MS020594 (gene) Bitter gourd (TR) v1

Overview


Name	MS020594
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S12
Location	scaffold375: 1495192 .. 1496300 (-)
RNA-Seq Expression	MS020594
Synteny	MS020594

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGCAGTGATGAAGGTGCAGTTGTGGCTGAGGCTCCCGCCCCAGCTCTTGGTGAGCCTATGGACATCGAGACGGCTTTGCAACTTGTTCTTAGGAAATCATTAGCCCATGGTGGACTTGTTAGAGGCCTACATGAGAGCGCTAAAGCAATTGAGAAGCATGCTGCTCAGCTATGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTAAAATTAGTGAAGGCACTTTGTGGGGAGCACAACGTCAGCTTGATGACAGTTCCAAGTGCAAAGACTCTTGGCGAGTGGGCCGGTGTAAGTGATTTTTTTAACAAGATATAGAACTTTTCATTGATAAATGATAATAAACAAAAATGTTTAAAAGATATGAACTCCGGGAGGAGTAAAAAGAGGAAAAAAACGGAAAGCATAGTAAAGCTAGGCTGGACTAGAGATATAAAAACATCCCAATTAATACAAATACCATTGTAGATAGCAAACTAACTCCAATGTAAATTTTAAGCATGTTTATTGAGATTAAATGGTTTATCTTATCCTTTGCTTTTTTCCCATCATCTCTGGCATCACTATATAAATATACCATAGTTATTCTACCATGATTGAACCTATGACTTTTGACGTTTAGTTAGTGTTTTATATGCTCGAGATCATATAAAGATGATCTCGAGCATGTAAAATGCATAGAAATCTTCATTTTCCTCCTAACATGTCTTGCTATCAATACCATTGTGAAAGTTTGTTATTGCCTCTAATATTTGCATTCTACACCATCTGTTGAGTTCGATAACAAGGTGTGATTAATATACATATAACAATATTACTTGCAAAAGATTGCTCATATGGAGTTCAAAGTTAAGTAATTTTCTTTGTATTCGGTATAATGCAGCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTTGGGTGTTCTTGTGTTGTAGTTAAGGTACGCTTATGATCACTTCTAGAGAAAATGTTCTATTCCTTTTTTGTTTGCAAAATGTCGTTTTTGTTTACTTTAATTTTGAATGTGTTATTCCCAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTTAGTTCAAGT

mRNA sequence

GTTTGCAGTGATGAAGGTGCAGTTGTGGCTGAGGCTCCCGCCCCAGCTCTTGGTGAGCCTATGGACATCGAGACGGCTTTGCAACTTGTTCTTAGGAAATCATTAGCCCATGGTGGACTTGTTAGAGGCCTACATGAGAGCGCTAAAGCAATTGAGAAGCATGCTGCTCAGCTATGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTAAAATTAGTGAAGGCACTTTGTGGGGAGCACAACGTCAGCTTGATGACAGTTCCAAGTGCAAAGACTCTTGGCGAGTGGGCCGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTTGGGTGTTCTTGTGTTGTAGTTAAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTTAGTTCAAGT

Coding sequence (CDS)

GTTTGCAGTGATGAAGGTGCAGTTGTGGCTGAGGCTCCCGCCCCAGCTCTTGGTGAGCCTATGGACATCGAGACGGCTTTGCAACTTGTTCTTAGGAAATCATTAGCCCATGGTGGACTTGTTAGAGGCCTACATGAGAGCGCTAAAGCAATTGAGAAGCATGCTGCTCAGCTATGCGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTAAAATTAGTGAAGGCACTTTGTGGGGAGCACAACGTCAGCTTGATGACAGTTCCAAGTGCAAAGACTCTTGGCGAGTGGGCCGGTCTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTGTTGGGTGTTCTTGTGTTGTAGTTAAGGACTTTGGGGAGGATCACGAGGCACTTCACATTGTCCAGAAGCACGTTAGTTCAAGT

Protein sequence

VCSDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSS

Homology

[Close]

