTDSCRQPHY-CGCGR 90

BLAST of MS020602 vs. ExPASy TrEMBL
Match: A0A2C9UZU5 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G089800 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-07
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 0

Query: 14  PLPYPILVLLAVVSILIGLSSLFPSEGI-DFSEFQINWPLLAVPVTILVLVRCLSSMDSS 73
           PLPYP+L++LAV+SI +G+S  F  E I + +E QINW LLA P+ +L LVR LSSM++S
Sbjct: 21  PLPYPVLLILAVISIFLGISWYFSYEEIAETAEMQINWLLLATPLVLLFLVRWLSSMENS 80

Query: 74  SSRYYGCACNRGGWK-TTHCRCGHGS 98
              +   A +   WK  TH R   GS
Sbjct: 81  DMLF---AKSPWEWKRRTHHRPPEGS 103

BLAST of MS020602 vs. ExPASy TrEMBL
Match: A0A6J1C2N0 (uncharacterized protein LOC111007895 OS=Momordica charantia OX=3673 GN=LOC111007895 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.5e-07
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 14 PLPYPILVLLAVVSILIGLSSLFPSE-GIDFSEFQINWPLLAVPVTILVLVRCLSSMDSS 73
          PLPYP+L+LL VV + +G S  F  E  ++ +E QINW L A PV ++VLVRCLSS+D S
Sbjct: 20 PLPYPVLLLLGVVFVFLGASWWFSYESAVEAAEEQINWLLFATPVLLIVLVRCLSSVDPS 79

BLAST of MS020602 vs. TAIR 10
Match: AT2G21180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 3.2e-07
Identity = 30/61 (49.18%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 13 APLPYPILVLLAVVSILIGLSSLFPS--EGIDFSEFQINWPLLAVPVTILVLVRCLSSMD 72
          +PLPYP+L++LAV S+ + LSS + S  E  + +E QIN+ LL +P+ ++VLVR LSSM+
Sbjct: 17 SPLPYPVLLILAVASVFL-LSSWYFSLEEAAESAEEQINFALLLIPLFLIVLVRWLSSME 76

BLAST of MS020602 vs. TAIR 10
Match: AT2G21185.1 (unknown protein; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 2.1e-06
Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = 0

Query: 16 PYPILVLLAVVSILIGLSSLFPSE-GIDFSEFQINWPLL-AVPVTILVLVRCLSSMDSSS 75
          P P++V++ V  +L+ LSS+   E  +   E  ++W LL AVP+ +L  VRCLS +++S 
Sbjct: 17 PLPVIVMITVALVLLALSSVVKFEVAVSSGEDVLSWLLLAAVPLALLFAVRCLSCLETSK 76

Query: 76 SRYYGCACNRGGWKTTHCRC 94
             Y C C R  W+   C C
Sbjct: 77 RSTYYCPCGR--WR---CVC 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6571042.14.9e-3478.57hypothetical protein SDJN03_29957, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0045689.14.9e-3482.47hypothetical protein E6C27_scaffold243G002050 [Cucumis melo var. makuwa] >TYJ995... [more]
KGN61893.15.4e-3380.41hypothetical protein Csa_006600 [Cucumis sativus][more]
KAG6605007.16.2e-2975.51hypothetical protein SDJN03_02324, partial [Cucurbita argyrosperma subsp. sorori... [more]
KMT01460.11.7e-0742.86hypothetical protein BVRB_9g214670 [Beta vulgaris subsp. vulgaris][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BJW12.4e-3482.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LJB62.6e-3380.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263880 PE=4 SV=1[more]
A0A1R3JDI71.9e-0742.68Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17251 PE=4 SV=1[more]
A0A2C9UZU52.5e-0748.84Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G089800 PE=4 SV=... [more]
A0A6J1C2N05.5e-0755.00uncharacterized protein LOC111007895 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
Match NameE-valueIdentityDescription
AT2G21180.13.2e-0749.18unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G21185.12.1e-0637.50unknown protein; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacter... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33306:SF32SUBFAMILY NOT NAMEDcoord: 1..97
NoneNo IPR availablePANTHERPTHR33306EXPRESSED PROTEIN-RELATED-RELATEDcoord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS020602.1MS020602.1mRNA