BLAST of MS020594 vs. NCBI nr
Match: XP_022146157.1 (40S ribosomal protein S12-like [Momordica charantia])

HSP 1 Score: 275.8 bits (704), Expect = 2.1e-70
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 4   DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63
           DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 64  DCNQPDYVKLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123
           DCNQPDYVKLVKALCGEH+VSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 124 GEDHEALHIVQKHVSSS 141
           GEDHEALHIVQKHVSSS
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]

BLAST of MS020594 vs. NCBI nr
Match: XP_004147008.1 (40S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribosomal protein S12-like [Cucumis melo] >XP_031736838.1 40S ribosomal protein S12 [Cucumis sativus] >KAA0045670.1 40S ribosomal protein S12 [Cucumis melo var. makuwa] >KGN61872.1 hypothetical protein Csa_006022 [Cucumis sativus] >TYJ99613.1 40S ribosomal protein S12 [Cucumis melo var. makuwa])

HSP 1 Score: 273.5 bits (698), Expect = 1.0e-69
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 3   SDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62
           +DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG
Sbjct: 3   ADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62

Query: 63  EDCNQPDYVKLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122
           EDCNQPDYVKLVKALC EHNV+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD
Sbjct: 63  EDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122

Query: 123 FGEDHEALHIVQKHVSSS 141
           FGEDHEALHIVQKHVSS+
Sbjct: 123 FGEDHEALHIVQKHVSSN 140

[Close]

BLAST of MS020594 vs. NCBI nr
Match: XP_023512603.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.1 bits (697), Expect = 1.3e-69
Identity = 134/138 (97.10%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 3   SDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62
           +DEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG
Sbjct: 3   ADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62

Query: 63  EDCNQPDYVKLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122
           EDCNQPDYVKLVKALC EHNV+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD
Sbjct: 63  EDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122

Query: 123 FGEDHEALHIVQKHVSSS 141
           FGEDHEALHIVQKHVSSS
Sbjct: 123 FGEDHEALHIVQKHVSSS 140

[Close]

BLAST of MS020594 vs. NCBI nr
Match: KAG6571063.1 (40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 273.1 bits (697), Expect = 1.3e-69
Identity = 134/138 (97.10%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 3   SDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62
           +DEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG
Sbjct: 50  ADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 109

Query: 63  EDCNQPDYVKLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122
           EDCNQPDYVKLVKALC EHNV+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD
Sbjct: 110 EDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 169

Query: 123 FGEDHEALHIVQKHVSSS 141
           FGEDHEALHIVQKHVSSS
Sbjct: 170 FGEDHEALHIVQKHVSSS 187

[Close]

BLAST of MS020594 vs. NCBI nr
Match: XP_022986724.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 134/138 (97.10%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 3   SDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62
           +DEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG
Sbjct: 3   ADEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62

Query: 63  EDCNQPDYVKLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122
           EDCNQPDYVKLVKALC EHNV+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD
Sbjct: 63  EDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122

Query: 123 FGEDHEALHIVQKHVSSS 141
           FGEDHEALHIVQKHVSSS
Sbjct: 123 FGEDHEALHIVQKHVSSS 140

[Close]

BLAST of MS020594 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.6e-55
Identity = 102/129 (79.07%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 11  EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDY 70
           EAP P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC+QPDY
Sbjct: 14  EAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDY 73

Query: 71  VKLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEAL 130
           VKLVKALC EHNV L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GE+ E L
Sbjct: 74  VKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGL 133

Query: 131 HIVQKHVSS 140
           +IVQ++V S
Sbjct: 134 NIVQQYVKS 142

[Close]

BLAST of MS020594 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.5e-50
Identity = 94/129 (72.87%), Postives = 111/129 (86.05%), Query Frame = 0


Query: 12  APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 71
           A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYV
Sbjct: 16  AEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYV 75

Query: 72  KLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 131
           KLVKALC +H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 132 IVQKHVSSS 141
           IV+KH+ S+
Sbjct: 136 IVKKHLDSN 144

[Close]

BLAST of MS020594 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.8e-48
Identity = 98/140 (70.00%), Postives = 110/140 (78.57%), Query Frame = 0


Query: 4   DEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 63
           DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL 
Sbjct: 4   DEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLV 63

Query: 64  VLGEDCNQPDYVKLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV 123
           VL EDCNQPDYVKLVKALC +H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V
Sbjct: 64  VLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLV 123

Query: 124 VKDFGEDHEALHIVQKHVSS 140
           VKDFGE+  AL IV KH++S
Sbjct: 124 VKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of MS020594 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.5e-36
Identity = 69/121 (57.02%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALC EH ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

[Close]

BLAST of MS020594 vs. ExPASy Swiss-Prot
Match: P25398 (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3)

HSP 1 Score: 152.1 bits (383), Expect = 4.5e-36
Identity = 69/121 (57.02%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 135
           ALC EH ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 136 H 137
           +
Sbjct: 127 Y 127

[Close]

BLAST of MS020594 vs. ExPASy TrEMBL
Match: A0A6J1CYT4 (40S ribosomal protein S12 OS=Momordica charantia OX=3673 GN=LOC111015439 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.0e-70
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 4   DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63
           DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 64  DCNQPDYVKLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123
           DCNQPDYVKLVKALCGEH+VSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCGEHHVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 124 GEDHEALHIVQKHVSSS 141
           GEDHEALHIVQKHVSSS
Sbjct: 124 GEDHEALHIVQKHVSSS 140

[Close]

BLAST of MS020594 vs. ExPASy TrEMBL
Match: A0A5D3BJY5 (40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001870 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.0e-70
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 3   SDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62
           +DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG
Sbjct: 3   ADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62

Query: 63  EDCNQPDYVKLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122
           EDCNQPDYVKLVKALC EHNV+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD
Sbjct: 63  EDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122

Query: 123 FGEDHEALHIVQKHVSSS 141
           FGEDHEALHIVQKHVSS+
Sbjct: 123 FGEDHEALHIVQKHVSSN 140

[Close]

BLAST of MS020594 vs. ExPASy TrEMBL
Match: A0A0A0LM61 (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.0e-70
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 3   SDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62
           +DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG
Sbjct: 3   ADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62

Query: 63  EDCNQPDYVKLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122
           EDCNQPDYVKLVKALC EHNV+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD
Sbjct: 63  EDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122

Query: 123 FGEDHEALHIVQKHVSSS 141
           FGEDHEALHIVQKHVSS+
Sbjct: 123 FGEDHEALHIVQKHVSSN 140

[Close]

BLAST of MS020594 vs. ExPASy TrEMBL
Match: A0A1S3C6L3 (40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103497279 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 5.0e-70
Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 3   SDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62
           +DEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG
Sbjct: 3   ADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62

Query: 63  EDCNQPDYVKLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122
           EDCNQPDYVKLVKALC EHNV+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD
Sbjct: 63  EDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122

Query: 123 FGEDHEALHIVQKHVSSS 141
           FGEDHEALHIVQKHVSS+
Sbjct: 123 FGEDHEALHIVQKHVSSN 140

[Close]

BLAST of MS020594 vs. ExPASy TrEMBL
Match: A0A6J1JGV5 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111484389 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.5e-70
Identity = 134/138 (97.10%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 3   SDEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62
           +DEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG
Sbjct: 3   ADEGAVVIEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62

Query: 63  EDCNQPDYVKLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122
           EDCNQPDYVKLVKALC EHNV+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD
Sbjct: 63  EDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122

Query: 123 FGEDHEALHIVQKHVSSS 141
           FGEDHEALHIVQKHVSSS
Sbjct: 123 FGEDHEALHIVQKHVSSS 140

[Close]

BLAST of MS020594 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-51
Identity = 94/129 (72.87%), Postives = 111/129 (86.05%), Query Frame = 0


Query: 12  APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 71
           A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYV
Sbjct: 16  AEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYV 75

Query: 72  KLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 131
           KLVKALC +H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 132 IVQKHVSSS 141
           IV+KH+ S+
Sbjct: 136 IVKKHLDSN 144

[Close]

BLAST of MS020594 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-51
Identity = 94/129 (72.87%), Postives = 111/129 (86.05%), Query Frame = 0


Query: 12  APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 71
           A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYV
Sbjct: 16  AEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYV 75

Query: 72  KLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 131
           KLVKALC +H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 132 IVQKHVSSS 141
           IV+KH+ S+
Sbjct: 136 IVKKHLDSN 144

[Close]

BLAST of MS020594 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-51
Identity = 94/129 (72.87%), Postives = 111/129 (86.05%), Query Frame = 0


Query: 12  APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 71
           A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYV
Sbjct: 16  AEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYV 75

Query: 72  KLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 131
           KLVKALC +H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 132 IVQKHVSSS 141
           IV+KH+ S+
Sbjct: 136 IVKKHLDSN 144

[Close]

BLAST of MS020594 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-49
Identity = 98/140 (70.00%), Postives = 110/140 (78.57%), Query Frame = 0


Query: 4   DEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 63
           DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL 
Sbjct: 4   DEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLV 63

Query: 64  VLGEDCNQPDYVKLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV 123
           VL EDCNQPDYVKLVKALC +H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V
Sbjct: 64  VLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLV 123

Query: 124 VKDFGEDHEALHIVQKHVSS 140
           VKDFGE+  AL IV KH++S
Sbjct: 124 VKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of MS020594 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-49
Identity = 98/140 (70.00%), Postives = 110/140 (78.57%), Query Frame = 0


Query: 4   DEGAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 63
           DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL 
Sbjct: 4   DEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLV 63

Query: 64  VLGEDCNQPDYVKLVKALCGEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV 123
           VL EDCNQPDYVKLVKALC +H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V
Sbjct: 64  VLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLV 123

Query: 124 VKDFGEDHEALHIVQKHVSS 140
           VKDFGE+  AL IV KH++S
Sbjct: 124 VKDFGEETTALSIVNKHIAS 143

The following BLAST results are available for this feature:

BLAST of MS020594 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146157.1	2.1e-70	99.27	40S ribosomal protein S12-like [Momordica charantia]	[more]
XP_004147008.1	1.0e-69	97.10	40S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribos...	[more]
XP_023512603.1	1.3e-69	97.10	40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo]	[more]
KAG6571063.1	1.3e-69	97.10	40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022986724.1	1.8e-69	97.10	40S ribosomal protein S12-like [Cucurbita maxima]	[more]

BLAST of MS020594 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHS0	2.6e-55	79.07	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
Q9SKZ3	2.5e-50	72.87	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
Q9S9P1	1.8e-48	70.00	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
Q76I81	4.5e-36	57.02	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]
P25398	4.5e-36	57.02	40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3	[more]

BLAST of MS020594 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CYT4	1.0e-70	99.27	40S ribosomal protein S12 OS=Momordica charantia OX=3673 GN=LOC111015439 PE=3 SV...	[more]
A0A5D3BJY5	5.0e-70	97.10	40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0LM61	5.0e-70	97.10	40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1	[more]
A0A1S3C6L3	5.0e-70	97.10	40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103497279 PE=3 SV=1	[more]
A0A6J1JGV5	8.5e-70	97.10	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111484389 PE=3 SV=1	[more]

BLAST of MS020594 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32060.1	1.8e-51	72.87	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.3	1.8e-51	72.87	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.2	1.8e-51	72.87	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.2	1.3e-49	70.00	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.1	1.3e-49	70.00	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 85..106 score: 57.85 coord: 110..123 score: 81.17 coord: 30..43 score: 54.55 coord: 44..60 score: 48.13
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 7..139
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 26..44
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 26..119 e-value: 7.0E-27 score: 93.0
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 8..140 e-value: 8.0E-54 score: 182.5
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 19..138
None	No IPR available	PANTHER	PTHR11843:SF20	40S RIBOSOMAL PROTEIN S12	coord: 7..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS020594.1	MS020594.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome